Running with gitlab-runner 13.12.0 (7a6612da)  on dsop-shared-gitlab-runner-5fcd8977b8-m6qmr JrExJ6yx  feature flags: FF_USE_LEGACY_KUBERNETES_EXECUTION_STRATEGY:false section_start:1631047424:resolve_secrets Resolving secrets section_end:1631047424:resolve_secrets section_start:1631047424:prepare_executor Preparing the "kubernetes" executor Using Kubernetes namespace: gitlab-runner-ironbank-dsop Using Kubernetes executor with image registry1.dso.mil/ironbank/ironbank-pipelines/rootless-podman:0.2 ... Using attach strategy to execute scripts... section_end:1631047424:prepare_executor section_start:1631047424:prepare_script Preparing environment Waiting for pod gitlab-runner-ironbank-dsop/runner-jrexj6yx-project-6601-concurrent-0sbv8k to be running, status is Pending Waiting for pod gitlab-runner-ironbank-dsop/runner-jrexj6yx-project-6601-concurrent-0sbv8k to be running, status is Pending ContainersNotReady: "containers with unready status: [build helper istio-proxy]" ContainersNotReady: "containers with unready status: [build helper istio-proxy]" Running on runner-jrexj6yx-project-6601-concurrent-0sbv8k via dsop-shared-gitlab-runner-5fcd8977b8-m6qmr... section_end:1631047430:prepare_script section_start:1631047430:get_sources Getting source from Git repository $ until [ $(curl --fail --silent --output /dev/stderr --write-out "%{http_code}" localhost:15020/healthz/ready) -eq 200 ]; do echo Waiting for Sidecar; sleep 3 ; done ; echo Sidecar available; Sidecar available Fetching changes with git depth set to 50... Initialized empty Git repository in /builds/JrExJ6yx/0/dsop/aiml/python/python-r-ai/.git/ Created fresh repository. Checking out 3abf0660 as development... Skipping Git submodules setup section_end:1631047431:get_sources section_start:1631047431:download_artifacts Downloading artifacts Downloading artifacts for hardening-manifest (6301855)... Downloading artifacts from coordinator... ok  id=6301855 responseStatus=200 OK token=9jB78nQx WARNING: ci-artifacts/preflight/: lchown ci-artifacts/preflight/: operation not permitted (suppressing repeats) Downloading artifacts for import-artifacts (6301857)... Downloading artifacts from coordinator... ok  id=6301857 responseStatus=200 OK token=1BeqRLis WARNING: ci-artifacts/import-artifacts/: lchown ci-artifacts/import-artifacts/: operation not permitted (suppressing repeats) Downloading artifacts for load-scripts (6301852)... Downloading artifacts from coordinator... ok  id=6301852 responseStatus=200 OK token=D_mo-t3j WARNING: ci-artifacts/[MASKED]/: lchown ci-artifacts/[MASKED]/: operation not permitted (suppressing repeats) Downloading artifacts for wl-compare-lint (6301856)... Downloading artifacts from coordinator... ok  id=6301856 responseStatus=200 OK token=FTxn1Qv9 WARNING: ci-artifacts/lint/: lchown ci-artifacts/lint/: operation not permitted (suppressing repeats) section_end:1631047441:download_artifacts section_start:1631047441:step_script Executing "step_script" stage of the job script $ "${PIPELINE_REPO_DIR}/stages/build/build-run.sh" Determine source registry based on branch Load any images used in Dockerfile build Load HTTP and S3 external resources 'ci-artifacts/import-artifacts/external-resources/AER_1.2-9.tar.gz' -> './AER_1.2-9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/AUC_0.3.0.tar.gz' -> './AUC_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/BBmisc_1.11.tar.gz' -> './BBmisc_1.11.tar.gz' 'ci-artifacts/import-artifacts/external-resources/BH_1.75.0-0.tar.gz' -> './BH_1.75.0-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/BiasedUrn_1.07.tar.gz' -> './BiasedUrn_1.07.tar.gz' 'ci-artifacts/import-artifacts/external-resources/BiocManager_1.30.14.tar.gz' -> './BiocManager_1.30.14.tar.gz' 'ci-artifacts/import-artifacts/external-resources/C50_0.1.3.1.tar.gz' -> './C50_0.1.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Cairo_1.5-12.2.tar.gz' -> './Cairo_1.5-12.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Ckmeans.1d.dp_4.3.3.tar.gz' -> './Ckmeans.1d.dp_4.3.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Cubist_0.2.40.tar.gz' -> './Cubist_0.2.40.tar.gz' 'ci-artifacts/import-artifacts/external-resources/DBI_1.1.1.tar.gz' -> './DBI_1.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/DEoptimR_1.0-8.tar.gz' -> './DEoptimR_1.0-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/DT_0.18.tar.gz' -> './DT_0.18.tar.gz' 'ci-artifacts/import-artifacts/external-resources/DiagrammeR_1.0.6.1.tar.gz' -> './DiagrammeR_1.0.6.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/DiceDesign_1.9.tar.gz' -> './DiceDesign_1.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ECharts2Shiny_0.2.13.tar.gz' -> './ECharts2Shiny_0.2.13.tar.gz' 'ci-artifacts/import-artifacts/external-resources/FNN_1.1.3.tar.gz' -> './FNN_1.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Formula_1.2-4.tar.gz' -> './Formula_1.2-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/GGally_2.1.1.tar.gz' -> './GGally_2.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/GPfit_1.0-8.tar.gz' -> './GPfit_1.0-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Hmisc_4.5-0.tar.gz' -> './Hmisc_4.5-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/IRdisplay_1.0.tar.gz' -> './IRdisplay_1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ISOcodes_2021.02.24.tar.gz' -> './ISOcodes_2021.02.24.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64.rpm' -> './ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/JuliaCall_0.17.2.tar.gz' -> './JuliaCall_0.17.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Kendall_2.2.tar.gz' -> './Kendall_2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Lahman_9.0-0.tar.gz' -> './Lahman_9.0-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/LearnBayes_2.15.1.tar.gz' -> './LearnBayes_2.15.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/MatrixModels_0.5-0.tar.gz' -> './MatrixModels_0.5-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Matrix_1.3-3.tar.gz' -> './Matrix_1.3-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ModelMetrics_1.2.2.2.tar.gz' -> './ModelMetrics_1.2.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/NLP_0.2-1.tar.gz' -> './NLP_0.2-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ParamHelpers_1.14.tar.gz' -> './ParamHelpers_1.14.tar.gz' 'ci-artifacts/import-artifacts/external-resources/PerformanceAnalytics_2.0.4.tar.gz' -> './PerformanceAnalytics_2.0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Quandl_2.10.0.tar.gz' -> './Quandl_2.10.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R.cache_0.15.0.tar.gz' -> './R.cache_0.15.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R.methodsS3_1.8.1.tar.gz' -> './R.methodsS3_1.8.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R.oo_1.24.0.tar.gz' -> './R.oo_1.24.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R.utils_2.10.1.tar.gz' -> './R.utils_2.10.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R6_2.5.0.tar.gz' -> './R6_2.5.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RANN_2.6.1.tar.gz' -> './RANN_2.6.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RColorBrewer_1.1-2.tar.gz' -> './RColorBrewer_1.1-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RCurl_1.98-1.3.tar.gz' -> './RCurl_1.98-1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RJDBC_0.2-8.tar.gz' -> './RJDBC_0.2-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RJSONIO_1.3-1.4.tar.gz' -> './RJSONIO_1.3-1.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ROCR_1.0-11.tar.gz' -> './ROCR_1.0-11.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ROSE_0.0-3.tar.gz' -> './ROSE_0.0-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RSQLite_2.2.7.tar.gz' -> './RSQLite_2.2.7.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RSiena_1.3.0.tar.gz' -> './RSiena_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/R_AIML_Deps.tar.gz' -> './R_AIML_Deps.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Rchoice_0.3-2.tar.gz' -> './Rchoice_0.3-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RcppArmadillo_0.10.4.0.0.tar.gz' -> './RcppArmadillo_0.10.4.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RcppEigen_0.3.3.9.1.tar.gz' -> './RcppEigen_0.3.3.9.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/RcppParallel_5.1.4.tar.gz' -> './RcppParallel_5.1.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Rcpp_1.0.6.tar.gz' -> './Rcpp_1.0.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/Rdpack_2.1.1.tar.gz' -> './Rdpack_2.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/SQUAREM_2021.1.tar.gz' -> './SQUAREM_2021.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/SnowballC_0.7.0.tar.gz' -> './SnowballC_0.7.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/SparseM_1.81.tar.gz' -> './SparseM_1.81.tar.gz' 'ci-artifacts/import-artifacts/external-resources/StanHeaders_2.21.0-7.tar.gz' -> './StanHeaders_2.21.0-7.tar.gz' 'ci-artifacts/import-artifacts/external-resources/TH.data_1.0-10.tar.gz' -> './TH.data_1.0-10.tar.gz' 'ci-artifacts/import-artifacts/external-resources/TTR_0.24.2.tar.gz' -> './TTR_0.24.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/TeachingDemos_2.12.tar.gz' -> './TeachingDemos_2.12.tar.gz' 'ci-artifacts/import-artifacts/external-resources/V8_3.4.2.tar.gz' -> './V8_3.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/XML_3.99-0.6.tar.gz' -> './XML_3.99-0.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/abind_1.4-5.tar.gz' -> './abind_1.4-5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/akima_0.6-2.1.tar.gz' -> './akima_0.6-2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/alphavantager_0.1.2.tar.gz' -> './alphavantager_0.1.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/anytime_0.3.9.tar.gz' -> './anytime_0.3.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/argonDash_0.2.0.tar.gz' -> './argonDash_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/argonR_0.2.0.tar.gz' -> './argonR_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/arrow_4.0.0.1.tar.gz' -> './arrow_4.0.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/askpass_1.1.tar.gz' -> './askpass_1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/assertthat_0.2.1.tar.gz' -> './assertthat_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/backports_1.2.1.tar.gz' -> './backports_1.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/base64enc_0.1-3.tar.gz' -> './base64enc_0.1-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bbmle_1.0.23.1.tar.gz' -> './bbmle_1.0.23.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bdsmatrix_1.3-4.tar.gz' -> './bdsmatrix_1.3-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/betareg_3.1-4.tar.gz' -> './betareg_3.1-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/biglm_0.9-2.1.tar.gz' -> './biglm_0.9-2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/binGroup_2.2-1.tar.gz' -> './binGroup_2.2-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bit64_4.0.5.tar.gz' -> './bit64_4.0.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bit_4.0.4.tar.gz' -> './bit_4.0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bitops_1.0-7.tar.gz' -> './bitops_1.0-7.tar.gz' 'ci-artifacts/import-artifacts/external-resources/blob_1.2.1.tar.gz' -> './blob_1.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bookdown_0.22.tar.gz' -> './bookdown_0.22.tar.gz' 'ci-artifacts/import-artifacts/external-resources/brew_1.0-6.tar.gz' -> './brew_1.0-6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/brio_1.1.2.tar.gz' -> './brio_1.1.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/broom_0.7.6.tar.gz' -> './broom_0.7.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bs4Dash_0.5.0.tar.gz' -> './bs4Dash_0.5.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/bslib_0.2.4.tar.gz' -> './bslib_0.2.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/btergm_1.9.13.tar.gz' -> './btergm_1.9.13.tar.gz' 'ci-artifacts/import-artifacts/external-resources/caTools_1.18.2.tar.gz' -> './caTools_1.18.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cachem_1.0.4.tar.gz' -> './cachem_1.0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/callr_3.7.0.tar.gz' -> './callr_3.7.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/carData_3.0-4.tar.gz' -> './carData_3.0-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/car_3.0-10.tar.gz' -> './car_3.0-10.tar.gz' 'ci-artifacts/import-artifacts/external-resources/caret_6.0-86.tar.gz' -> './caret_6.0-86.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cellranger_1.1.0.tar.gz' -> './cellranger_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/checkmate_2.0.0.tar.gz' -> './checkmate_2.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/classInt_0.4-3.tar.gz' -> './classInt_0.4-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cli_2.5.0.tar.gz' -> './cli_2.5.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/clipr_0.7.1.tar.gz' -> './clipr_0.7.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/clisymbols_1.2.0.tar.gz' -> './clisymbols_1.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cmprsk_2.2-10.tar.gz' -> './cmprsk_2.2-10.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cobs_1.3-4.tar.gz' -> './cobs_1.3-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/coda_0.19-4.tar.gz' -> './coda_0.19-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/colorspace_2.0-1.tar.gz' -> './colorspace_2.0-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/commonmark_1.7.tar.gz' -> './commonmark_1.7.tar.gz' 'ci-artifacts/import-artifacts/external-resources/config_0.3.1.tar.gz' -> './config_0.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/conflicted_1.0.4.tar.gz' -> './conflicted_1.0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/conquer_1.0.2.tar.gz' -> './conquer_1.0.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/covr_3.5.1.tar.gz' -> './covr_3.5.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cpp11_0.2.7.tar.gz' -> './cpp11_0.2.7.tar.gz' 'ci-artifacts/import-artifacts/external-resources/crayon_1.4.1.tar.gz' -> './crayon_1.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/credentials_1.3.0.tar.gz' -> './credentials_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/crosstalk_1.1.1.tar.gz' -> './crosstalk_1.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/crul_1.1.0.tar.gz' -> './crul_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/curl_4.3.1.tar.gz' -> './curl_4.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/cyclocomp_1.1.0.tar.gz' -> './cyclocomp_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/data.table_1.14.0.tar.gz' -> './data.table_1.14.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dbplyr_2.1.1.tar.gz' -> './dbplyr_2.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/debugme_1.1.0.tar.gz' -> './debugme_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/deldir_0.2-10.tar.gz' -> './deldir_0.2-10.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dendextend_1.15.1.tar.gz' -> './dendextend_1.15.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/desc_1.3.0.tar.gz' -> './desc_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/devtools_2.4.1.tar.gz' -> './devtools_2.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dfidx_0.0-4.tar.gz' -> './dfidx_0.0-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dials_0.0.9.tar.gz' -> './dials_0.0.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dichromat_2.0-0.tar.gz' -> './dichromat_2.0-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/diffobj_0.3.4.tar.gz' -> './diffobj_0.3.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/diffviewer_0.1.0.tar.gz' -> './diffviewer_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/digest_0.6.27.tar.gz' -> './digest_0.6.27.tar.gz' 'ci-artifacts/import-artifacts/external-resources/doParallel_1.0.16.tar.gz' -> './doParallel_1.0.16.tar.gz' 'ci-artifacts/import-artifacts/external-resources/downlit_0.2.1.tar.gz' -> './downlit_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/downloader_0.4.tar.gz' -> './downloader_0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dplyr_1.0.6.tar.gz' -> './dplyr_1.0.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/drc_3.0-1.tar.gz' -> './drc_3.0-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dreamerr_1.2.3.tar.gz' -> './dreamerr_1.2.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dtplyr_1.1.0.tar.gz' -> './dtplyr_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/dygraphs_1.1.1.6.tar.gz' -> './dygraphs_1.1.1.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/e1071_1.7-6.tar.gz' -> './e1071_1.7-6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/earth_5.3.0.tar.gz' -> './earth_5.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ellipsis_0.3.2.tar.gz' -> './ellipsis_0.3.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/emmeans_1.6.0.tar.gz' -> './emmeans_1.6.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/epiR_2.0.19.tar.gz' -> './epiR_2.0.19.tar.gz' 'ci-artifacts/import-artifacts/external-resources/equatags_0.1.0.tar.gz' -> './equatags_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ergm_3.11.0.tar.gz' -> './ergm_3.11.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/estimability_1.3.tar.gz' -> './estimability_1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/evaluate_0.14.tar.gz' -> './evaluate_0.14.tar.gz' 'ci-artifacts/import-artifacts/external-resources/expm_0.999-6.tar.gz' -> './expm_0.999-6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/extraDistr_1.9.1.tar.gz' -> './extraDistr_1.9.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fansi_0.4.2.tar.gz' -> './fansi_0.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/farver_2.1.0.tar.gz' -> './farver_2.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fastmap_1.1.0.tar.gz' -> './fastmap_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fastmatch_1.1-0.tar.gz' -> './fastmatch_1.1-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/feather_0.3.5.tar.gz' -> './feather_0.3.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/filehash_2.4-2.tar.gz' -> './filehash_2.4-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fit.models_0.64.tar.gz' -> './fit.models_0.64.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fixest_0.8.4.tar.gz' -> './fixest_0.8.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/flexdashboard_0.5.2.tar.gz' -> './flexdashboard_0.5.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/flexmix_2.3-17.tar.gz' -> './flexmix_2.3-17.tar.gz' 'ci-artifacts/import-artifacts/external-resources/flextable_0.6.5.tar.gz' -> './flextable_0.6.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/float_0.2-4.tar.gz' -> './float_0.2-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/foghorn_1.4.0.tar.gz' -> './foghorn_1.4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fontBitstreamVera_0.1.1.tar.gz' -> './fontBitstreamVera_0.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fontLiberation_0.1.0.tar.gz' -> './fontLiberation_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fontquiver_0.2.1.tar.gz' -> './fontquiver_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/forcats_0.5.1.tar.gz' -> './forcats_0.5.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/foreach_1.5.1.tar.gz' -> './foreach_1.5.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/forecast_8.14.tar.gz' -> './forecast_8.14.tar.gz' 'ci-artifacts/import-artifacts/external-resources/foreign_0.8-81.tar.gz' -> './foreign_0.8-81.tar.gz' 'ci-artifacts/import-artifacts/external-resources/forge_0.2.0.tar.gz' -> './forge_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/formatR_1.9.tar.gz' -> './formatR_1.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/formattable_0.2.1.tar.gz' -> './formattable_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fracdiff_1.5-1.tar.gz' -> './fracdiff_1.5-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/freetype-2.9-patched.tar.gz' -> './freetype-2.9-patched.tar.gz' 'ci-artifacts/import-artifacts/external-resources/freetypeharfbuzz_0.2.6.tar.gz' -> './freetypeharfbuzz_0.2.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fresh_0.2.0.tar.gz' -> './fresh_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/fs_1.5.0.tar.gz' -> './fs_1.5.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/furrr_0.2.2.tar.gz' -> './furrr_0.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/future_1.21.0.tar.gz' -> './future_1.21.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gam_1.20.tar.gz' -> './gam_1.20.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gapminder_0.3.0.tar.gz' -> './gapminder_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gargle_1.1.0.tar.gz' -> './gargle_1.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gdal-3.0.4-8.el8.x86_64.rpm' -> './gdal-3.0.4-8.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/gdal-libs-3.0.4-8.el8.x86_64.rpm' -> './gdal-libs-3.0.4-8.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/gdata_2.18.0.tar.gz' -> './gdata_2.18.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gdtools_0.2.3.tar.gz' -> './gdtools_0.2.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gee_4.13-20.tar.gz' -> './gee_4.13-20.tar.gz' 'ci-artifacts/import-artifacts/external-resources/geepack_1.3-2.tar.gz' -> './geepack_1.3-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/generics_0.1.0.tar.gz' -> './generics_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/geojson_0.3.4.tar.gz' -> './geojson_0.3.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/geojsonio_0.9.4.tar.gz' -> './geojsonio_0.9.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/geojsonsf_2.0.1.tar.gz' -> './geojsonsf_2.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/geometries_0.2.0.tar.gz' -> './geometries_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gert_1.3.0.tar.gz' -> './gert_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/get-libgit2-linux.sh' -> './get-libgit2-linux.sh' 'ci-artifacts/import-artifacts/external-resources/ggiraph_0.7.8.tar.gz' -> './ggiraph_0.7.8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ggplot2_3.3.3.tar.gz' -> './ggplot2_3.3.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ggthemes_4.2.4.tar.gz' -> './ggthemes_4.2.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gh_1.3.0.tar.gz' -> './gh_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gifski_1.4.3-1.tar.gz' -> './gifski_1.4.3-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gitcreds_0.1.1.tar.gz' -> './gitcreds_0.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/glmnetUtils_1.1.8.tar.gz' -> './glmnetUtils_1.1.8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/glmnet_4.1-1.tar.gz' -> './glmnet_4.1-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/globals_0.14.0.tar.gz' -> './globals_0.14.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/glue_1.4.2.tar.gz' -> './glue_1.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gmailr_1.0.0.tar.gz' -> './gmailr_1.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gmm_1.6-6.tar.gz' -> './gmm_1.6-6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gmodels_2.18.1.tar.gz' -> './gmodels_2.18.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gmp_0.6-2.tar.gz' -> './gmp_0.6-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/googledrive_1.0.1.tar.gz' -> './googledrive_1.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/googlesheets4_0.3.0.tar.gz' -> './googlesheets4_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gower_0.2.2.tar.gz' -> './gower_0.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gplots_3.1.1.tar.gz' -> './gplots_3.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gridExtra_2.3.tar.gz' -> './gridExtra_2.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gridSVG_1.7-2.tar.gz' -> './gridSVG_1.7-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gt_0.2.2.tar.gz' -> './gt_0.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gtable_0.3.0.tar.gz' -> './gtable_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/gtools_3.8.2.tar.gz' -> './gtools_3.8.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/hardhat_0.1.5.tar.gz' -> './hardhat_0.1.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/haven_2.4.1.tar.gz' -> './haven_2.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/hexbin_1.28.2.tar.gz' -> './hexbin_1.28.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/highcharter_0.8.2.tar.gz' -> './highcharter_0.8.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/highr_0.9.tar.gz' -> './highr_0.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/hms_1.0.0.tar.gz' -> './hms_1.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/htmlTable_2.1.0.tar.gz' -> './htmlTable_2.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/htmltools_0.5.1.1.tar.gz' -> './htmltools_0.5.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/htmlwidgets_1.5.3.tar.gz' -> './htmlwidgets_1.5.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/httpcode_0.3.0.tar.gz' -> './httpcode_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/httpuv_1.6.1.tar.gz' -> './httpuv_1.6.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/httr_1.4.2.tar.gz' -> './httr_1.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/hunspell_3.0.1.tar.gz' -> './hunspell_3.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ids_1.0.1.tar.gz' -> './ids_1.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/igraph_1.2.6.tar.gz' -> './igraph_1.2.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/infer_0.5.4.tar.gz' -> './infer_0.5.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/influenceR_0.1.0.tar.gz' -> './influenceR_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ini_0.3.1.tar.gz' -> './ini_0.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/inline_0.3.17.tar.gz' -> './inline_0.3.17.tar.gz' 'ci-artifacts/import-artifacts/external-resources/inum_1.0-4.tar.gz' -> './inum_1.0-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ipred_0.9-11.tar.gz' -> './ipred_0.9-11.tar.gz' 'ci-artifacts/import-artifacts/external-resources/irlba_2.3.3.tar.gz' -> './irlba_2.3.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/isoband_0.2.4.tar.gz' -> './isoband_0.2.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/iterators_1.0.13.tar.gz' -> './iterators_1.0.13.tar.gz' 'ci-artifacts/import-artifacts/external-resources/janeaustenr_0.1.5.tar.gz' -> './janeaustenr_0.1.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/janitor_2.1.0.tar.gz' -> './janitor_2.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/joineRML_0.4.5.tar.gz' -> './joineRML_0.4.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/jpeg_0.1-8.1.tar.gz' -> './jpeg_0.1-8.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/jq-1.5-12.el8.x86_64.rpm' -> './jq-1.5-12.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/jqr_1.2.1.tar.gz' -> './jqr_1.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/jquerylib_0.1.4.tar.gz' -> './jquerylib_0.1.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/jsonify_1.2.1.tar.gz' -> './jsonify_1.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/jsonlite_1.7.2.tar.gz' -> './jsonlite_1.7.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/kableExtra_1.3.4.tar.gz' -> './kableExtra_1.3.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/keras_2.4.0.tar.gz' -> './keras_2.4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/kernlab_0.9-29.tar.gz' -> './kernlab_0.9-29.tar.gz' 'ci-artifacts/import-artifacts/external-resources/kknn_1.3.1.tar.gz' -> './kknn_1.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/knitr_1.33.tar.gz' -> './knitr_1.33.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ks_1.12.0.tar.gz' -> './ks_1.12.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/labeling_0.4.2.tar.gz' -> './labeling_0.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/later_1.2.0.tar.gz' -> './later_1.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/latticeExtra_0.6-29.tar.gz' -> './latticeExtra_0.6-29.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lattice_0.20-44.tar.gz' -> './lattice_0.20-44.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lava_1.6.9.tar.gz' -> './lava_1.6.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lavaan_0.6-8.tar.gz' -> './lavaan_0.6-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lazyeval_0.2.2.tar.gz' -> './lazyeval_0.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lda_1.4.2.tar.gz' -> './lda_1.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/leafem_0.1.3.tar.gz' -> './leafem_0.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/leaflet.providers_1.9.0.tar.gz' -> './leaflet.providers_1.9.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/leaflet_2.0.4.1.tar.gz' -> './leaflet_2.0.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/leafpop_0.0.6.tar.gz' -> './leafpop_0.0.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/leaps_3.1.tar.gz' -> './leaps_3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lfe_2.8-6.tar.gz' -> './lfe_2.8-6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lhs_1.1.1.tar.gz' -> './lhs_1.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/libcoin_1.0-8.tar.gz' -> './libcoin_1.0-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/libgit2-1.1.0.x86_64_linux.tar.gz' -> './libgit2-1.1.0.x86_64_linux.tar.gz' 'ci-artifacts/import-artifacts/external-resources/libpng-devel-1.6.34-5.el8.i686.rpm' -> './libpng-devel-1.6.34-5.el8.i686.rpm' 'ci-artifacts/import-artifacts/external-resources/libsodium-1.0.18-2.el8.x86_64.rpm' -> './libsodium-1.0.18-2.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/libsodium-devel-1.0.18-2.el8.x86_64.rpm' -> './libsodium-devel-1.0.18-2.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/libxml2-2.9.7-5.el8.x86_64.rpm' -> './libxml2-2.9.7-5.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/lifecycle_1.0.0.tar.gz' -> './lifecycle_1.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lintr_2.0.1.tar.gz' -> './lintr_2.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/listenv_0.8.0.tar.gz' -> './listenv_0.8.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/listviewer_3.0.0.tar.gz' -> './listviewer_3.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lm.beta_1.5-1.tar.gz' -> './lm.beta_1.5-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lme4_1.1-26.tar.gz' -> './lme4_1.1-26.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lmodel2_1.7-3.tar.gz' -> './lmodel2_1.7-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lmtest_0.9-38.tar.gz' -> './lmtest_0.9-38.tar.gz' 'ci-artifacts/import-artifacts/external-resources/locatexec_0.1.0.tar.gz' -> './locatexec_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/loo_2.4.1.tar.gz' -> './loo_2.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lpSolve_5.6.15.tar.gz' -> './lpSolve_5.6.15.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lsmeans_2.30-0.tar.gz' -> './lsmeans_2.30-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/lubridate_1.7.10.tar.gz' -> './lubridate_1.7.10.tar.gz' 'ci-artifacts/import-artifacts/external-resources/magick_2.7.2.tar.gz' -> './magick_2.7.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/magrittr_2.0.1.tar.gz' -> './magrittr_2.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/mallet_1.0.tar.gz' -> './mallet_1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/manipulateWidget_0.10.1.tar.gz' -> './manipulateWidget_0.10.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/maps_3.3.0.tar.gz' -> './maps_3.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/maptools_1.1-1.tar.gz' -> './maptools_1.1-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/mapview_2.9.0.tar.gz' -> './mapview_2.9.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/margins_0.3.26.tar.gz' -> './margins_0.3.26.tar.gz' 'ci-artifacts/import-artifacts/external-resources/markdown_1.1.tar.gz' -> './markdown_1.1.tar.gz' 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'ci-artifacts/import-artifacts/external-resources/statnet.common_4.4.1.tar.gz' -> './statnet.common_4.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/stm_1.3.6.tar.gz' -> './stm_1.3.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/stopwords_2.2.tar.gz' -> './stopwords_2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/stringi_1.6.1.tar.gz' -> './stringi_1.6.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/stringr_1.4.0.tar.gz' -> './stringr_1.4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/strucchange_1.5-2.tar.gz' -> './strucchange_1.5-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/styler_1.4.1.tar.gz' -> './styler_1.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/survey_4.0.tar.gz' -> './survey_4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/survivalROC_1.0.3.tar.gz' -> './survivalROC_1.0.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/svglite_2.0.0.tar.gz' -> './svglite_2.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/swagger_3.33.1.tar.gz' -> './swagger_3.33.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/sys_3.4.tar.gz' -> './sys_3.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/sysfonts_0.8.3.tar.gz' -> './sysfonts_0.8.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/systemfit_1.1-24.tar.gz' -> './systemfit_1.1-24.tar.gz' 'ci-artifacts/import-artifacts/external-resources/systemfonts_1.0.2.tar.gz' -> './systemfonts_1.0.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tablerDash_0.1.0.tar.gz' -> './tablerDash_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tensorflow_2.4.0.tar.gz' -> './tensorflow_2.4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/testit_0.13.tar.gz' -> './testit_0.13.tar.gz' 'ci-artifacts/import-artifacts/external-resources/testthat_3.0.2.tar.gz' -> './testthat_3.0.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/textdata_0.4.1.tar.gz' -> './textdata_0.4.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/textshaping_0.3.3.tar.gz' -> './textshaping_0.3.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tfruns_1.5.0.tar.gz' -> './tfruns_1.5.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/themis_0.1.3.tar.gz' -> './themis_0.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tibble_3.1.1.tar.gz' -> './tibble_3.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidymodels_0.1.3.tar.gz' -> './tidymodels_0.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidyquant_1.0.3.tar.gz' -> './tidyquant_1.0.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidyr_1.1.3.tar.gz' -> './tidyr_1.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidyselect_1.1.1.tar.gz' -> './tidyselect_1.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidytext_0.3.1.tar.gz' -> './tidytext_0.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tidyverse_1.3.1.tar.gz' -> './tidyverse_1.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tikzDevice_0.12.3.1.tar.gz' -> './tikzDevice_0.12.3.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/timeDate_3043.102.tar.gz' -> './timeDate_3043.102.tar.gz' 'ci-artifacts/import-artifacts/external-resources/timeSeries_3062.100.tar.gz' -> './timeSeries_3062.100.tar.gz' 'ci-artifacts/import-artifacts/external-resources/timetk_2.6.1.tar.gz' -> './timetk_2.6.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tinytex_0.31.tar.gz' -> './tinytex_0.31.tar.gz' 'ci-artifacts/import-artifacts/external-resources/titanic_0.1.0.tar.gz' -> './titanic_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tm_0.7-8.tar.gz' -> './tm_0.7-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tmvnsim_1.0-2.tar.gz' -> './tmvnsim_1.0-2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tokenizers_0.2.1.tar.gz' -> './tokenizers_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/topicmodels_0.2-12.tar.gz' -> './topicmodels_0.2-12.tar.gz' 'ci-artifacts/import-artifacts/external-resources/triebeard_0.3.0.tar.gz' -> './triebeard_0.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/trust_0.1-8.tar.gz' -> './trust_0.1-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tseries_0.10-48.tar.gz' -> './tseries_0.10-48.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tufte_0.9.tar.gz' -> './tufte_0.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/tune_0.1.5.tar.gz' -> './tune_0.1.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/ucminf_1.1-4.tar.gz' -> './ucminf_1.1-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/udunits2-devel-2.2.26-5.el8.x86_64.rpm' -> './udunits2-devel-2.2.26-5.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/unbalanced_2.0.tar.gz' -> './unbalanced_2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/units_0.7-1.tar.gz' -> './units_0.7-1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/urca_1.3-0.tar.gz' -> './urca_1.3-0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/urltools_1.7.3.tar.gz' -> './urltools_1.7.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/usethis_2.0.1.tar.gz' -> './usethis_2.0.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/utf8_1.2.1.tar.gz' -> './utf8_1.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/uuid_0.1-4.tar.gz' -> './uuid_0.1-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/v8-devel-6.7.17-8.el8.x86_64.rpm' -> './v8-devel-6.7.17-8.el8.x86_64.rpm' 'ci-artifacts/import-artifacts/external-resources/vars_1.5-3.tar.gz' -> './vars_1.5-3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/vcd_1.4-8.tar.gz' -> './vcd_1.4-8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/vctrs_0.3.8.tar.gz' -> './vctrs_0.3.8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/vdiffr_0.3.3.tar.gz' -> './vdiffr_0.3.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/viridisLite_0.4.0.tar.gz' -> './viridisLite_0.4.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/viridis_0.6.0.tar.gz' -> './viridis_0.6.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/visNetwork_2.0.9.tar.gz' -> './visNetwork_2.0.9.tar.gz' 'ci-artifacts/import-artifacts/external-resources/waiter_0.2.1.tar.gz' -> './waiter_0.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/waldo_0.2.5.tar.gz' -> './waldo_0.2.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/warp_0.2.0.tar.gz' -> './warp_0.2.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/webdriver_1.0.6.tar.gz' -> './webdriver_1.0.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/webfakes_1.1.3.tar.gz' -> './webfakes_1.1.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/webshot_0.5.2.tar.gz' -> './webshot_0.5.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/webutils_1.1.tar.gz' -> './webutils_1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/whisker_0.4.tar.gz' -> './whisker_0.4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/whoami_1.3.0.tar.gz' -> './whoami_1.3.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/withr_2.4.2.tar.gz' -> './withr_2.4.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/wordcloud_2.6.tar.gz' -> './wordcloud_2.6.tar.gz' 'ci-artifacts/import-artifacts/external-resources/workflows_0.2.2.tar.gz' -> './workflows_0.2.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/workflowsets_0.0.2.tar.gz' -> './workflowsets_0.0.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xergm.common_1.7.8.tar.gz' -> './xergm.common_1.7.8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xfun_0.22.tar.gz' -> './xfun_0.22.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xgboost_1.4.1.1.tar.gz' -> './xgboost_1.4.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xml2_1.3.2.tar.gz' -> './xml2_1.3.2.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xmlparsedata_1.0.5.tar.gz' -> './xmlparsedata_1.0.5.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xopen_1.0.0.tar.gz' -> './xopen_1.0.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xslt_1.4.3.tar.gz' -> './xslt_1.4.3.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xtable_1.8-4.tar.gz' -> './xtable_1.8-4.tar.gz' 'ci-artifacts/import-artifacts/external-resources/xts_0.12.1.tar.gz' -> './xts_0.12.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/yaml_2.2.1.tar.gz' -> './yaml_2.2.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/yardstick_0.0.8.tar.gz' -> './yardstick_0.0.8.tar.gz' 'ci-artifacts/import-artifacts/external-resources/zeallot_0.1.0.tar.gz' -> './zeallot_0.1.0.tar.gz' 'ci-artifacts/import-artifacts/external-resources/zip_2.1.1.tar.gz' -> './zip_2.1.1.tar.gz' 'ci-artifacts/import-artifacts/external-resources/zoo_1.8-9.tar.gz' -> './zoo_1.8-9.tar.gz' Converting labels from hardening manifest into command line args Converting build args from hardening manifest into command line args Build the image STEP 1: FROM registry1.dso.mil/ironbank/carnegie-mellon/python-ai/python38-ai AS builder Trying to pull registry1.dso.mil/ironbank/carnegie-mellon/python-ai/python38-ai:latest... Getting image source signatures Copying blob sha256:96476a77b28db43fcb170401c287700d91d95cdff9c06e5ea7b48289d40a8e57 Copying blob sha256:db2f50b75fc09a20e8d9c497d96ad384fbeacf7e77df71e4c7b578d4c07fccce Copying blob sha256:55a436000dbf9921b880d0fd54fd2214eb4613978b782e98f6e0e2d1ac6e4fe7 Copying blob sha256:612731bd4073ce3a4b81a4cba66d261924ba75b5ce327bb37f3e0e3f4aced605 Copying blob sha256:2c86efc2ce4ecbdc273299b833a41850d8af7a56503a9f640e3c9fa6841f46e3 Copying config sha256:7ab2232c1cd2428335fb598b42f0814d1b1f924faa1d6c3d41c1886300e6af76 Writing manifest to image destination Storing signatures Getting image source signatures Copying blob sha256:98469092e6042f8c9cc81dcb1a710957fb5ef27817c9b178f7b71c4f242cb2ed Copying blob sha256:bfb9caafb0fc0d8496a27709f1698ac90d1a306556387a75b92a86063544f4c8 Copying blob sha256:f221949c4d4c872ec15a3aece5a3367c1730ec2c25d8d3a1173c8d8f4f630adb Copying blob sha256:c768fef9bed9bb9aeb773afe08d93460f752923fdfd765fe1da614f7b20f75ba Copying blob sha256:07d27577abafad104c8954b421949b5b711d3a3c10749ad0ece7dfbacc1982eb Copying config sha256:00445b7913e627ededf28489a32d005bfd06a4cd1ab4f21424f795e9da87e207 Writing manifest to image destination Storing signatures --> 00445b7913e STEP 2: FROM registry1.dso.mil/ironbank/opensource/r/r-base:4.0.3 AS final Trying to pull registry1.dso.mil/ironbank/opensource/r/r-base:4.0.3... Getting image source signatures Copying blob sha256:db2f50b75fc09a20e8d9c497d96ad384fbeacf7e77df71e4c7b578d4c07fccce Copying blob sha256:96476a77b28db43fcb170401c287700d91d95cdff9c06e5ea7b48289d40a8e57 Copying blob sha256:361ab352f363f6ec6a580e3cfcf5dca838fb183986a9850dba165161b137d3bb Copying blob sha256:c83ac93b810e9acd81d36fbb73d89d796a73747feb22959d6c4eb4af6b27a0fd Copying config sha256:2461030f82ca07fc3af074c71c672172046dcc7de0b5392ae4553c509a430e7f Writing manifest to image destination Storing signatures STEP 3: COPY --from=builder /opt/python /opt/python STEP 4: COPY --from=builder /usr/local/bin /usr/local/bin STEP 5: COPY --from=builder /usr/local/lib /usr/local/lib STEP 6: USER root STEP 7: ENV PATH="/opt/python/venv/bin:$PATH" STEP 8: RUN yum update -y && yum install -y vim zip unzip curl net-tools git gcc-c++ binutils glibc-devel glibc-headers glib2-devel libcurl-devel libX11-common kernel-headers openssl-devel libxml2-devel Red Hat Universal Base Image 8 (RPMs) - BaseOS 79 kB/s | 790 kB 00:10 Red Hat Universal Base Image 8 (RPMs) - AppStre 247 kB/s | 2.4 MB 00:09 Red Hat Universal Base Image 8 (RPMs) - CodeRea 1.4 kB/s | 14 kB 00:10 Dependencies resolved. Nothing to do. Complete! Last metadata expiration check: 0:00:01 ago on Tue Sep 7 20:47:22 2021. Package zip-3.0-23.el8.x86_64 is already installed. Package unzip-6.0-45.el8_4.x86_64 is already installed. Package gcc-c++-8.4.1-1.el8.x86_64 is already installed. Dependencies resolved. ================================================================================================ Package Arch Version Repository Size ================================================================================================ Installing: binutils x86_64 2.30-93.el8 ubi-8-baseos 5.8 M curl x86_64 7.61.1-18.el8 ubi-8-baseos 353 k git x86_64 2.27.0-1.el8 ubi-8-appstream 164 k glib2-devel x86_64 2.56.4-10.el8_4.1 ubi-8-baseos 424 k glibc-devel x86_64 2.28-151.el8 ubi-8-baseos 1.0 M glibc-headers x86_64 2.28-151.el8 ubi-8-baseos 478 k kernel-headers x86_64 4.18.0-305.12.1.el8_4 ubi-8-baseos 7.1 M libX11-common noarch 1.6.8-4.el8 ubi-8-appstream 158 k libcurl-devel x86_64 7.61.1-18.el8 ubi-8-baseos 833 k libxml2-devel x86_64 2.9.7-9.el8_4.2 ubi-8-appstream 1.0 M net-tools x86_64 2.0-0.52.20160912git.el8 ubi-8-baseos 322 k openssl-devel x86_64 1:1.1.1g-15.el8_3 ubi-8-baseos 2.3 M vim-enhanced x86_64 2:8.0.1763-15.el8 ubi-8-appstream 1.4 M Installing dependencies: cmake-filesystem x86_64 3.18.2-11.el8_4 ubi-8-appstream 44 k emacs-filesystem noarch 1:26.1-5.el8 ubi-8-baseos 69 k git-core x86_64 2.27.0-1.el8 ubi-8-appstream 5.7 M git-core-doc noarch 2.27.0-1.el8 ubi-8-appstream 2.5 M gpm-libs x86_64 1.20.7-17.el8 ubi-8-appstream 39 k groff-base x86_64 1.22.3-18.el8 ubi-8-baseos 1.0 M keyutils-libs-devel x86_64 1.5.10-6.el8 ubi-8-baseos 48 k krb5-devel x86_64 1.18.2-8.el8 ubi-8-baseos 559 k libcom_err-devel x86_64 1.45.6-1.el8 ubi-8-baseos 38 k libedit x86_64 3.1-23.20170329cvs.el8 ubi-8-baseos 102 k libkadm5 x86_64 1.18.2-8.el8 ubi-8-baseos 186 k libselinux-devel x86_64 2.9-5.el8 ubi-8-baseos 200 k libsepol-devel x86_64 2.9-2.el8 ubi-8-baseos 86 k libverto-devel x86_64 0.3.0-5.el8 ubi-8-baseos 18 k ncurses x86_64 6.1-7.20180224.el8 ubi-8-baseos 387 k openssh x86_64 8.0p1-6.el8_4.2 ubi-8-baseos 521 k openssh-clients x86_64 8.0p1-6.el8_4.2 ubi-8-baseos 667 k openssl x86_64 1:1.1.1g-15.el8_3 ubi-8-baseos 707 k pcre-cpp x86_64 8.42-4.el8 ubi-8-baseos 47 k pcre-devel x86_64 8.42-4.el8 ubi-8-baseos 551 k pcre-utf16 x86_64 8.42-4.el8 ubi-8-baseos 195 k pcre-utf32 x86_64 8.42-4.el8 ubi-8-baseos 186 k perl-Carp noarch 1.42-396.el8 ubi-8-baseos 30 k perl-Data-Dumper x86_64 2.167-399.el8 ubi-8-baseos 58 k perl-Digest noarch 1.17-395.el8 ubi-8-appstream 27 k perl-Digest-MD5 x86_64 2.55-396.el8 ubi-8-appstream 37 k perl-Encode x86_64 4:2.97-3.el8 ubi-8-baseos 1.5 M perl-Errno x86_64 1.28-419.el8_4.1 ubi-8-baseos 76 k perl-Error noarch 1:0.17025-2.el8 ubi-8-appstream 46 k perl-Exporter noarch 5.72-396.el8 ubi-8-baseos 34 k perl-File-Path noarch 2.15-2.el8 ubi-8-baseos 38 k perl-File-Temp noarch 0.230.600-1.el8 ubi-8-baseos 63 k perl-Getopt-Long noarch 1:2.50-4.el8 ubi-8-baseos 63 k perl-Git noarch 2.27.0-1.el8 ubi-8-appstream 78 k perl-HTTP-Tiny noarch 0.074-1.el8 ubi-8-baseos 58 k perl-IO x86_64 1.38-419.el8_4.1 ubi-8-baseos 142 k perl-MIME-Base64 x86_64 3.15-396.el8 ubi-8-baseos 31 k perl-Net-SSLeay x86_64 1.88-1.module+el8.3.0+6446+594cad75 ubi-8-appstream 379 k perl-PathTools x86_64 3.74-1.el8 ubi-8-baseos 90 k perl-Pod-Escapes noarch 1:1.07-395.el8 ubi-8-baseos 20 k perl-Pod-Perldoc noarch 3.28-396.el8 ubi-8-baseos 88 k perl-Pod-Simple noarch 1:3.35-395.el8 ubi-8-baseos 213 k perl-Pod-Usage noarch 4:1.69-395.el8 ubi-8-baseos 34 k perl-Scalar-List-Utils x86_64 3:1.49-2.el8 ubi-8-baseos 68 k perl-Socket x86_64 4:2.027-3.el8 ubi-8-baseos 59 k perl-Storable x86_64 1:3.11-3.el8 ubi-8-baseos 98 k perl-Term-ANSIColor noarch 4.06-396.el8 ubi-8-baseos 46 k perl-Term-Cap noarch 1.17-395.el8 ubi-8-baseos 23 k perl-TermReadKey x86_64 2.37-7.el8 ubi-8-appstream 40 k perl-Text-ParseWords noarch 3.30-395.el8 ubi-8-baseos 18 k perl-Text-Tabs+Wrap noarch 2013.0523-395.el8 ubi-8-baseos 24 k perl-Time-Local noarch 1:1.280-1.el8 ubi-8-baseos 34 k perl-URI noarch 1.73-3.el8 ubi-8-appstream 116 k perl-Unicode-Normalize x86_64 1.25-396.el8 ubi-8-baseos 82 k perl-constant noarch 1.33-396.el8 ubi-8-baseos 25 k perl-interpreter x86_64 4:5.26.3-419.el8_4.1 ubi-8-baseos 6.3 M perl-libnet noarch 3.11-3.el8 ubi-8-appstream 121 k perl-libs x86_64 4:5.26.3-419.el8_4.1 ubi-8-baseos 1.6 M perl-macros x86_64 4:5.26.3-419.el8_4.1 ubi-8-baseos 72 k perl-parent noarch 1:0.237-1.el8 ubi-8-baseos 20 k perl-podlators noarch 4.11-1.el8 ubi-8-baseos 118 k perl-threads x86_64 1:2.21-2.el8 ubi-8-baseos 61 k perl-threads-shared x86_64 1.58-2.el8 ubi-8-baseos 48 k vim-common x86_64 2:8.0.1763-15.el8 ubi-8-appstream 6.3 M vim-filesystem noarch 2:8.0.1763-15.el8 ubi-8-appstream 48 k Installing weak dependencies: perl-IO-Socket-IP noarch 0.39-5.el8 ubi-8-appstream 47 k perl-IO-Socket-SSL noarch 2.066-4.module+el8.3.0+6446+594cad75 ubi-8-appstream 298 k perl-Mozilla-CA noarch 20160104-7.module+el8.3.0+6498+9eecfe51 ubi-8-appstream 15 k Enabling module streams: perl 5.26 perl-IO-Socket-SSL 2.066 perl-libwww-perl 6.34 Transaction Summary ================================================================================================ Install 81 Packages Total download size: 54 M Installed size: 175 M Downloading Packages: [MIRROR] openssh-8.0p1-6.el8_4.2.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/o/openssh-8.0p1-6.el8_4.2.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] ncurses-6.1-7.20180224.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/n/ncurses-6.1-7.20180224.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] perl-Pod-Perldoc-3.28-396.el8.noarch.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/p/perl-Pod-Perldoc-3.28-396.el8.noarch.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] (1/81): perl-Pod-Perldoc-3.28-396.el8.noarch.rp 18 kB/s | 88 kB 00:05 (2/81): ncurses-6.1-7.20180224.el8.x86_64.rpm 77 kB/s | 387 kB 00:05 (3/81): pcre-utf32-8.42-4.el8.x86_64.rpm 25 MB/s | 186 kB 00:00 (4/81): openssh-8.0p1-6.el8_4.2.x86_64.rpm 104 kB/s | 521 kB 00:05 (5/81): perl-Term-Cap-1.17-395.el8.noarch.rpm 7.6 MB/s | 23 kB 00:00 (6/81): perl-threads-2.21-2.el8.x86_64.rpm 15 MB/s | 61 kB 00:00 (7/81): keyutils-libs-devel-1.5.10-6.el8.x86_64 15 MB/s | 48 kB 00:00 (8/81): perl-Pod-Escapes-1.07-395.el8.noarch.rp 7.8 MB/s | 20 kB 00:00 (9/81): emacs-filesystem-26.1-5.el8.noarch.rpm 20 MB/s | 69 kB 00:00 (10/81): glibc-headers-2.28-151.el8.x86_64.rpm 41 MB/s | 478 kB 00:00 (11/81): openssl-1.1.1g-15.el8_3.x86_64.rpm 46 MB/s | 707 kB 00:00 (12/81): libsepol-devel-2.9-2.el8.x86_64.rpm 25 MB/s | 86 kB 00:00 (13/81): perl-macros-5.26.3-419.el8_4.1.x86_64. 22 MB/s | 72 kB 00:00 (14/81): krb5-devel-1.18.2-8.el8.x86_64.rpm 52 MB/s | 559 kB 00:00 (15/81): perl-Scalar-List-Utils-1.49-2.el8.x86_ 22 MB/s | 68 kB 00:00 (16/81): openssh-clients-8.0p1-6.el8_4.2.x86_64 58 MB/s | 667 kB 00:00 (17/81): perl-Encode-2.97-3.el8.x86_64.rpm 56 MB/s | 1.5 MB 00:00 (18/81): perl-podlators-4.11-1.el8.noarch.rpm 33 MB/s | 118 kB 00:00 (19/81): perl-MIME-Base64-3.15-396.el8.x86_64.r 12 MB/s | 31 kB 00:00 (20/81): libselinux-devel-2.9-5.el8.x86_64.rpm 34 MB/s | 200 kB 00:00 (21/81): perl-threads-shared-1.58-2.el8.x86_64. 17 MB/s | 48 kB 00:00 (22/81): perl-Term-ANSIColor-4.06-396.el8.noarc 17 MB/s | 46 kB 00:00 (23/81): perl-Getopt-Long-2.50-4.el8.noarch.rpm 22 MB/s | 63 kB 00:00 (24/81): openssl-devel-1.1.1g-15.el8_3.x86_64.r 86 MB/s | 2.3 MB 00:00 (25/81): perl-HTTP-Tiny-0.074-1.el8.noarch.rpm 17 MB/s | 58 kB 00:00 (26/81): pcre-utf16-8.42-4.el8.x86_64.rpm 50 MB/s | 195 kB 00:00 (27/81): libedit-3.1-23.20170329cvs.el8.x86_64. 27 MB/s | 102 kB 00:00 (28/81): perl-Carp-1.42-396.el8.noarch.rpm 13 MB/s | 30 kB 00:00 (29/81): perl-File-Path-2.15-2.el8.noarch.rpm 14 MB/s | 38 kB 00:00 (30/81): perl-Unicode-Normalize-1.25-396.el8.x8 27 MB/s | 82 kB 00:00 (31/81): perl-Exporter-5.72-396.el8.noarch.rpm 11 MB/s | 34 kB 00:00 (32/81): perl-interpreter-5.26.3-419.el8_4.1.x8 108 MB/s | 6.3 MB 00:00 (33/81): libcurl-devel-7.61.1-18.el8.x86_64.rpm 51 MB/s | 833 kB 00:00 (34/81): perl-parent-0.237-1.el8.noarch.rpm 5.7 MB/s | 20 kB 00:00 (35/81): pcre-devel-8.42-4.el8.x86_64.rpm 46 MB/s | 551 kB 00:00 (36/81): perl-Storable-3.11-3.el8.x86_64.rpm 32 MB/s | 98 kB 00:00 (37/81): perl-PathTools-3.74-1.el8.x86_64.rpm 30 MB/s | 90 kB 00:00 (38/81): curl-7.61.1-18.el8.x86_64.rpm 59 MB/s | 353 kB 00:00 (39/81): perl-Data-Dumper-2.167-399.el8.x86_64. 19 MB/s | 58 kB 00:00 (40/81): perl-constant-1.33-396.el8.noarch.rpm 10 MB/s | 25 kB 00:00 (41/81): perl-File-Temp-0.230.600-1.el8.noarch. 24 MB/s | 63 kB 00:00 (42/81): libcom_err-devel-1.45.6-1.el8.x86_64.r 15 MB/s | 38 kB 00:00 (43/81): libverto-devel-0.3.0-5.el8.x86_64.rpm 7.7 MB/s | 18 kB 00:00 (44/81): perl-Text-ParseWords-3.30-395.el8.noar 7.1 MB/s | 18 kB 00:00 (45/81): perl-IO-1.38-419.el8_4.1.x86_64.rpm 42 MB/s | 142 kB 00:00 (46/81): net-tools-2.0-0.52.20160912git.el8.x86 62 MB/s | 322 kB 00:00 (47/81): libkadm5-1.18.2-8.el8.x86_64.rpm 55 MB/s | 186 kB 00:00 (48/81): perl-Time-Local-1.280-1.el8.noarch.rpm 12 MB/s | 34 kB 00:00 (49/81): perl-Socket-2.027-3.el8.x86_64.rpm 21 MB/s | 59 kB 00:00 (50/81): perl-Pod-Usage-1.69-395.el8.noarch.rpm 12 MB/s | 34 kB 00:00 (51/81): groff-base-1.22.3-18.el8.x86_64.rpm 117 MB/s | 1.0 MB 00:00 (52/81): glib2-devel-2.56.4-10.el8_4.1.x86_64.r 77 MB/s | 424 kB 00:00 (53/81): perl-libs-5.26.3-419.el8_4.1.x86_64.rp 97 MB/s | 1.6 MB 00:00 (54/81): perl-Errno-1.28-419.el8_4.1.x86_64.rpm 24 MB/s | 76 kB 00:00 (55/81): pcre-cpp-8.42-4.el8.x86_64.rpm 13 MB/s | 47 kB 00:00 (56/81): binutils-2.30-93.el8.x86_64.rpm 123 MB/s | 5.8 MB 00:00 (57/81): glibc-devel-2.28-151.el8.x86_64.rpm 62 MB/s | 1.0 MB 00:00 (58/81): perl-Pod-Simple-3.35-395.el8.noarch.rp 55 MB/s | 213 kB 00:00 (59/81): perl-Text-Tabs+Wrap-2013.0523-395.el8. 2.3 MB/s | 24 kB 00:00 (60/81): kernel-headers-4.18.0-305.12.1.el8_4.x 124 MB/s | 7.1 MB 00:00 [MIRROR] perl-IO-Socket-IP-0.39-5.el8.noarch.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/p/perl-IO-Socket-IP-0.39-5.el8.noarch.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] [MIRROR] git-core-2.27.0-1.el8.x86_64.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/g/git-core-2.27.0-1.el8.x86_64.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] [MIRROR] perl-URI-1.73-3.el8.noarch.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/p/perl-URI-1.73-3.el8.noarch.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] (61/81): perl-IO-Socket-IP-0.39-5.el8.noarch.rp 9.6 kB/s | 47 kB 00:04 (62/81): perl-URI-1.73-3.el8.noarch.rpm 24 kB/s | 116 kB 00:04 (63/81): perl-Git-2.27.0-1.el8.noarch.rpm 22 MB/s | 78 kB 00:00 (64/81): perl-Net-SSLeay-1.88-1.module+el8.3.0+ 68 MB/s | 379 kB 00:00 (65/81): perl-libnet-3.11-3.el8.noarch.rpm 33 MB/s | 121 kB 00:00 (66/81): perl-TermReadKey-2.37-7.el8.x86_64.rpm 14 MB/s | 40 kB 00:00 (67/81): perl-Error-0.17025-2.el8.noarch.rpm 16 MB/s | 46 kB 00:00 (68/81): vim-filesystem-8.0.1763-15.el8.noarch. 17 MB/s | 48 kB 00:00 (69/81): vim-enhanced-8.0.1763-15.el8.x86_64.rp 116 MB/s | 1.4 MB 00:00 (70/81): perl-Digest-MD5-2.55-396.el8.x86_64.rp 8.7 MB/s | 37 kB 00:00 (71/81): perl-IO-Socket-SSL-2.066-4.module+el8. 58 MB/s | 298 kB 00:00 (72/81): perl-Mozilla-CA-20160104-7.module+el8. 6.6 MB/s | 15 kB 00:00 (73/81): git-2.27.0-1.el8.x86_64.rpm 47 MB/s | 164 kB 00:00 (74/81): git-core-2.27.0-1.el8.x86_64.rpm 1.2 MB/s | 5.7 MB 00:04 (75/81): perl-Digest-1.17-395.el8.noarch.rpm 3.3 MB/s | 27 kB 00:00 (76/81): git-core-doc-2.27.0-1.el8.noarch.rpm 100 MB/s | 2.5 MB 00:00 (77/81): cmake-filesystem-3.18.2-11.el8_4.x86_6 8.4 MB/s | 44 kB 00:00 (78/81): libX11-common-1.6.8-4.el8.noarch.rpm 35 MB/s | 158 kB 00:00 (79/81): gpm-libs-1.20.7-17.el8.x86_64.rpm 14 MB/s | 39 kB 00:00 (80/81): libxml2-devel-2.9.7-9.el8_4.2.x86_64.r 111 MB/s | 1.0 MB 00:00 (81/81): vim-common-8.0.1763-15.el8.x86_64.rpm 150 MB/s | 6.3 MB 00:00 -------------------------------------------------------------------------------- Total 5.3 MB/s | 54 MB 00:10 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : gpm-libs-1.20.7-17.el8.x86_64 1/81 Running scriptlet: gpm-libs-1.20.7-17.el8.x86_64 1/81 Installing : cmake-filesystem-3.18.2-11.el8_4.x86_64 2/81 Installing : vim-filesystem-2:8.0.1763-15.el8.noarch 3/81 Installing : vim-common-2:8.0.1763-15.el8.x86_64 4/81 Installing : kernel-headers-4.18.0-305.12.1.el8_4.x86_64 5/81 Running scriptlet: glibc-headers-2.28-151.el8.x86_64 6/81 Installing : glibc-headers-2.28-151.el8.x86_64 6/81 Installing : pcre-cpp-8.42-4.el8.x86_64 7/81 Installing : groff-base-1.22.3-18.el8.x86_64 8/81 Installing : libkadm5-1.18.2-8.el8.x86_64 9/81 Installing : libverto-devel-0.3.0-5.el8.x86_64 10/81 Installing : libcom_err-devel-1.45.6-1.el8.x86_64 11/81 Installing : libedit-3.1-23.20170329cvs.el8.x86_64 12/81 Installing : pcre-utf16-8.42-4.el8.x86_64 13/81 Installing : libsepol-devel-2.9-2.el8.x86_64 14/81 Installing : libselinux-devel-2.9-5.el8.x86_64 15/81 Installing : emacs-filesystem-1:26.1-5.el8.noarch 16/81 Installing : keyutils-libs-devel-1.5.10-6.el8.x86_64 17/81 Installing : krb5-devel-1.18.2-8.el8.x86_64 18/81 Installing : openssl-1:1.1.1g-15.el8_3.x86_64 19/81 Installing : pcre-utf32-8.42-4.el8.x86_64 20/81 Installing : pcre-devel-8.42-4.el8.x86_64 21/81 Installing : ncurses-6.1-7.20180224.el8.x86_64 22/81 Installing : perl-Digest-1.17-395.el8.noarch 23/81 Installing : perl-Digest-MD5-2.55-396.el8.x86_64 24/81 Installing : perl-Data-Dumper-2.167-399.el8.x86_64 25/81 Installing : perl-libnet-3.11-3.el8.noarch 26/81 Installing : perl-Net-SSLeay-1.88-1.module+el8.3.0+6446+594cad7 27/81 Installing : perl-URI-1.73-3.el8.noarch 28/81 Installing : perl-Pod-Escapes-1:1.07-395.el8.noarch 29/81 Installing : perl-Time-Local-1:1.280-1.el8.noarch 30/81 Installing : perl-IO-Socket-IP-0.39-5.el8.noarch 31/81 Installing : perl-Mozilla-CA-20160104-7.module+el8.3.0+6498+9ee 32/81 Installing : perl-IO-Socket-SSL-2.066-4.module+el8.3.0+6446+594 33/81 Installing : perl-Term-ANSIColor-4.06-396.el8.noarch 34/81 Installing : perl-File-Temp-0.230.600-1.el8.noarch 35/81 Installing : perl-HTTP-Tiny-0.074-1.el8.noarch 36/81 Installing : perl-Pod-Simple-1:3.35-395.el8.noarch 37/81 Installing : perl-Term-Cap-1.17-395.el8.noarch 38/81 Installing : perl-Pod-Perldoc-3.28-396.el8.noarch 39/81 Installing : perl-podlators-4.11-1.el8.noarch 40/81 Installing : perl-Text-ParseWords-3.30-395.el8.noarch 41/81 Installing : perl-Pod-Usage-4:1.69-395.el8.noarch 42/81 Installing : perl-MIME-Base64-3.15-396.el8.x86_64 43/81 Installing : perl-Storable-1:3.11-3.el8.x86_64 44/81 Installing : perl-Getopt-Long-1:2.50-4.el8.noarch 45/81 Installing : perl-Socket-4:2.027-3.el8.x86_64 46/81 Installing : perl-Errno-1.28-419.el8_4.1.x86_64 47/81 Installing : perl-Encode-4:2.97-3.el8.x86_64 48/81 Installing : perl-macros-4:5.26.3-419.el8_4.1.x86_64 49/81 Installing : perl-Scalar-List-Utils-3:1.49-2.el8.x86_64 50/81 Installing : perl-Carp-1.42-396.el8.noarch 51/81 Installing : perl-Exporter-5.72-396.el8.noarch 52/81 Installing : perl-libs-4:5.26.3-419.el8_4.1.x86_64 53/81 Installing : perl-parent-1:0.237-1.el8.noarch 54/81 Installing : perl-threads-shared-1.58-2.el8.x86_64 55/81 Installing : perl-threads-1:2.21-2.el8.x86_64 56/81 Installing : perl-Unicode-Normalize-1.25-396.el8.x86_64 57/81 Installing : perl-constant-1.33-396.el8.noarch 58/81 Installing : perl-PathTools-3.74-1.el8.x86_64 59/81 Installing : perl-File-Path-2.15-2.el8.noarch 60/81 Installing : perl-IO-1.38-419.el8_4.1.x86_64 61/81 Installing : perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch 62/81 Installing : perl-interpreter-4:5.26.3-419.el8_4.1.x86_64 63/81 Installing : perl-TermReadKey-2.37-7.el8.x86_64 64/81 Installing : perl-Error-1:0.17025-2.el8.noarch 65/81 Running scriptlet: openssh-8.0p1-6.el8_4.2.x86_64 66/81 Installing : openssh-8.0p1-6.el8_4.2.x86_64 66/81 Installing : openssh-clients-8.0p1-6.el8_4.2.x86_64 67/81 Installing : git-core-2.27.0-1.el8.x86_64 68/81 Installing : git-core-doc-2.27.0-1.el8.noarch 69/81 Installing : perl-Git-2.27.0-1.el8.noarch 70/81 Installing : git-2.27.0-1.el8.x86_64 71/81 Installing : vim-enhanced-2:8.0.1763-15.el8.x86_64 72/81 Installing : glib2-devel-2.56.4-10.el8_4.1.x86_64 73/81 Installing : openssl-devel-1:1.1.1g-15.el8_3.x86_64 74/81 Installing : glibc-devel-2.28-151.el8.x86_64 75/81 Running scriptlet: glibc-devel-2.28-151.el8.x86_64 75/81 Installing : libxml2-devel-2.9.7-9.el8_4.2.x86_64 76/81 Installing : libX11-common-1.6.8-4.el8.noarch 77/81 Installing : net-tools-2.0-0.52.20160912git.el8.x86_64 78/81 Running scriptlet: net-tools-2.0-0.52.20160912git.el8.x86_64 78/81 Installing : binutils-2.30-93.el8.x86_64 79/81 Running scriptlet: binutils-2.30-93.el8.x86_64 79/81 Installing : curl-7.61.1-18.el8.x86_64 80/81 Installing : libcurl-devel-7.61.1-18.el8.x86_64 81/81 Running scriptlet: libcurl-devel-7.61.1-18.el8.x86_64 81/81 Running scriptlet: vim-common-2:8.0.1763-15.el8.x86_64 81/81 Verifying : openssh-8.0p1-6.el8_4.2.x86_64 1/81 Verifying : ncurses-6.1-7.20180224.el8.x86_64 2/81 Verifying : perl-Pod-Perldoc-3.28-396.el8.noarch 3/81 Verifying : pcre-utf32-8.42-4.el8.x86_64 4/81 Verifying : perl-threads-1:2.21-2.el8.x86_64 5/81 Verifying : perl-Term-Cap-1.17-395.el8.noarch 6/81 Verifying : openssl-1:1.1.1g-15.el8_3.x86_64 7/81 Verifying : keyutils-libs-devel-1.5.10-6.el8.x86_64 8/81 Verifying : glibc-headers-2.28-151.el8.x86_64 9/81 Verifying : perl-Pod-Escapes-1:1.07-395.el8.noarch 10/81 Verifying : emacs-filesystem-1:26.1-5.el8.noarch 11/81 Verifying : perl-Encode-4:2.97-3.el8.x86_64 12/81 Verifying : krb5-devel-1.18.2-8.el8.x86_64 13/81 Verifying : libsepol-devel-2.9-2.el8.x86_64 14/81 Verifying : perl-macros-4:5.26.3-419.el8_4.1.x86_64 15/81 Verifying : perl-Scalar-List-Utils-3:1.49-2.el8.x86_64 16/81 Verifying : openssh-clients-8.0p1-6.el8_4.2.x86_64 17/81 Verifying : perl-interpreter-4:5.26.3-419.el8_4.1.x86_64 18/81 Verifying : openssl-devel-1:1.1.1g-15.el8_3.x86_64 19/81 Verifying : perl-podlators-4.11-1.el8.noarch 20/81 Verifying : perl-MIME-Base64-3.15-396.el8.x86_64 21/81 Verifying : libselinux-devel-2.9-5.el8.x86_64 22/81 Verifying : perl-threads-shared-1.58-2.el8.x86_64 23/81 Verifying : perl-Term-ANSIColor-4.06-396.el8.noarch 24/81 Verifying : perl-Getopt-Long-1:2.50-4.el8.noarch 25/81 Verifying : perl-HTTP-Tiny-0.074-1.el8.noarch 26/81 Verifying : pcre-utf16-8.42-4.el8.x86_64 27/81 Verifying : libedit-3.1-23.20170329cvs.el8.x86_64 28/81 Verifying : perl-Carp-1.42-396.el8.noarch 29/81 Verifying : perl-File-Path-2.15-2.el8.noarch 30/81 Verifying : perl-Unicode-Normalize-1.25-396.el8.x86_64 31/81 Verifying : libcurl-devel-7.61.1-18.el8.x86_64 32/81 Verifying : perl-Exporter-5.72-396.el8.noarch 33/81 Verifying : pcre-devel-8.42-4.el8.x86_64 34/81 Verifying : perl-parent-1:0.237-1.el8.noarch 35/81 Verifying : curl-7.61.1-18.el8.x86_64 36/81 Verifying : perl-Storable-1:3.11-3.el8.x86_64 37/81 Verifying : perl-PathTools-3.74-1.el8.x86_64 38/81 Verifying : perl-Data-Dumper-2.167-399.el8.x86_64 39/81 Verifying : perl-constant-1.33-396.el8.noarch 40/81 Verifying : perl-File-Temp-0.230.600-1.el8.noarch 41/81 Verifying : libcom_err-devel-1.45.6-1.el8.x86_64 42/81 Verifying : binutils-2.30-93.el8.x86_64 43/81 Verifying : libverto-devel-0.3.0-5.el8.x86_64 44/81 Verifying : perl-Text-ParseWords-3.30-395.el8.noarch 45/81 Verifying : net-tools-2.0-0.52.20160912git.el8.x86_64 46/81 Verifying : perl-IO-1.38-419.el8_4.1.x86_64 47/81 Verifying : libkadm5-1.18.2-8.el8.x86_64 48/81 Verifying : perl-Time-Local-1:1.280-1.el8.noarch 49/81 Verifying : perl-Socket-4:2.027-3.el8.x86_64 50/81 Verifying : perl-Pod-Usage-4:1.69-395.el8.noarch 51/81 Verifying : groff-base-1.22.3-18.el8.x86_64 52/81 Verifying : perl-libs-4:5.26.3-419.el8_4.1.x86_64 53/81 Verifying : glib2-devel-2.56.4-10.el8_4.1.x86_64 54/81 Verifying : perl-Errno-1.28-419.el8_4.1.x86_64 55/81 Verifying : glibc-devel-2.28-151.el8.x86_64 56/81 Verifying : pcre-cpp-8.42-4.el8.x86_64 57/81 Verifying : kernel-headers-4.18.0-305.12.1.el8_4.x86_64 58/81 Verifying : perl-Pod-Simple-1:3.35-395.el8.noarch 59/81 Verifying : perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch 60/81 Verifying : perl-IO-Socket-IP-0.39-5.el8.noarch 61/81 Verifying : git-core-2.27.0-1.el8.x86_64 62/81 Verifying : perl-URI-1.73-3.el8.noarch 63/81 Verifying : perl-Git-2.27.0-1.el8.noarch 64/81 Verifying : perl-Net-SSLeay-1.88-1.module+el8.3.0+6446+594cad7 65/81 Verifying : perl-libnet-3.11-3.el8.noarch 66/81 Verifying : perl-TermReadKey-2.37-7.el8.x86_64 67/81 Verifying : vim-enhanced-2:8.0.1763-15.el8.x86_64 68/81 Verifying : perl-Error-1:0.17025-2.el8.noarch 69/81 Verifying : vim-filesystem-2:8.0.1763-15.el8.noarch 70/81 Verifying : perl-Digest-MD5-2.55-396.el8.x86_64 71/81 Verifying : git-core-doc-2.27.0-1.el8.noarch 72/81 Verifying : perl-IO-Socket-SSL-2.066-4.module+el8.3.0+6446+594 73/81 Verifying : perl-Mozilla-CA-20160104-7.module+el8.3.0+6498+9ee 74/81 Verifying : git-2.27.0-1.el8.x86_64 75/81 Verifying : perl-Digest-1.17-395.el8.noarch 76/81 Verifying : vim-common-2:8.0.1763-15.el8.x86_64 77/81 Verifying : cmake-filesystem-3.18.2-11.el8_4.x86_64 78/81 Verifying : libxml2-devel-2.9.7-9.el8_4.2.x86_64 79/81 Verifying : libX11-common-1.6.8-4.el8.noarch 80/81 Verifying : gpm-libs-1.20.7-17.el8.x86_64 81/81 Installed products updated. Installed: binutils-2.30-93.el8.x86_64 cmake-filesystem-3.18.2-11.el8_4.x86_64 curl-7.61.1-18.el8.x86_64 emacs-filesystem-1:26.1-5.el8.noarch git-2.27.0-1.el8.x86_64 git-core-2.27.0-1.el8.x86_64 git-core-doc-2.27.0-1.el8.noarch glib2-devel-2.56.4-10.el8_4.1.x86_64 glibc-devel-2.28-151.el8.x86_64 glibc-headers-2.28-151.el8.x86_64 gpm-libs-1.20.7-17.el8.x86_64 groff-base-1.22.3-18.el8.x86_64 kernel-headers-4.18.0-305.12.1.el8_4.x86_64 keyutils-libs-devel-1.5.10-6.el8.x86_64 krb5-devel-1.18.2-8.el8.x86_64 libX11-common-1.6.8-4.el8.noarch libcom_err-devel-1.45.6-1.el8.x86_64 libcurl-devel-7.61.1-18.el8.x86_64 libedit-3.1-23.20170329cvs.el8.x86_64 libkadm5-1.18.2-8.el8.x86_64 libselinux-devel-2.9-5.el8.x86_64 libsepol-devel-2.9-2.el8.x86_64 libverto-devel-0.3.0-5.el8.x86_64 libxml2-devel-2.9.7-9.el8_4.2.x86_64 ncurses-6.1-7.20180224.el8.x86_64 net-tools-2.0-0.52.20160912git.el8.x86_64 openssh-8.0p1-6.el8_4.2.x86_64 openssh-clients-8.0p1-6.el8_4.2.x86_64 openssl-1:1.1.1g-15.el8_3.x86_64 openssl-devel-1:1.1.1g-15.el8_3.x86_64 pcre-cpp-8.42-4.el8.x86_64 pcre-devel-8.42-4.el8.x86_64 pcre-utf16-8.42-4.el8.x86_64 pcre-utf32-8.42-4.el8.x86_64 perl-Carp-1.42-396.el8.noarch perl-Data-Dumper-2.167-399.el8.x86_64 perl-Digest-1.17-395.el8.noarch perl-Digest-MD5-2.55-396.el8.x86_64 perl-Encode-4:2.97-3.el8.x86_64 perl-Errno-1.28-419.el8_4.1.x86_64 perl-Error-1:0.17025-2.el8.noarch perl-Exporter-5.72-396.el8.noarch perl-File-Path-2.15-2.el8.noarch perl-File-Temp-0.230.600-1.el8.noarch perl-Getopt-Long-1:2.50-4.el8.noarch perl-Git-2.27.0-1.el8.noarch perl-HTTP-Tiny-0.074-1.el8.noarch perl-IO-1.38-419.el8_4.1.x86_64 perl-IO-Socket-IP-0.39-5.el8.noarch perl-IO-Socket-SSL-2.066-4.module+el8.3.0+6446+594cad75.noarch perl-MIME-Base64-3.15-396.el8.x86_64 perl-Mozilla-CA-20160104-7.module+el8.3.0+6498+9eecfe51.noarch perl-Net-SSLeay-1.88-1.module+el8.3.0+6446+594cad75.x86_64 perl-PathTools-3.74-1.el8.x86_64 perl-Pod-Escapes-1:1.07-395.el8.noarch perl-Pod-Perldoc-3.28-396.el8.noarch perl-Pod-Simple-1:3.35-395.el8.noarch perl-Pod-Usage-4:1.69-395.el8.noarch perl-Scalar-List-Utils-3:1.49-2.el8.x86_64 perl-Socket-4:2.027-3.el8.x86_64 perl-Storable-1:3.11-3.el8.x86_64 perl-Term-ANSIColor-4.06-396.el8.noarch perl-Term-Cap-1.17-395.el8.noarch perl-TermReadKey-2.37-7.el8.x86_64 perl-Text-ParseWords-3.30-395.el8.noarch perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch perl-Time-Local-1:1.280-1.el8.noarch perl-URI-1.73-3.el8.noarch perl-Unicode-Normalize-1.25-396.el8.x86_64 perl-constant-1.33-396.el8.noarch perl-interpreter-4:5.26.3-419.el8_4.1.x86_64 perl-libnet-3.11-3.el8.noarch perl-libs-4:5.26.3-419.el8_4.1.x86_64 perl-macros-4:5.26.3-419.el8_4.1.x86_64 perl-parent-1:0.237-1.el8.noarch perl-podlators-4.11-1.el8.noarch perl-threads-1:2.21-2.el8.x86_64 perl-threads-shared-1.58-2.el8.x86_64 vim-common-2:8.0.1763-15.el8.x86_64 vim-enhanced-2:8.0.1763-15.el8.x86_64 vim-filesystem-2:8.0.1763-15.el8.noarch Complete! STEP 9: COPY *.tar.gz /tmp/repo/ STEP 10: COPY *.rpm ./ STEP 11: COPY ./scripts/*.gpg ./ STEP 12: RUN rpm --import ./RPM-GPG-KEY-EPEL-8.gpg ./RPM-GPG-KEY-APPSTREAM.gpg && rm -f ./*.gpg STEP 13: RUN yum localinstall -y libsodium-1.0.18-2.el8.x86_64.rpm libsodium-devel-1.0.18-2.el8.x86_64.rpm Last metadata expiration check: 0:01:04 ago on Tue Sep 7 20:47:22 2021. Dependencies resolved. ================================================================================ Package Architecture Version Repository Size ================================================================================ Installing: libsodium x86_64 1.0.18-2.el8 @commandline 162 k libsodium-devel x86_64 1.0.18-2.el8 @commandline 1.1 M Transaction Summary ================================================================================ Install 2 Packages Total size: 1.3 M Installed size: 4.0 M Downloading Packages: Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libsodium-1.0.18-2.el8.x86_64 1/2 Installing : libsodium-devel-1.0.18-2.el8.x86_64 2/2 Running scriptlet: libsodium-devel-1.0.18-2.el8.x86_64 2/2 Verifying : libsodium-1.0.18-2.el8.x86_64 1/2 Verifying : libsodium-devel-1.0.18-2.el8.x86_64 2/2 Installed products updated. Installed: libsodium-1.0.18-2.el8.x86_64 libsodium-devel-1.0.18-2.el8.x86_64 Complete! STEP 14: RUN mkdir /tmp/repo/R_AIML_Deps && tar xvf /tmp/repo/R_AIML_Deps.tar.gz -C /tmp/repo/R_AIML_Deps && rm -f /tmp/repo/R_AIML_Deps/repo/glib2-devel-2.56.4-10.el8_4.x86_64.rpm && yum localinstall -y /tmp/repo/R_AIML_Deps/repo/*.rpm ./repo/ ./repo/libXxf86vm-1.1.4-9.el8.x86_64.rpm ./repo/libX11-xcb-1.6.8-4.el8.x86_64.rpm ./repo/avahi-libs-0.7-20.el8.x86_64.rpm ./repo/proj-datumgrid-1.8-6.3.2.4.el8.noarch.rpm ./repo/libgs-9.27-1.el8.x86_64.rpm ./repo/minizip-2.8.9-2.el8.x86_64.rpm ./repo/ImageMagick-c++-6.9.10.86-1.el8.x86_64.rpm ./repo/librsvg2-2.42.7-4.el8.x86_64.rpm ./repo/urw-base35-nimbus-mono-ps-fonts-20170801-10.el8.noarch.rpm ./repo/qt5-qtbase-common-5.12.5-8.el8.noarch.rpm ./repo/pcre-utf32-8.42-4.el8.x86_64.rpm ./repo/protobuf-compiler-3.5.0-13.el8.x86_64.rpm ./repo/openblas-threads64_-0.3.12-1.el8.x86_64.rpm ./repo/libXpm-3.5.12-8.el8.x86_64.rpm ./repo/libICE-devel-1.0.9-15.el8.x86_64.rpm ./repo/harfbuzz-icu-1.7.5-3.el8.x86_64.rpm ./repo/libtool-ltdl-2.4.6-25.el8.x86_64.rpm ./repo/mesa-libGL-20.3.3-2.el8.x86_64.rpm ./repo/libgta-1.2.1-1.el8.x86_64.rpm ./repo/adobe-mappings-cmap-deprecated-20171205-3.el8.noarch.rpm ./repo/qt5-qtbase-gui-5.12.5-8.el8.x86_64.rpm ./repo/libxshmfence-1.3-2.el8.x86_64.rpm ./repo/xcb-util-renderutil-0.3.9-10.el8.x86_64.rpm ./repo/xorg-x11-proto-devel-2020.1-3.el8.noarch.rpm ./repo/qt5-qtbase-5.12.5-8.el8.x86_64.rpm ./repo/libpq-13.2-1.el8.x86_64.rpm ./repo/cfitsio-3.47-1.el8.x86_64.rpm ./repo/armadillo-9.700.2-1.el8.x86_64.rpm ./repo/libwebp-devel-1.0.0-1.el8.x86_64.rpm ./repo/freexl-1.0.6-1.el8.x86_64.rpm ./repo/mesa-libGLU-9.0.0-15.el8.x86_64.rpm ./repo/poppler-0.66.0-27.el8.x86_64.rpm ./repo/xorg-x11-server-utils-7.7-27.el8.x86_64.rpm ./repo/python36-3.6.8-2.module+el8.1.0+3334+5cb623d7.x86_64.rpm ./repo/libevdev-1.8.0-1.el8.x86_64.rpm ./repo/urw-base35-nimbus-roman-fonts-20170801-10.el8.noarch.rpm ./repo/lapack-3.8.0-8.el8.x86_64.rpm ./repo/openjpeg2-2.3.1-6.el8.x86_64.rpm ./repo/krb5-devel-1.18.2-8.el8.x86_64.rpm ./repo/google-droid-sans-fonts-20120715-13.el8.noarch.rpm ./repo/ImageMagick-libs-6.9.10.86-1.el8.x86_64.rpm ./repo/hdf5-1.10.5-4.el8.x86_64.rpm ./repo/OpenEXR-libs-2.2.0-12.el8.x86_64.rpm ./repo/openblas-0.3.12-1.el8.x86_64.rpm ./repo/glx-utils-8.4.0-5.20181118git1830dcb.el8.x86_64.rpm ./repo/libglvnd-glx-1.3.2-1.el8.x86_64.rpm ./repo/libXau-devel-1.0.9-3.el8.x86_64.rpm ./repo/libdrm-2.4.103-1.el8.x86_64.rpm ./repo/libglvnd-gles-1.3.2-1.el8.x86_64.rpm ./repo/OpenEXR-devel-2.2.0-12.el8.x86_64.rpm ./repo/adobe-mappings-cmap-20171205-3.el8.noarch.rpm ./repo/poppler-data-0.4.9-1.el8.noarch.rpm ./repo/mariadb-connector-c-config-3.1.11-2.el8_3.noarch.rpm ./repo/libgudev-232-4.el8.x86_64.rpm ./repo/pcre-cpp-8.42-4.el8.x86_64.rpm ./repo/openssl-devel-1.1.1g-15.el8_3.x86_64.rpm ./repo/udunits2-2.2.26-5.el8.x86_64.rpm ./repo/mesa-libEGL-20.3.3-2.el8.x86_64.rpm ./repo/libaec-1.0.2-3.el8.x86_64.rpm ./repo/libglvnd-devel-1.3.2-1.el8.x86_64.rpm ./repo/gl-manpages-1.1-15.20161227.el8.noarch.rpm ./repo/libxkbcommon-x11-0.9.1-1.el8.x86_64.rpm ./repo/glib2-devel-2.56.4-10.el8_4.x86_64.rpm ./repo/arpack-3.7.0-1.el8.x86_64.rpm ./repo/libspatialite-5.0.0-1.el8.x86_64.rpm ./repo/libwacom-1.6-2.el8.x86_64.rpm ./repo/urw-base35-gothic-fonts-20170801-10.el8.noarch.rpm ./repo/libgs-devel-9.27-1.el8.x86_64.rpm ./repo/fftw-libs-double-3.3.5-11.el8.x86_64.rpm ./repo/cups-libs-2.2.6-38.el8.x86_64.rpm ./repo/xorg-x11-fonts-ISO8859-1-100dpi-7.5-19.el8.noarch.rpm ./repo/gpsbabel-1.6.0-3.el8.x86_64.rpm ./repo/xcb-util-keysyms-0.4.0-7.el8.x86_64.rpm ./repo/xcb-util-image-0.4.0-9.el8.x86_64.rpm ./repo/libkml-1.3.0-24.el8.x86_64.rpm ./repo/libXxf86misc-1.0.4-1.el8.x86_64.rpm ./repo/xkeyboard-config-2.28-1.el8.noarch.rpm ./repo/ImageMagick-6.9.10.86-1.el8.x86_64.rpm ./repo/atlas-3.10.3-8.el8.x86_64.rpm ./repo/libX11-devel-1.6.8-4.el8.x86_64.rpm ./repo/netcdf-4.7.0-2.el8.x86_64.rpm ./repo/pixman-devel-0.38.4-1.el8.x86_64.rpm ./repo/xcb-util-wm-0.4.1-12.el8.x86_64.rpm ./repo/geos-3.7.2-1.el8.x86_64.rpm ./repo/urw-base35-z003-fonts-20170801-10.el8.noarch.rpm ./repo/urw-base35-fonts-20170801-10.el8.noarch.rpm ./repo/libijs-0.35-5.el8.x86_64.rpm ./repo/ilmbase-2.2.0-13.el8.x86_64.rpm ./repo/ImageMagick-devel-6.9.10.86-1.el8.x86_64.rpm ./repo/libSM-devel-1.2.3-1.el8.x86_64.rpm ./repo/http-parser-2.8.0-9.el8.x86_64.rpm ./repo/libgeotiff-1.5.1-1.el8.x86_64.rpm ./repo/urw-base35-bookman-fonts-20170801-10.el8.noarch.rpm ./repo/libpciaccess-0.14-1.el8.x86_64.rpm ./repo/mcpp-2.7.2-20.el8.x86_64.rpm ./repo/mesa-libGLU-devel-9.0.0-15.el8.x86_64.rpm ./repo/libusb-0.1.5-12.el8.x86_64.rpm ./repo/libsodium-devel-1.0.18-2.el8.x86_64.rpm ./repo/harfbuzz-devel-1.7.5-3.el8.x86_64.rpm ./repo/jasper-libs-2.0.14-4.el8.x86_64.rpm ./repo/libraqm-0.7.0-4.el8.x86_64.rpm ./repo/unixODBC-2.3.7-1.el8.x86_64.rpm ./repo/libxkbcommon-0.9.1-1.el8.x86_64.rpm ./repo/lcms2-devel-2.9-2.el8.x86_64.rpm ./repo/cairo-devel-1.15.12-3.el8.x86_64.rpm ./repo/libwayland-client-1.17.0-1.el8.x86_64.rpm ./repo/libwacom-data-1.6-2.el8.noarch.rpm ./repo/python3-setuptools-39.2.0-6.el8.noarch.rpm ./repo/libbsd-0.9.1-4.el8.x86_64.rpm ./repo/protobuf-devel-3.5.0-13.el8.x86_64.rpm ./repo/urw-base35-fonts-common-20170801-10.el8.noarch.rpm ./repo/platform-python-pip-9.0.3-19.el8.noarch.rpm ./repo/uriparser-0.9.3-2.el8.x86_64.rpm ./repo/libtiff-devel-4.0.9-18.el8.x86_64.rpm ./repo/libglvnd-core-devel-1.3.2-1.el8.x86_64.rpm ./repo/libwayland-server-1.17.0-1.el8.x86_64.rpm ./repo/proj-6.3.2-4.el8.x86_64.rpm ./repo/urw-base35-nimbus-sans-fonts-20170801-10.el8.noarch.rpm ./repo/python3-pip-9.0.3-19.el8.noarch.rpm ./repo/libXrender-devel-0.9.10-7.el8.x86_64.rpm ./repo/mesa-libglapi-20.3.3-2.el8.x86_64.rpm ./repo/libXext-devel-1.3.4-1.el8.x86_64.rpm ./repo/jasper-devel-2.0.14-4.el8.x86_64.rpm ./repo/graphite2-devel-1.3.10-10.el8.x86_64.rpm ./repo/jbig2dec-libs-0.16-1.el8.x86_64.rpm ./repo/repodata/ 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./repo/libgit2-0.26.8-2.el8.x86_64.rpm ./repo/libpaper-1.1.24-22.el8.x86_64.rpm ./repo/LibRaw-0.19.5-2.el8.x86_64.rpm ./repo/shapelib-1.5.0-1.el8.x86_64.rpm ./repo/gd-2.2.5-7.el8.x86_64.rpm ./repo/libglvnd-1.3.2-1.el8.x86_64.rpm ./repo/blas-3.8.0-8.el8.x86_64.rpm ./repo/xcb-util-0.4.0-10.el8.x86_64.rpm ./repo/xerces-c-3.2.2-3.el8.x86_64.rpm ./repo/mariadb-connector-c-3.1.11-2.el8_3.x86_64.rpm ./repo/urw-base35-c059-fonts-20170801-10.el8.noarch.rpm ./repo/libgit2-devel-0.26.8-2.el8.x86_64.rpm ./repo/libidn-1.34-5.el8.x86_64.rpm ./repo/libjpeg-turbo-devel-1.5.3-10.el8.x86_64.rpm ./repo/SuperLU-5.2.0-7.el8.x86_64.rpm ./repo/libglvnd-opengl-1.3.2-1.el8.x86_64.rpm ./repo/urw-base35-standard-symbols-ps-fonts-20170801-10.el8.noarch.rpm ./repo/libdap-3.19.1-2.el8.x86_64.rpm ./repo/mesa-libgbm-20.3.3-2.el8.x86_64.rpm ./repo/libmcpp-2.7.2-20.el8.x86_64.rpm ./repo/pcre-utf16-8.42-4.el8.x86_64.rpm ./repo/pcre-devel-8.42-4.el8.x86_64.rpm ./repo/ogdi-4.1.0-1.el8.x86_64.rpm ./repo/libwmf-lite-0.2.9-8.el8_0.x86_64.rpm ./repo/libXaw-1.0.13-10.el8.x86_64.rpm ./repo/mtdev-1.1.5-12.el8.x86_64.rpm ./repo/libglvnd-egl-1.3.2-1.el8.x86_64.rpm ./repo/libwebp-1.0.0-1.el8.x86_64.rpm ./repo/urw-base35-d050000l-fonts-20170801-10.el8.noarch.rpm ./repo/hdf-4.2.14-5.el8.x86_64.rpm ./repo/libXt-devel-1.1.5-12.el8.x86_64.rpm ./repo/protobuf-3.5.0-13.el8.x86_64.rpm ./repo/lcms2-2.9-2.el8.x86_64.rpm ./repo/ilmbase-devel-2.2.0-13.el8.x86_64.rpm Last metadata expiration check: 0:01:07 ago on Tue Sep 7 20:47:22 2021. Package krb5-devel-1.18.2-8.el8.x86_64 is already installed. Package libsodium-devel-1.0.18-2.el8.x86_64 is already installed. Package libxkbcommon-0.9.1-1.el8.x86_64 is already installed. Package openssl-devel-1:1.1.1g-15.el8_3.x86_64 is already installed. Package pcre-cpp-8.42-4.el8.x86_64 is already installed. Package pcre-devel-8.42-4.el8.x86_64 is already installed. Package pcre-utf16-8.42-4.el8.x86_64 is already installed. Package pcre-utf32-8.42-4.el8.x86_64 is already installed. Package xkeyboard-config-2.28-1.el8.noarch is already installed. Dependencies resolved. =========================================================================================================== Package Arch Version Repository Size =========================================================================================================== Installing: ImageMagick x86_64 6.9.10.86-1.el8 @commandline 195 k ImageMagick-c++ x86_64 6.9.10.86-1.el8 @commandline 194 k ImageMagick-devel x86_64 6.9.10.86-1.el8 @commandline 126 k ImageMagick-libs x86_64 6.9.10.86-1.el8 @commandline 2.3 M LibRaw x86_64 0.19.5-2.el8 @commandline 316 k OpenEXR-devel x86_64 2.2.0-12.el8 @commandline 86 k OpenEXR-libs x86_64 2.2.0-12.el8 @commandline 673 k SuperLU x86_64 5.2.0-7.el8 @commandline 191 k adobe-mappings-cmap noarch 20171205-3.el8 @commandline 2.1 M adobe-mappings-cmap-deprecated noarch 20171205-3.el8 @commandline 119 k adobe-mappings-pdf noarch 20180407-1.el8 @commandline 707 k armadillo x86_64 9.700.2-1.el8 @commandline 38 k arpack x86_64 3.7.0-1.el8 @commandline 194 k atlas x86_64 3.10.3-8.el8 @commandline 6.4 M avahi-libs x86_64 0.7-20.el8 @commandline 62 k blas x86_64 3.8.0-8.el8 @commandline 429 k cairo-devel x86_64 1.15.12-3.el8 @commandline 273 k cfitsio x86_64 3.47-1.el8 @commandline 577 k cups-libs x86_64 1:2.2.6-38.el8 @commandline 433 k fftw-libs-double x86_64 3.3.5-11.el8 @commandline 992 k freexl x86_64 1.0.6-1.el8 @commandline 34 k gd x86_64 2.2.5-7.el8 @commandline 144 k gdal x86_64 3.0.4-7.el8 @commandline 269 k gdal-libs x86_64 3.0.4-7.el8 @commandline 7.5 M geos x86_64 3.7.2-1.el8 @commandline 630 k gl-manpages noarch 1.1-15.20161227.el8 @commandline 1.2 M glx-utils x86_64 8.4.0-5.20181118git1830dcb.el8 @commandline 44 k google-droid-sans-fonts noarch 20120715-13.el8 @commandline 2.5 M gpsbabel x86_64 1.6.0-3.el8 @commandline 964 k graphite2-devel x86_64 1.3.10-10.el8 @commandline 46 k graphviz x86_64 2.40.1-40.el8 @commandline 1.7 M harfbuzz-devel x86_64 1.7.5-3.el8 @commandline 181 k harfbuzz-icu x86_64 1.7.5-3.el8 @commandline 24 k hdf x86_64 4.2.14-5.el8 @commandline 651 k hdf5 x86_64 1.10.5-4.el8 @commandline 2.1 M http-parser x86_64 2.8.0-9.el8 @commandline 42 k ilmbase x86_64 2.2.0-13.el8 @commandline 114 k ilmbase-devel x86_64 2.2.0-13.el8 @commandline 93 k jasper-devel x86_64 2.0.14-4.el8 @commandline 635 k jasper-libs x86_64 2.0.14-4.el8 @commandline 167 k jbig2dec-libs x86_64 0.16-1.el8 @commandline 72 k lapack x86_64 3.8.0-8.el8 @commandline 8.6 M lcms2 x86_64 2.9-2.el8 @commandline 165 k lcms2-devel x86_64 2.9-2.el8 @commandline 6.3 M libICE-devel x86_64 1.0.9-15.el8 @commandline 55 k libSM-devel x86_64 1.2.3-1.el8 @commandline 18 k libX11-devel x86_64 1.6.8-4.el8 @commandline 976 k libX11-xcb x86_64 1.6.8-4.el8 @commandline 14 k libXau-devel x86_64 1.0.9-3.el8 @commandline 21 k libXaw x86_64 1.0.13-10.el8 @commandline 194 k libXext-devel x86_64 1.3.4-1.el8 @commandline 81 k libXpm x86_64 3.5.12-8.el8 @commandline 58 k libXrender-devel x86_64 0.9.10-7.el8 @commandline 22 k libXt-devel x86_64 1.1.5-12.el8 @commandline 452 k libXxf86misc x86_64 1.0.4-1.el8 @commandline 23 k libXxf86vm x86_64 1.1.4-9.el8 @commandline 19 k libaec x86_64 1.0.2-3.el8 @commandline 39 k libbsd x86_64 0.9.1-4.el8 @commandline 106 k libdap x86_64 3.19.1-2.el8 @commandline 682 k libdrm x86_64 2.4.103-1.el8 @commandline 165 k libevdev x86_64 1.8.0-1.el8 @commandline 43 k libgeotiff x86_64 1.5.1-1.el8 @commandline 99 k libgit2 x86_64 0.26.8-2.el8 @commandline 454 k libgit2-devel x86_64 0.26.8-2.el8 @commandline 206 k libglvnd x86_64 1:1.3.2-1.el8 @commandline 127 k libglvnd-core-devel x86_64 1:1.3.2-1.el8 @commandline 25 k libglvnd-devel x86_64 1:1.3.2-1.el8 @commandline 184 k libglvnd-egl x86_64 1:1.3.2-1.el8 @commandline 49 k libglvnd-gles x86_64 1:1.3.2-1.el8 @commandline 40 k libglvnd-glx x86_64 1:1.3.2-1.el8 @commandline 137 k libglvnd-opengl x86_64 1:1.3.2-1.el8 @commandline 47 k libgs x86_64 9.27-1.el8 @commandline 3.1 M libgs-devel x86_64 9.27-1.el8 @commandline 63 k libgta x86_64 1.2.1-1.el8 @commandline 34 k libgudev x86_64 232-4.el8 @commandline 33 k libidn x86_64 1.34-5.el8 @commandline 239 k libijs x86_64 0.35-5.el8 @commandline 30 k libinput x86_64 1.16.3-1.el8 @commandline 215 k libjpeg-turbo-devel x86_64 1.5.3-10.el8 @commandline 109 k libkml x86_64 1.3.0-24.el8 @commandline 379 k libmcpp x86_64 2.7.2-20.el8 @commandline 81 k libpaper x86_64 1.1.24-22.el8 @commandline 45 k libpciaccess x86_64 0.14-1.el8 @commandline 32 k libpq x86_64 13.2-1.el8 @commandline 197 k libraqm x86_64 0.7.0-4.el8 @commandline 19 k librsvg2 x86_64 2.42.7-4.el8 @commandline 555 k libspatialite x86_64 5.0.0-1.el8 @commandline 3.3 M libtiff-devel x86_64 4.0.9-18.el8 @commandline 511 k libtool-ltdl x86_64 2.4.6-25.el8 @commandline 58 k libusb x86_64 1:0.1.5-12.el8 @commandline 42 k libwacom x86_64 1.6-2.el8 @commandline 42 k libwacom-data noarch 1.6-2.el8 @commandline 101 k libwayland-client x86_64 1.17.0-1.el8 @commandline 39 k libwayland-server x86_64 1.17.0-1.el8 @commandline 45 k libwebp x86_64 1.0.0-1.el8 @commandline 273 k libwebp-devel x86_64 1.0.0-1.el8 @commandline 37 k libwmf-lite x86_64 0.2.9-8.el8_0 @commandline 77 k libxcb-devel x86_64 1.13.1-1.el8 @commandline 1.1 M libxkbcommon-x11 x86_64 0.9.1-1.el8 @commandline 25 k libxshmfence x86_64 1.3-2.el8 @commandline 13 k mariadb-connector-c x86_64 3.1.11-2.el8_3 @commandline 200 k mariadb-connector-c-config noarch 3.1.11-2.el8_3 @commandline 15 k mcpp x86_64 2.7.2-20.el8 @commandline 31 k mesa-libEGL x86_64 20.3.3-2.el8 @commandline 135 k mesa-libGL x86_64 20.3.3-2.el8 @commandline 188 k mesa-libGLU x86_64 9.0.0-15.el8 @commandline 185 k mesa-libGLU-devel x86_64 9.0.0-15.el8 @commandline 15 k mesa-libgbm x86_64 20.3.3-2.el8 @commandline 57 k mesa-libglapi x86_64 20.3.3-2.el8 @commandline 65 k minizip x86_64 2.8.9-2.el8 @commandline 124 k mtdev x86_64 1.1.5-12.el8 @commandline 24 k netcdf x86_64 4.7.0-2.el8 @commandline 647 k ogdi x86_64 4.1.0-1.el8 @commandline 241 k openblas x86_64 0.3.12-1.el8 @commandline 4.6 M openblas-openmp x86_64 0.3.12-1.el8 @commandline 4.7 M openblas-threads64_ x86_64 0.3.12-1.el8 @commandline 4.6 M openjpeg2 x86_64 2.3.1-6.el8 @commandline 154 k pixman-devel x86_64 0.38.4-1.el8 @commandline 20 k platform-python-pip noarch 9.0.3-19.el8 @commandline 1.7 M poppler x86_64 0.66.0-27.el8 @commandline 929 k poppler-data noarch 0.4.9-1.el8 @commandline 2.1 M proj x86_64 6.3.2-4.el8 @commandline 2.0 M proj-datumgrid noarch 1.8-6.3.2.4.el8 @commandline 5.4 M protobuf x86_64 3.5.0-13.el8 @commandline 892 k protobuf-compiler x86_64 3.5.0-13.el8 @commandline 789 k protobuf-devel x86_64 3.5.0-13.el8 @commandline 357 k python3-pip noarch 9.0.3-19.el8 @commandline 20 k python3-setuptools noarch 39.2.0-6.el8 @commandline 163 k python36 x86_64 3.6.8-2.module+el8.1.0+3334+5cb623d7 @commandline 19 k qt5-qtbase x86_64 5.12.5-8.el8 @commandline 3.4 M qt5-qtbase-common noarch 5.12.5-8.el8 @commandline 40 k qt5-qtbase-gui x86_64 5.12.5-8.el8 @commandline 5.8 M shapelib x86_64 1.5.0-1.el8 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@commandline 22 k xcb-util-image x86_64 0.4.0-9.el8 @commandline 21 k xcb-util-keysyms x86_64 0.4.0-7.el8 @commandline 16 k xcb-util-renderutil x86_64 0.3.9-10.el8 @commandline 19 k xcb-util-wm x86_64 0.4.1-12.el8 @commandline 32 k xerces-c x86_64 3.2.2-3.el8 @commandline 991 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-19.el8 @commandline 1.1 M xorg-x11-proto-devel noarch 2020.1-3.el8 @commandline 280 k xorg-x11-server-utils x86_64 7.7-27.el8 @commandline 197 k Installing dependencies: atk x86_64 2.28.1-1.el8 ubi-8-appstream 272 k expat-devel x86_64 2.2.5-4.el8 ubi-8-baseos 55 k fontconfig-devel x86_64 2.13.1-3.el8 ubi-8-baseos 151 k freetype-devel x86_64 2.9.1-4.el8_3.1 ubi-8-baseos 464 k gdk-pixbuf2 x86_64 2.36.12-5.el8 ubi-8-baseos 467 k gdk-pixbuf2-modules x86_64 2.36.12-5.el8 ubi-8-appstream 109 k gettext x86_64 0.19.8.1-17.el8 ubi-8-baseos 1.1 M gettext-libs x86_64 0.19.8.1-17.el8 ubi-8-baseos 313 k giflib x86_64 5.1.4-3.el8 ubi-8-appstream 51 k gtk-update-icon-cache x86_64 3.22.30-6.el8 ubi-8-appstream 32 k gtk2 x86_64 2.24.32-5.el8 ubi-8-appstream 3.4 M hicolor-icon-theme noarch 0.17-2.el8 ubi-8-appstream 48 k libXcomposite x86_64 0.4.4-14.el8 ubi-8-appstream 29 k libXcursor x86_64 1.1.15-3.el8 ubi-8-appstream 36 k libXdamage x86_64 1.1.4-14.el8 ubi-8-appstream 27 k libXfixes x86_64 5.0.3-7.el8 ubi-8-appstream 25 k libXi x86_64 1.7.10-1.el8 ubi-8-appstream 49 k libXinerama x86_64 1.1.4-1.el8 ubi-8-appstream 16 k libXrandr x86_64 1.5.2-1.el8 ubi-8-appstream 34 k libcroco x86_64 0.6.12-4.el8_2.1 ubi-8-baseos 113 k libfontenc x86_64 1.1.3-8.el8 ubi-8-appstream 37 k libpng-devel x86_64 2:1.6.34-5.el8 ubi-8-baseos 328 k libuuid-devel x86_64 2.32.1-27.el8 ubi-8-baseos 97 k nspr x86_64 4.25.0-2.el8_2 ubi-8-appstream 142 k nss x86_64 3.53.1-17.el8_3 ubi-8-appstream 723 k nss-softokn x86_64 3.53.1-17.el8_3 ubi-8-appstream 484 k nss-softokn-freebl x86_64 3.53.1-17.el8_3 ubi-8-appstream 376 k nss-sysinit x86_64 3.53.1-17.el8_3 ubi-8-appstream 72 k nss-util x86_64 3.53.1-17.el8_3 ubi-8-appstream 136 k xorg-x11-font-utils x86_64 1:7.5-40.el8 ubi-8-appstream 103 k Enabling module streams: python36 3.6 Transaction Summary =========================================================================================================== Install 187 Packages Total size: 124 M Total download size: 9.2 M Installed size: 434 M Downloading Packages: [MIRROR] gdk-pixbuf2-2.36.12-5.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/g/gdk-pixbuf2-2.36.12-5.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] gettext-libs-0.19.8.1-17.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/g/gettext-libs-0.19.8.1-17.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] libpng-devel-1.6.34-5.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/l/libpng-devel-1.6.34-5.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] (1/30): gettext-libs-0.19.8.1-17.el8.x86_64.rpm 62 kB/s | 313 kB 00:05 (2/30): libpng-devel-1.6.34-5.el8.x86_64.rpm 65 kB/s | 328 kB 00:05 (3/30): expat-devel-2.2.5-4.el8.x86_64.rpm 20 MB/s | 55 kB 00:00 (4/30): gdk-pixbuf2-2.36.12-5.el8.x86_64.rpm 93 kB/s | 467 kB 00:05 (5/30): fontconfig-devel-2.13.1-3.el8.x86_64.rp 27 MB/s | 151 kB 00:00 (6/30): libcroco-0.6.12-4.el8_2.1.x86_64.rpm 24 MB/s | 113 kB 00:00 (7/30): freetype-devel-2.9.1-4.el8_3.1.x86_64.r 53 MB/s | 464 kB 00:00 (8/30): libuuid-devel-2.32.1-27.el8.x86_64.rpm 7.8 MB/s | 97 kB 00:00 (9/30): gettext-0.19.8.1-17.el8.x86_64.rpm 52 MB/s | 1.1 MB 00:00 [MIRROR] libfontenc-1.1.3-8.el8.x86_64.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/l/libfontenc-1.1.3-8.el8.x86_64.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] [MIRROR] nss-3.53.1-17.el8_3.x86_64.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/n/nss-3.53.1-17.el8_3.x86_64.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] [MIRROR] libXcursor-1.1.15-3.el8.x86_64.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/l/libXcursor-1.1.15-3.el8.x86_64.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] (10/30): libfontenc-1.1.3-8.el8.x86_64.rpm 7.3 kB/s | 37 kB 00:05 (11/30): libXcursor-1.1.15-3.el8.x86_64.rpm 7.2 kB/s | 36 kB 00:04 (12/30): libXi-1.7.10-1.el8.x86_64.rpm 13 MB/s | 49 kB 00:00 (13/30): nss-sysinit-3.53.1-17.el8_3.x86_64.rpm 14 MB/s | 72 kB 00:00 (14/30): hicolor-icon-theme-0.17-2.el8.noarch.r 14 MB/s | 48 kB 00:00 (15/30): nspr-4.25.0-2.el8_2.x86_64.rpm 35 MB/s | 142 kB 00:00 (16/30): libXrandr-1.5.2-1.el8.x86_64.rpm 12 MB/s | 34 kB 00:00 (17/30): nss-util-3.53.1-17.el8_3.x86_64.rpm 23 MB/s | 136 kB 00:00 (18/30): nss-3.53.1-17.el8_3.x86_64.rpm 144 kB/s | 723 kB 00:05 (19/30): gtk-update-icon-cache-3.22.30-6.el8.x8 10 MB/s | 32 kB 00:00 (20/30): libXfixes-5.0.3-7.el8.x86_64.rpm 10 MB/s | 25 kB 00:00 (21/30): gdk-pixbuf2-modules-2.36.12-5.el8.x86_ 32 MB/s | 109 kB 00:00 (22/30): xorg-x11-font-utils-7.5-40.el8.x86_64. 23 MB/s | 103 kB 00:00 (23/30): libXdamage-1.1.4-14.el8.x86_64.rpm 11 MB/s | 27 kB 00:00 (24/30): giflib-5.1.4-3.el8.x86_64.rpm 16 MB/s | 51 kB 00:00 (25/30): nss-softokn-freebl-3.53.1-17.el8_3.x86 35 MB/s | 376 kB 00:00 (26/30): nss-softokn-3.53.1-17.el8_3.x86_64.rpm 52 MB/s | 484 kB 00:00 (27/30): libXinerama-1.1.4-1.el8.x86_64.rpm 6.7 MB/s | 16 kB 00:00 (28/30): libXcomposite-0.4.4-14.el8.x86_64.rpm 12 MB/s | 29 kB 00:00 (29/30): atk-2.28.1-1.el8.x86_64.rpm 38 MB/s | 272 kB 00:00 (30/30): gtk2-2.24.32-5.el8.x86_64.rpm 102 MB/s | 3.4 MB 00:00 -------------------------------------------------------------------------------- Total 932 kB/s | 9.2 MB 00:10 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : urw-base35-fonts-common-20170801-10.el8.noarch 1/187 Installing : xorg-x11-proto-devel-2020.1-3.el8.noarch 2/187 Installing : lcms2-2.9-2.el8.x86_64 3/187 Running scriptlet: lcms2-2.9-2.el8.x86_64 3/187 Installing : nspr-4.25.0-2.el8_2.x86_64 4/187 Running scriptlet: nspr-4.25.0-2.el8_2.x86_64 4/187 Installing : gdk-pixbuf2-2.36.12-5.el8.x86_64 5/187 Running scriptlet: gdk-pixbuf2-2.36.12-5.el8.x86_64 5/187 Installing : openjpeg2-2.3.1-6.el8.x86_64 6/187 Installing : libwebp-1.0.0-1.el8.x86_64 7/187 Installing : libtool-ltdl-2.4.6-25.el8.x86_64 8/187 Running scriptlet: libtool-ltdl-2.4.6-25.el8.x86_64 8/187 Installing : libglvnd-1:1.3.2-1.el8.x86_64 9/187 Installing : jasper-libs-2.0.14-4.el8.x86_64 10/187 Installing : nss-util-3.53.1-17.el8_3.x86_64 11/187 Installing : libX11-xcb-1.6.8-4.el8.x86_64 12/187 Installing : libXfixes-5.0.3-7.el8.x86_64 13/187 Installing : libraqm-0.7.0-4.el8.x86_64 14/187 Installing : libaec-1.0.2-3.el8.x86_64 15/187 Installing : hdf5-1.10.5-4.el8.x86_64 16/187 Installing : libXpm-3.5.12-8.el8.x86_64 17/187 Installing : ilmbase-2.2.0-13.el8.x86_64 18/187 Running scriptlet: ilmbase-2.2.0-13.el8.x86_64 18/187 Installing : hdf-4.2.14-5.el8.x86_64 19/187 Installing : geos-3.7.2-1.el8.x86_64 20/187 Installing : freexl-1.0.6-1.el8.x86_64 21/187 Installing : fftw-libs-double-3.3.5-11.el8.x86_64 22/187 Installing : libcroco-0.6.12-4.el8_2.1.x86_64 23/187 Running scriptlet: libcroco-0.6.12-4.el8_2.1.x86_64 23/187 Installing : librsvg2-2.42.7-4.el8.x86_64 24/187 Installing : netcdf-4.7.0-2.el8.x86_64 25/187 Installing : OpenEXR-libs-2.2.0-12.el8.x86_64 26/187 Running scriptlet: OpenEXR-libs-2.2.0-12.el8.x86_64 26/187 Installing : libXcursor-1.1.15-3.el8.x86_64 27/187 Installing : libXdamage-1.1.4-14.el8.x86_64 28/187 Installing : unixODBC-2.3.7-1.el8.x86_64 29/187 Running scriptlet: unixODBC-2.3.7-1.el8.x86_64 29/187 Installing : libICE-devel-1.0.9-15.el8.x86_64 30/187 Installing : xerces-c-3.2.2-3.el8.x86_64 31/187 Installing : protobuf-3.5.0-13.el8.x86_64 32/187 Installing : ogdi-4.1.0-1.el8.x86_64 33/187 Installing : mesa-libglapi-20.3.3-2.el8.x86_64 34/187 Running scriptlet: mesa-libglapi-20.3.3-2.el8.x86_64 34/187 Installing : libxshmfence-1.3-2.el8.x86_64 35/187 Installing : libwayland-server-1.17.0-1.el8.x86_64 36/187 Installing : libpq-13.2-1.el8.x86_64 37/187 Installing : libjpeg-turbo-devel-1.5.3-10.el8.x86_64 38/187 Installing : libgta-1.2.1-1.el8.x86_64 39/187 Installing : libdap-3.19.1-2.el8.x86_64 40/187 Running scriptlet: libdap-3.19.1-2.el8.x86_64 40/187 Installing : libXxf86vm-1.1.4-9.el8.x86_64 41/187 Installing : cfitsio-3.47-1.el8.x86_64 42/187 Installing : adobe-mappings-cmap-20171205-3.el8.noarch 43/187 Installing : atk-2.28.1-1.el8.x86_64 44/187 Installing : libXinerama-1.1.4-1.el8.x86_64 45/187 Installing : giflib-5.1.4-3.el8.x86_64 46/187 Installing : libXrandr-1.5.2-1.el8.x86_64 47/187 Installing : libXi-1.7.10-1.el8.x86_64 48/187 Installing : libpng-devel-2:1.6.34-5.el8.x86_64 49/187 Installing : freetype-devel-2.9.1-4.el8_3.1.x86_64 50/187 Installing : adobe-mappings-cmap-deprecated-20171205-3.el8.no 51/187 Installing : jasper-devel-2.0.14-4.el8.x86_64 52/187 Installing : protobuf-compiler-3.5.0-13.el8.x86_64 53/187 Installing : libSM-devel-1.2.3-1.el8.x86_64 54/187 Installing : gettext-libs-0.19.8.1-17.el8.x86_64 55/187 Installing : gettext-0.19.8.1-17.el8.x86_64 56/187 Running scriptlet: gettext-0.19.8.1-17.el8.x86_64 56/187 Installing : gd-2.2.5-7.el8.x86_64 57/187 Running scriptlet: gd-2.2.5-7.el8.x86_64 57/187 Installing : libXaw-1.0.13-10.el8.x86_64 58/187 Installing : nss-softokn-freebl-3.53.1-17.el8_3.x86_64 59/187 Installing : nss-softokn-3.53.1-17.el8_3.x86_64 60/187 Installing : nss-sysinit-3.53.1-17.el8_3.x86_64 61/187 Installing : nss-3.53.1-17.el8_3.x86_64 62/187 Installing : gdk-pixbuf2-modules-2.36.12-5.el8.x86_64 63/187 Installing : LibRaw-0.19.5-2.el8.x86_64 64/187 Installing : 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mesa-libgbm-20.3.3-2.el8.x86_64 108/187 Running scriptlet: mesa-libgbm-20.3.3-2.el8.x86_64 108/187 Installing : libglvnd-egl-1:1.3.2-1.el8.x86_64 109/187 Installing : mesa-libEGL-20.3.3-2.el8.x86_64 110/187 Installing : libglvnd-gles-1:1.3.2-1.el8.x86_64 111/187 Installing : libglvnd-glx-1:1.3.2-1.el8.x86_64 112/187 Installing : mesa-libGL-20.3.3-2.el8.x86_64 113/187 Installing : glx-utils-8.4.0-5.20181118git1830dcb.el8.x86_64 114/187 Installing : mesa-libGLU-9.0.0-15.el8.x86_64 115/187 Installing : libpaper-1.1.24-22.el8.x86_64 116/187 Installing : libmcpp-2.7.2-20.el8.x86_64 117/187 Running scriptlet: libmcpp-2.7.2-20.el8.x86_64 117/187 Installing : mcpp-2.7.2-20.el8.x86_64 118/187 Installing : libijs-0.35-5.el8.x86_64 119/187 Installing : libidn-1.34-5.el8.x86_64 120/187 Running scriptlet: libidn-1.34-5.el8.x86_64 120/187 Installing : libgudev-232-4.el8.x86_64 121/187 Installing : libwacom-1.6-2.el8.x86_64 122/187 Installing : libglvnd-core-devel-1:1.3.2-1.el8.x86_64 123/187 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mesa-libGL-20.3.3-2.el8.x86_64 135/187 Verifying : mesa-libGLU-9.0.0-15.el8.x86_64 136/187 Verifying : mesa-libGLU-devel-9.0.0-15.el8.x86_64 137/187 Verifying : mesa-libgbm-20.3.3-2.el8.x86_64 138/187 Verifying : mesa-libglapi-20.3.3-2.el8.x86_64 139/187 Verifying : minizip-2.8.9-2.el8.x86_64 140/187 Verifying : mtdev-1.1.5-12.el8.x86_64 141/187 Verifying : netcdf-4.7.0-2.el8.x86_64 142/187 Verifying : ogdi-4.1.0-1.el8.x86_64 143/187 Verifying : openblas-0.3.12-1.el8.x86_64 144/187 Verifying : openblas-openmp-0.3.12-1.el8.x86_64 145/187 Verifying : openblas-threads64_-0.3.12-1.el8.x86_64 146/187 Verifying : openjpeg2-2.3.1-6.el8.x86_64 147/187 Verifying : pixman-devel-0.38.4-1.el8.x86_64 148/187 Verifying : platform-python-pip-9.0.3-19.el8.noarch 149/187 Verifying : poppler-0.66.0-27.el8.x86_64 150/187 Verifying : poppler-data-0.4.9-1.el8.noarch 151/187 Verifying : proj-6.3.2-4.el8.x86_64 152/187 Verifying : proj-datumgrid-1.8-6.3.2.4.el8.noarch 153/187 Verifying : protobuf-3.5.0-13.el8.x86_64 154/187 Verifying : protobuf-compiler-3.5.0-13.el8.x86_64 155/187 Verifying : protobuf-devel-3.5.0-13.el8.x86_64 156/187 Verifying : python3-pip-9.0.3-19.el8.noarch 157/187 Verifying : python3-setuptools-39.2.0-6.el8.noarch 158/187 Verifying : python36-3.6.8-2.module+el8.1.0+3334+5cb623d7.x8 159/187 Verifying : qt5-qtbase-5.12.5-8.el8.x86_64 160/187 Verifying : qt5-qtbase-common-5.12.5-8.el8.noarch 161/187 Verifying : qt5-qtbase-gui-5.12.5-8.el8.x86_64 162/187 Verifying : shapelib-1.5.0-1.el8.x86_64 163/187 Verifying : udunits2-2.2.26-5.el8.x86_64 164/187 Verifying : unixODBC-2.3.7-1.el8.x86_64 165/187 Verifying : uriparser-0.9.3-2.el8.x86_64 166/187 Verifying : urw-base35-bookman-fonts-20170801-10.el8.noarch 167/187 Verifying : urw-base35-c059-fonts-20170801-10.el8.noarch 168/187 Verifying : urw-base35-d050000l-fonts-20170801-10.el8.noarch 169/187 Verifying : urw-base35-fonts-20170801-10.el8.noarch 170/187 Verifying : urw-base35-fonts-common-20170801-10.el8.noarch 171/187 Verifying : urw-base35-gothic-fonts-20170801-10.el8.noarch 172/187 Verifying : urw-base35-nimbus-mono-ps-fonts-20170801-10.el8. 173/187 Verifying : urw-base35-nimbus-roman-fonts-20170801-10.el8.no 174/187 Verifying : urw-base35-nimbus-sans-fonts-20170801-10.el8.noa 175/187 Verifying : urw-base35-p052-fonts-20170801-10.el8.noarch 176/187 Verifying : urw-base35-standard-symbols-ps-fonts-20170801-10 177/187 Verifying : urw-base35-z003-fonts-20170801-10.el8.noarch 178/187 Verifying : xcb-util-0.4.0-10.el8.x86_64 179/187 Verifying : xcb-util-image-0.4.0-9.el8.x86_64 180/187 Verifying : xcb-util-keysyms-0.4.0-7.el8.x86_64 181/187 Verifying : xcb-util-renderutil-0.3.9-10.el8.x86_64 182/187 Verifying : xcb-util-wm-0.4.1-12.el8.x86_64 183/187 Verifying : xerces-c-3.2.2-3.el8.x86_64 184/187 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-19.el8.noarc 185/187 Verifying : xorg-x11-proto-devel-2020.1-3.el8.noarch 186/187 Verifying : xorg-x11-server-utils-7.7-27.el8.x86_64 187/187 Installed products updated. Installed: ImageMagick-6.9.10.86-1.el8.x86_64 ImageMagick-c++-6.9.10.86-1.el8.x86_64 ImageMagick-devel-6.9.10.86-1.el8.x86_64 ImageMagick-libs-6.9.10.86-1.el8.x86_64 LibRaw-0.19.5-2.el8.x86_64 OpenEXR-devel-2.2.0-12.el8.x86_64 OpenEXR-libs-2.2.0-12.el8.x86_64 SuperLU-5.2.0-7.el8.x86_64 adobe-mappings-cmap-20171205-3.el8.noarch adobe-mappings-cmap-deprecated-20171205-3.el8.noarch adobe-mappings-pdf-20180407-1.el8.noarch armadillo-9.700.2-1.el8.x86_64 arpack-3.7.0-1.el8.x86_64 atk-2.28.1-1.el8.x86_64 atlas-3.10.3-8.el8.x86_64 avahi-libs-0.7-20.el8.x86_64 blas-3.8.0-8.el8.x86_64 cairo-devel-1.15.12-3.el8.x86_64 cfitsio-3.47-1.el8.x86_64 cups-libs-1:2.2.6-38.el8.x86_64 expat-devel-2.2.5-4.el8.x86_64 fftw-libs-double-3.3.5-11.el8.x86_64 fontconfig-devel-2.13.1-3.el8.x86_64 freetype-devel-2.9.1-4.el8_3.1.x86_64 freexl-1.0.6-1.el8.x86_64 gd-2.2.5-7.el8.x86_64 gdal-3.0.4-7.el8.x86_64 gdal-libs-3.0.4-7.el8.x86_64 gdk-pixbuf2-2.36.12-5.el8.x86_64 gdk-pixbuf2-modules-2.36.12-5.el8.x86_64 geos-3.7.2-1.el8.x86_64 gettext-0.19.8.1-17.el8.x86_64 gettext-libs-0.19.8.1-17.el8.x86_64 giflib-5.1.4-3.el8.x86_64 gl-manpages-1.1-15.20161227.el8.noarch glx-utils-8.4.0-5.20181118git1830dcb.el8.x86_64 google-droid-sans-fonts-20120715-13.el8.noarch gpsbabel-1.6.0-3.el8.x86_64 graphite2-devel-1.3.10-10.el8.x86_64 graphviz-2.40.1-40.el8.x86_64 gtk-update-icon-cache-3.22.30-6.el8.x86_64 gtk2-2.24.32-5.el8.x86_64 harfbuzz-devel-1.7.5-3.el8.x86_64 harfbuzz-icu-1.7.5-3.el8.x86_64 hdf-4.2.14-5.el8.x86_64 hdf5-1.10.5-4.el8.x86_64 hicolor-icon-theme-0.17-2.el8.noarch http-parser-2.8.0-9.el8.x86_64 ilmbase-2.2.0-13.el8.x86_64 ilmbase-devel-2.2.0-13.el8.x86_64 jasper-devel-2.0.14-4.el8.x86_64 jasper-libs-2.0.14-4.el8.x86_64 jbig2dec-libs-0.16-1.el8.x86_64 lapack-3.8.0-8.el8.x86_64 lcms2-2.9-2.el8.x86_64 lcms2-devel-2.9-2.el8.x86_64 libICE-devel-1.0.9-15.el8.x86_64 libSM-devel-1.2.3-1.el8.x86_64 libX11-devel-1.6.8-4.el8.x86_64 libX11-xcb-1.6.8-4.el8.x86_64 libXau-devel-1.0.9-3.el8.x86_64 libXaw-1.0.13-10.el8.x86_64 libXcomposite-0.4.4-14.el8.x86_64 libXcursor-1.1.15-3.el8.x86_64 libXdamage-1.1.4-14.el8.x86_64 libXext-devel-1.3.4-1.el8.x86_64 libXfixes-5.0.3-7.el8.x86_64 libXi-1.7.10-1.el8.x86_64 libXinerama-1.1.4-1.el8.x86_64 libXpm-3.5.12-8.el8.x86_64 libXrandr-1.5.2-1.el8.x86_64 libXrender-devel-0.9.10-7.el8.x86_64 libXt-devel-1.1.5-12.el8.x86_64 libXxf86misc-1.0.4-1.el8.x86_64 libXxf86vm-1.1.4-9.el8.x86_64 libaec-1.0.2-3.el8.x86_64 libbsd-0.9.1-4.el8.x86_64 libcroco-0.6.12-4.el8_2.1.x86_64 libdap-3.19.1-2.el8.x86_64 libdrm-2.4.103-1.el8.x86_64 libevdev-1.8.0-1.el8.x86_64 libfontenc-1.1.3-8.el8.x86_64 libgeotiff-1.5.1-1.el8.x86_64 libgit2-0.26.8-2.el8.x86_64 libgit2-devel-0.26.8-2.el8.x86_64 libglvnd-1:1.3.2-1.el8.x86_64 libglvnd-core-devel-1:1.3.2-1.el8.x86_64 libglvnd-devel-1:1.3.2-1.el8.x86_64 libglvnd-egl-1:1.3.2-1.el8.x86_64 libglvnd-gles-1:1.3.2-1.el8.x86_64 libglvnd-glx-1:1.3.2-1.el8.x86_64 libglvnd-opengl-1:1.3.2-1.el8.x86_64 libgs-9.27-1.el8.x86_64 libgs-devel-9.27-1.el8.x86_64 libgta-1.2.1-1.el8.x86_64 libgudev-232-4.el8.x86_64 libidn-1.34-5.el8.x86_64 libijs-0.35-5.el8.x86_64 libinput-1.16.3-1.el8.x86_64 libjpeg-turbo-devel-1.5.3-10.el8.x86_64 libkml-1.3.0-24.el8.x86_64 libmcpp-2.7.2-20.el8.x86_64 libpaper-1.1.24-22.el8.x86_64 libpciaccess-0.14-1.el8.x86_64 libpng-devel-2:1.6.34-5.el8.x86_64 libpq-13.2-1.el8.x86_64 libraqm-0.7.0-4.el8.x86_64 librsvg2-2.42.7-4.el8.x86_64 libspatialite-5.0.0-1.el8.x86_64 libtiff-devel-4.0.9-18.el8.x86_64 libtool-ltdl-2.4.6-25.el8.x86_64 libusb-1:0.1.5-12.el8.x86_64 libuuid-devel-2.32.1-27.el8.x86_64 libwacom-1.6-2.el8.x86_64 libwacom-data-1.6-2.el8.noarch libwayland-client-1.17.0-1.el8.x86_64 libwayland-server-1.17.0-1.el8.x86_64 libwebp-1.0.0-1.el8.x86_64 libwebp-devel-1.0.0-1.el8.x86_64 libwmf-lite-0.2.9-8.el8_0.x86_64 libxcb-devel-1.13.1-1.el8.x86_64 libxkbcommon-x11-0.9.1-1.el8.x86_64 libxshmfence-1.3-2.el8.x86_64 mariadb-connector-c-3.1.11-2.el8_3.x86_64 mariadb-connector-c-config-3.1.11-2.el8_3.noarch mcpp-2.7.2-20.el8.x86_64 mesa-libEGL-20.3.3-2.el8.x86_64 mesa-libGL-20.3.3-2.el8.x86_64 mesa-libGLU-9.0.0-15.el8.x86_64 mesa-libGLU-devel-9.0.0-15.el8.x86_64 mesa-libgbm-20.3.3-2.el8.x86_64 mesa-libglapi-20.3.3-2.el8.x86_64 minizip-2.8.9-2.el8.x86_64 mtdev-1.1.5-12.el8.x86_64 netcdf-4.7.0-2.el8.x86_64 nspr-4.25.0-2.el8_2.x86_64 nss-3.53.1-17.el8_3.x86_64 nss-softokn-3.53.1-17.el8_3.x86_64 nss-softokn-freebl-3.53.1-17.el8_3.x86_64 nss-sysinit-3.53.1-17.el8_3.x86_64 nss-util-3.53.1-17.el8_3.x86_64 ogdi-4.1.0-1.el8.x86_64 openblas-0.3.12-1.el8.x86_64 openblas-openmp-0.3.12-1.el8.x86_64 openblas-threads64_-0.3.12-1.el8.x86_64 openjpeg2-2.3.1-6.el8.x86_64 pixman-devel-0.38.4-1.el8.x86_64 platform-python-pip-9.0.3-19.el8.noarch poppler-0.66.0-27.el8.x86_64 poppler-data-0.4.9-1.el8.noarch proj-6.3.2-4.el8.x86_64 proj-datumgrid-1.8-6.3.2.4.el8.noarch protobuf-3.5.0-13.el8.x86_64 protobuf-compiler-3.5.0-13.el8.x86_64 protobuf-devel-3.5.0-13.el8.x86_64 python3-pip-9.0.3-19.el8.noarch python3-setuptools-39.2.0-6.el8.noarch python36-3.6.8-2.module+el8.1.0+3334+5cb623d7.x86_64 qt5-qtbase-5.12.5-8.el8.x86_64 qt5-qtbase-common-5.12.5-8.el8.noarch qt5-qtbase-gui-5.12.5-8.el8.x86_64 shapelib-1.5.0-1.el8.x86_64 udunits2-2.2.26-5.el8.x86_64 unixODBC-2.3.7-1.el8.x86_64 uriparser-0.9.3-2.el8.x86_64 urw-base35-bookman-fonts-20170801-10.el8.noarch urw-base35-c059-fonts-20170801-10.el8.noarch urw-base35-d050000l-fonts-20170801-10.el8.noarch urw-base35-fonts-20170801-10.el8.noarch urw-base35-fonts-common-20170801-10.el8.noarch urw-base35-gothic-fonts-20170801-10.el8.noarch urw-base35-nimbus-mono-ps-fonts-20170801-10.el8.noarch urw-base35-nimbus-roman-fonts-20170801-10.el8.noarch urw-base35-nimbus-sans-fonts-20170801-10.el8.noarch urw-base35-p052-fonts-20170801-10.el8.noarch urw-base35-standard-symbols-ps-fonts-20170801-10.el8.noarch urw-base35-z003-fonts-20170801-10.el8.noarch xcb-util-0.4.0-10.el8.x86_64 xcb-util-image-0.4.0-9.el8.x86_64 xcb-util-keysyms-0.4.0-7.el8.x86_64 xcb-util-renderutil-0.3.9-10.el8.x86_64 xcb-util-wm-0.4.1-12.el8.x86_64 xerces-c-3.2.2-3.el8.x86_64 xorg-x11-font-utils-1:7.5-40.el8.x86_64 xorg-x11-fonts-ISO8859-1-100dpi-7.5-19.el8.noarch xorg-x11-proto-devel-2020.1-3.el8.noarch xorg-x11-server-utils-7.7-27.el8.x86_64 Complete! STEP 15: RUN yum localinstall -y gdal-libs-3.0.4-8.el8.x86_64.rpm gdal-3.0.4-8.el8.x86_64.rpm ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64.rpm udunits2-devel-2.2.26-5.el8.x86_64.rpm Last metadata expiration check: 0:01:37 ago on Tue Sep 7 20:47:22 2021. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: ImageMagick-c++-devel x86_64 6.9.10.86-1.el8 @commandline 122 k udunits2-devel x86_64 2.2.26-5.el8 @commandline 22 k Upgrading: gdal x86_64 3.0.4-8.el8 @commandline 269 k gdal-libs x86_64 3.0.4-8.el8 @commandline 7.5 M poppler x86_64 20.11.0-2.el8 ubi-8-appstream 1.1 M Transaction Summary ================================================================================ Install 2 Packages Upgrade 3 Packages Total size: 8.9 M Total download size: 1.1 M Downloading Packages: [MIRROR] poppler-20.11.0-2.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/p/poppler-20.11.0-2.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] poppler-20.11.0-2.el8.x86_64.rpm 216 kB/s | 1.1 MB 00:05 -------------------------------------------------------------------------------- Total 216 kB/s | 1.1 MB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : poppler-20.11.0-2.el8.x86_64 1/8 Running scriptlet: poppler-20.11.0-2.el8.x86_64 1/8 Upgrading : gdal-libs-3.0.4-8.el8.x86_64 2/8 Upgrading : gdal-3.0.4-8.el8.x86_64 3/8 Installing : udunits2-devel-2.2.26-5.el8.x86_64 4/8 Installing : ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64 5/8 Cleanup : gdal-3.0.4-7.el8.x86_64 6/8 Cleanup : gdal-libs-3.0.4-7.el8.x86_64 7/8 Cleanup : poppler-0.66.0-27.el8.x86_64 8/8 Running scriptlet: poppler-0.66.0-27.el8.x86_64 8/8 Verifying : ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64 1/8 Verifying : udunits2-devel-2.2.26-5.el8.x86_64 2/8 Verifying : poppler-20.11.0-2.el8.x86_64 3/8 Verifying : poppler-0.66.0-27.el8.x86_64 4/8 Verifying : gdal-libs-3.0.4-8.el8.x86_64 5/8 Verifying : gdal-libs-3.0.4-7.el8.x86_64 6/8 Verifying : gdal-3.0.4-8.el8.x86_64 7/8 Verifying : gdal-3.0.4-7.el8.x86_64 8/8 Installed products updated. Upgraded: gdal-3.0.4-8.el8.x86_64 gdal-libs-3.0.4-8.el8.x86_64 poppler-20.11.0-2.el8.x86_64 Installed: ImageMagick-c++-devel-6.9.10.86-1.el8.x86_64 udunits2-devel-2.2.26-5.el8.x86_64 Complete! STEP 16: RUN yum install -y fontconfig-devel libpng libpng-devel libxslt-devel java-1.8.0-openjdk java-1.8.0-openjdk-devel && yum clean packages Last metadata expiration check: 0:01:45 ago on Tue Sep 7 20:47:22 2021. Package fontconfig-devel-2.13.1-3.el8.x86_64 is already installed. Package libpng-2:1.6.34-5.el8.x86_64 is already installed. Package libpng-devel-2:1.6.34-5.el8.x86_64 is already installed. Dependencies resolved. ============================================================================================== Package Arch Version Repository Size ============================================================================================== Installing: java-1.8.0-openjdk x86_64 1:1.8.0.302.b08-0.el8_4 ubi-8-appstream 336 k java-1.8.0-openjdk-devel x86_64 1:1.8.0.302.b08-0.el8_4 ubi-8-appstream 9.8 M libxslt-devel x86_64 1.1.32-6.el8 ubi-8-appstream 323 k Installing dependencies: alsa-lib x86_64 1.2.4-5.el8 ubi-8-appstream 471 k copy-jdk-configs noarch 3.7-4.el8 ubi-8-appstream 27 k java-1.8.0-openjdk-headless x86_64 1:1.8.0.302.b08-0.el8_4 ubi-8-appstream 34 M javapackages-filesystem noarch 5.3.0-1.module+el8+2447+6f56d9a6 ubi-8-appstream 30 k libXtst x86_64 1.2.3-7.el8 ubi-8-appstream 22 k libgcrypt-devel x86_64 1.8.5-4.el8 ubi-8-baseos 149 k libgpg-error-devel x86_64 1.31-1.el8 ubi-8-baseos 64 k libxslt x86_64 1.1.32-6.el8 ubi-8-baseos 250 k lksctp-tools x86_64 1.0.18-3.el8 ubi-8-baseos 100 k lua x86_64 5.3.4-11.el8 ubi-8-appstream 193 k ttmkfdir x86_64 3.0.9-54.el8 ubi-8-appstream 62 k tzdata-java noarch 2021a-1.el8 ubi-8-appstream 192 k xorg-x11-fonts-Type1 noarch 7.5-19.el8 ubi-8-appstream 522 k Enabling module streams: javapackages-runtime 201801 Transaction Summary ============================================================================================== Install 16 Packages Total download size: 46 M Installed size: 166 M Downloading Packages: [MIRROR] lksctp-tools-1.0.18-3.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/l/lksctp-tools-1.0.18-3.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] libgpg-error-devel-1.31-1.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/l/libgpg-error-devel-1.31-1.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] libgcrypt-devel-1.8.5-4.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/baseos/os/Packages/l/libgcrypt-devel-1.8.5-4.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] (1/16): libgpg-error-devel-1.31-1.el8.x86_64.rp 13 kB/s | 64 kB 00:05 (2/16): lksctp-tools-1.0.18-3.el8.x86_64.rpm 20 kB/s | 100 kB 00:05 (3/16): libgcrypt-devel-1.8.5-4.el8.x86_64.rpm 30 kB/s | 149 kB 00:05 (4/16): libxslt-1.1.32-6.el8.x86_64.rpm 14 MB/s | 250 kB 00:00 [MIRROR] ttmkfdir-3.0.9-54.el8.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/t/ttmkfdir-3.0.9-54.el8.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] javapackages-filesystem-5.3.0-1.module+el8+2447+6f56d9a6.noarch.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/j/javapackages-filesystem-5.3.0-1.module%2bel8%2b2447%2b6f56d9a6.noarch.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] [MIRROR] libxslt-devel-1.1.32-6.el8.x86_64.rpm: Curl error (35): SSL connect error for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/l/libxslt-devel-1.1.32-6.el8.x86_64.rpm [OpenSSL SSL_connect: SSL_ERROR_SYSCALL in connection to cdn-ubi.redhat.com:443 ] (5/16): javapackages-filesystem-5.3.0-1.module+ 6.1 kB/s | 30 kB 00:04 (6/16): ttmkfdir-3.0.9-54.el8.x86_64.rpm 12 kB/s | 62 kB 00:05 (7/16): copy-jdk-configs-3.7-4.el8.noarch.rpm 10 MB/s | 27 kB 00:00 (8/16): libXtst-1.2.3-7.el8.x86_64.rpm 8.6 MB/s | 22 kB 00:00 (9/16): libxslt-devel-1.1.32-6.el8.x86_64.rpm 65 kB/s | 323 kB 00:04 (10/16): tzdata-java-2021a-1.el8.noarch.rpm 25 MB/s | 192 kB 00:00 (11/16): lua-5.3.4-11.el8.x86_64.rpm 30 MB/s | 193 kB 00:00 (12/16): xorg-x11-fonts-Type1-7.5-19.el8.noarch 35 MB/s | 522 kB 00:00 (13/16): alsa-lib-1.2.4-5.el8.x86_64.rpm 45 MB/s | 471 kB 00:00 (14/16): java-1.8.0-openjdk-1.8.0.302.b08-0.el8 47 MB/s | 336 kB 00:00 (15/16): java-1.8.0-openjdk-devel-1.8.0.302.b08 104 MB/s | 9.8 MB 00:00 (16/16): java-1.8.0-openjdk-headless-1.8.0.302. 202 MB/s | 34 MB 00:00 -------------------------------------------------------------------------------- Total 4.5 MB/s | 46 MB 00:10 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-3.7-4.el8.noarch 1/1 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.302.b08-0.el8_4. 1/1 Preparing : 1/1 Installing : libgpg-error-devel-1.31-1.el8.x86_64 1/16 Running scriptlet: libgpg-error-devel-1.31-1.el8.x86_64 1/16 Installing : libgcrypt-devel-1.8.5-4.el8.x86_64 2/16 Running scriptlet: libgcrypt-devel-1.8.5-4.el8.x86_64 2/16 Installing : alsa-lib-1.2.4-5.el8.x86_64 3/16 Running scriptlet: alsa-lib-1.2.4-5.el8.x86_64 3/16 Installing : lua-5.3.4-11.el8.x86_64 4/16 Installing : copy-jdk-configs-3.7-4.el8.noarch 5/16 Installing : libXtst-1.2.3-7.el8.x86_64 6/16 Installing : tzdata-java-2021a-1.el8.noarch 7/16 Installing : javapackages-filesystem-5.3.0-1.module+el8+2447+6f 8/16 Installing : ttmkfdir-3.0.9-54.el8.x86_64 9/16 Installing : xorg-x11-fonts-Type1-7.5-19.el8.noarch 10/16 Running scriptlet: xorg-x11-fonts-Type1-7.5-19.el8.noarch 10/16 Installing : libxslt-1.1.32-6.el8.x86_64 11/16 Installing : lksctp-tools-1.0.18-3.el8.x86_64 12/16 Running scriptlet: lksctp-tools-1.0.18-3.el8.x86_64 12/16 Installing : java-1.8.0-openjdk-headless-1:1.8.0.302.b08-0.el8_ 13/16 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.302.b08-0.el8_ 13/16 Installing : java-1.8.0-openjdk-1:1.8.0.302.b08-0.el8_4.x86_64 14/16 Running scriptlet: java-1.8.0-openjdk-1:1.8.0.302.b08-0.el8_4.x86_64 14/16 Installing : java-1.8.0-openjdk-devel-1:1.8.0.302.b08-0.el8_4.x 15/16 Running scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.302.b08-0.el8_4.x 15/16 Installing : libxslt-devel-1.1.32-6.el8.x86_64 16/16 Running scriptlet: copy-jdk-configs-3.7-4.el8.noarch 16/16 Running scriptlet: java-1.8.0-openjdk-1:1.8.0.302.b08-0.el8_4.x86_64 16/16 Running scriptlet: java-1.8.0-openjdk-devel-1:1.8.0.302.b08-0.el8_4.x 16/16 Running scriptlet: libxslt-devel-1.1.32-6.el8.x86_64 16/16 Verifying : lksctp-tools-1.0.18-3.el8.x86_64 1/16 Verifying : libgpg-error-devel-1.31-1.el8.x86_64 2/16 Verifying : libgcrypt-devel-1.8.5-4.el8.x86_64 3/16 Verifying : libxslt-1.1.32-6.el8.x86_64 4/16 Verifying : ttmkfdir-3.0.9-54.el8.x86_64 5/16 Verifying : javapackages-filesystem-5.3.0-1.module+el8+2447+6f 6/16 Verifying : libxslt-devel-1.1.32-6.el8.x86_64 7/16 Verifying : copy-jdk-configs-3.7-4.el8.noarch 8/16 Verifying : tzdata-java-2021a-1.el8.noarch 9/16 Verifying : libXtst-1.2.3-7.el8.x86_64 10/16 Verifying : xorg-x11-fonts-Type1-7.5-19.el8.noarch 11/16 Verifying : lua-5.3.4-11.el8.x86_64 12/16 Verifying : java-1.8.0-openjdk-devel-1:1.8.0.302.b08-0.el8_4.x 13/16 Verifying : java-1.8.0-openjdk-headless-1:1.8.0.302.b08-0.el8_ 14/16 Verifying : alsa-lib-1.2.4-5.el8.x86_64 15/16 Verifying : java-1.8.0-openjdk-1:1.8.0.302.b08-0.el8_4.x86_64 16/16 Installed products updated. Installed: alsa-lib-1.2.4-5.el8.x86_64 copy-jdk-configs-3.7-4.el8.noarch java-1.8.0-openjdk-1:1.8.0.302.b08-0.el8_4.x86_64 java-1.8.0-openjdk-devel-1:1.8.0.302.b08-0.el8_4.x86_64 java-1.8.0-openjdk-headless-1:1.8.0.302.b08-0.el8_4.x86_64 javapackages-filesystem-5.3.0-1.module+el8+2447+6f56d9a6.noarch libXtst-1.2.3-7.el8.x86_64 libgcrypt-devel-1.8.5-4.el8.x86_64 libgpg-error-devel-1.31-1.el8.x86_64 libxslt-1.1.32-6.el8.x86_64 libxslt-devel-1.1.32-6.el8.x86_64 lksctp-tools-1.0.18-3.el8.x86_64 lua-5.3.4-11.el8.x86_64 ttmkfdir-3.0.9-54.el8.x86_64 tzdata-java-2021a-1.el8.noarch xorg-x11-fonts-Type1-7.5-19.el8.noarch Complete! 0 files removed STEP 17: RUN R -e "tools::write_PACKAGES('/tmp/repo/')" R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > tools::write_PACKAGES('/tmp/repo/') /usr/bin/gtar: R/DESCRIPTION: Not found in archive /usr/bin/gtar: Exiting with failure status due to previous errors reading DESCRIPTION for package 'R' failed with message: cannot open the connection /usr/bin/gtar: libgit2-1.1.0.x86/DESCRIPTION: Not found in archive /usr/bin/gtar: Exiting with failure status due to previous errors reading DESCRIPTION for package 'libgit2-1.1.0.x86' failed with message: cannot open the connection > > STEP 18: RUN tar xvzf /tmp/repo/pandoc-2.13-linux-amd64.tar.gz --strip-components 1 -C /usr/local pandoc-2.13/share/ pandoc-2.13/share/man/ pandoc-2.13/share/man/man1/ pandoc-2.13/share/man/man1/pandoc.1.gz pandoc-2.13/bin/ pandoc-2.13/bin/pandoc STEP 19: RUN R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.8.0_302 Java home path : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c conftest.c -o conftest.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/lib/amd64/server -ljvm -L/opt/R/4.0.3/lib/R/lib -lR JAVA_HOME : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre Java library path: $(JAVA_HOME)/lib/amd64/server JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm Updating Java configuration in /opt/R/4.0.3/lib/R Done. STEP 20: USER 1001 STEP 21: COPY ./scripts/ai-ml-packages.R ./ STEP 22: RUN Rscript --no-save ai-ml-packages.R broom C50 cli devtools DT ECharts2Shiny feather flexdashboard flextable forcats also installing the dependencies 'SQUAREM', 'bitops', 'clipr', 'BH', 'rematch', 'prettyunits', 'lava', 'sys', 'caTools', 'forcats', 'hms', 'readr', 'cellranger', 'progress', 'zip', 'prodlim', 'askpass', 'colorspace', 'listenv', 'parallelly', 'utf8', 'gmp', 'polynom', 'sets', 'mathjaxr', 'rbibutils', 'gplots', 'haven', 'curl', 'readxl', 'openxlsx', 'iterators', 'gower', 'ipred', 'timeDate', 'lazyeval', 'mime', 'openssl', 'farver', 'labeling', 'munsell', 'RColorBrewer', 'viridisLite', 'png', 'jpeg', 'checkmate', 'htmlwidgets', 'rstudioapi', 'rngWELL', 'misc3d', 'tmvnsim', 'miscTools', 'matrixStats', 'pcaPP', 'future', 'globals', 'warp', 'raster', 'classInt', 'units', 'gdata', 'rprojroot', 'diffobj', 'rematch2', 'xts', 'TTR', 'lifecycle', 'magrittr', 'R6', 'tidyselect', 'vctrs', 'pillar', 'stringi', 'fansi', 'pkgconfig', 'cpp11', 'Formula', 'numDeriv', 'bdsmatrix', 'mvtnorm', 'flexmix', 'modeltools', 'DBI', 'partitions', 'Rdpack', 'xergm.common', 'sna', 'ROCR', 'igraph', 'RSiena', 'statnet.common', 'carData', 'abind', 'pbkrtest', 'rio', 'foreach', 'plyr', 'ModelMetrics', 'reshape2', 'recipes', 'withr', 'pROC', 'digest', 'jsonlite', 'rex', 'httr', 'crayon', 'yaml', 'gtools', 'plotrix', 'scales', 'proxy', 'estimability', 'xtable', 'BiasedUrn', 'pander', 'lubridate', 'trust', 'lpSolve', 'rle', 'Rcpp', 'dreamerr', 'gtable', 'isoband', 'shape', 'latticeExtra', 'gridExtra', 'data.table', 'htmlTable', 'viridis', 'htmltools', 'base64enc', 'cobs', 'doParallel', 'randtoolbox', 'RcppArmadillo', 'evaluate', 'highr', 'markdown', 'xfun', 'FNN', 'kernlab', 'multicool', 'plot3D', 'mnormt', 'pbivnorm', 'minqa', 'nloptr', 'statmod', 'RcppEigen', 'prediction', 'dfidx', 'TH.data', 'ucminf', 'maxLik', 'scatterplot3d', 'SparseM', 'MatrixModels', 'conquer', 'msm', 'tinytex', 'fit.models', 'rrcov', 'DEoptimR', 'furrr', 'slider', 'spData', 'sf', 'deldir', 'LearnBayes', 'expm', 'gmodels', 'commonmark', 'xml2', 'hunspell', 'mitools', 'brio', 'callr', 'cli', 'desc', 'pkgload', 'praise', 'processx', 'ps', 'waldo', 'quadprog', 'quantmod', 'strucchange', 'urca', 'backports', 'dplyr', 'ellipsis', 'generics', 'glue', 'purrr', 'rlang', 'stringr', 'tibble', 'tidyr', 'AER', 'akima', 'AUC', 'bbmle', 'betareg', 'biglm', 'binGroup', 'btergm', 'car', 'caret', 'cmprsk', 'coda', 'covr', 'drc', 'e1071', 'emmeans', 'epiR', 'ergm', 'fixest', 'gam', 'gee', 'geepack', 'ggplot2', 'glmnet', 'glmnetUtils', 'gmm', 'Hmisc', 'irlba', 'joineRML', 'Kendall', 'knitr', 'ks', 'Lahman', 'lavaan', 'leaps', 'lfe', 'lm.beta', 'lme4', 'lmodel2', 'lmtest', 'lsmeans', 'maps', 'maptools', 'margins', 'mclust', 'mediation', 'metafor', 'mfx', 'mlogit', 'modeldata', 'modeltests', 'muhaz', 'multcomp', 'network', 'orcutt', 'ordinal', 'plm', 'poLCA', 'psych', 'quantreg', 'Rchoice', 'rgeos', 'rmarkdown', 'robust', 'robustbase', 'rsample', 'sandwich', 'sp', 'spdep', 'spatialreg', 'speedglm', 'spelling', 'survey', 'systemfit', 'testthat', 'tseries', 'vars', 'zoo' * installing *source* package 'SQUAREM' ... ** package 'SQUAREM' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SQUAREM' finding HTML links ... done fpiter html internal html squarem html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SQUAREM) Making 'packages.html' ... done * installing *source* package 'bitops' ... ** package 'bitops' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-bitops/00new/bitops/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bitops' finding HTML links ... done bitAnd html bitFlip html bitShiftL html cksum html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bitops) Making 'packages.html' ... done * installing *source* package 'clipr' ... ** package 'clipr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'clipr' finding HTML links ... done clear_clip html clipr html clipr_available html read_clip html read_clip_tbl html write_clip html write_last_clip html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clipr) Making 'packages.html' ... done * installing *source* package 'BH' ... ** package 'BH' successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices converting help for package 'BH' finding HTML links ... done BH-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) Making 'packages.html' ... done * installing *source* package 'rematch' ... ** package 'rematch' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rematch' finding HTML links ... done re_match html Rd warning: /tmp/RtmpdFuHgK/R.INSTALL37901b9b2f10/rematch/man/re_match.Rd:29: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpdFuHgK/R.INSTALL37901b9b2f10/rematch/man/re_match.Rd:20: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic rematch html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rematch) Making 'packages.html' ... done * installing *source* package 'prettyunits' ... ** package 'prettyunits' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'prettyunits' finding HTML links ... done pretty_bytes html pretty_dt html pretty_ms html pretty_sec html prettyunits html time_ago html vague_dt html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettyunits) Making 'packages.html' ... done * installing *source* package 'sys' ... ** package 'sys' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sys/00new/sys/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sys' finding HTML links ... done as_text html deprecated html exec html exec_r html quote html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sys) Making 'packages.html' ... done * installing *source* package 'zip' ... ** package 'zip' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/4.0.3/lib/R/lib -lR installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-zip/00new/zip ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'zip' finding HTML links ... done unzip html unzip_process html zip html zip_list html zip_process html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zip) Making 'packages.html' ... done * installing *source* package 'colorspace' ... ** package 'colorspace' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colorspace.c -o colorspace.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o colorspace.so colorspace.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'colorspace' finding HTML links ... done HLS html HSV html LAB html LUV html RGB html USSouthPolygon html XYZ html adjust_transparency html choose_palette html color-class html coords html cvd html cvd_emulator html cvd_image html demoplot html desaturate html divergingx_hcl html Rd warning: /tmp/RtmpOUVxgr/Rbuildd8c475b4cbea9/colorspace/man/divergingx_hcl.Rd:125: file link 'sequential_hcl' in package 'colorspace' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpOUVxgr/Rbuildd8c475b4cbea9/colorspace/man/divergingx_hcl.Rd:125: file link 'diverging_hcl' in package 'colorspace' does not exist and so has been treated as a topic hcl_color_picker html hcl_palettes html hclplot html hex html hex2RGB html lighten html max_chroma html mixcolor html polarLAB html polarLUV html rainbow_hcl html Rd warning: /tmp/RtmpOUVxgr/Rbuildd8c475b4cbea9/colorspace/man/rainbow_hcl.Rd:108: file link 'heat.colors' in package 'grDevices' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpOUVxgr/Rbuildd8c475b4cbea9/colorspace/man/rainbow_hcl.Rd:118: file link 'cm.colors' in package 'grDevices' does not exist and so has been treated as a topic readRGB html readhex html sRGB html scale_colour_binned_diverging html scale_colour_binned_divergingx html scale_colour_binned_qualitative html scale_colour_binned_sequential html scale_colour_continuous_diverging html scale_colour_continuous_divergingx html scale_colour_continuous_qualitative html scale_colour_continuous_sequential html scale_colour_discrete_diverging html scale_colour_discrete_divergingx html scale_colour_discrete_qualitative html scale_colour_discrete_sequential html simulate_cvd html specplot html swatchplot html whitepoint html writehex html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) Making 'packages.html' ... done * installing *source* package 'listenv' ... ** package 'listenv' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'listenv' finding HTML links ... done as.list.listenv html cash-.listenv html cash-set-.listenv html dim_na html get_variable html length.listenv html listenv html mapping html names.listenv html parse_env_subset html undim html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (listenv) Making 'packages.html' ... done * installing *source* package 'parallelly' ... ** package 'parallelly' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'parallelly' finding HTML links ... done as.cluster html autoStopCluster html availableConnections html availableCores html availableWorkers html cpuLoad html find_rshcmd html freeCores html getOptionOrEnvVar html isConnectionValid html isForkedNode html isLocalhostNode html makeClusterMPI html makeClusterPSOCK html parallelly.options html pid_exists html supportsMulticore html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelly) Making 'packages.html' ... done * installing *source* package 'utf8' ... ** package 'utf8' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'utf8' finding HTML links ... done as_utf8 html output html utf8-package html utf8_encode html utf8_format html utf8_normalize html utf8_print html utf8_width html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) Making 'packages.html' ... done * installing *source* package 'gmp' ... ** package 'gmp' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking for __gmpz_ui_sub in -lgmp... no configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org ERROR: configuration failed for package 'gmp' * removing '/opt/R/4.0.3/lib/R/library/gmp' * installing *source* package 'polynom' ... ** package 'polynom' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'polynom' finding HTML links ... done Math.polynomial html Ops.polynomial html as.function.polynomial html change.origin html deriv.polynomial html gcd html integral.polynomial html lines.polynomial html monic html plot.polynomial html points.polynomial html poly.calc html poly.orth html polylist html polynomial html predict.polynomial html solve.polynomial html summary.polynomial html zSummary.polynomial html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polynom) Making 'packages.html' ... done * installing *source* package 'sets' ... ** package 'sets' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c closure.c -o closure.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sets.so closure.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sets/00new/sets/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sets' finding HTML links ... done canonicalizeSetMapping html closure html cset html fuzzy html fuzzydocs html fuzzyfuns html Rd warning: /tmp/RtmpvQwq3k/R.INSTALL3e0010b168e7/sets/man/fuzzyfuns.Rd:117: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic fuzzyinference html gset html interval html labels html options html outer html plot html Rd warning: /tmp/RtmpvQwq3k/R.INSTALL3e0010b168e7/sets/man/plot.Rd:36: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic set html sets-internal html similarity html tuple html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sets) Making 'packages.html' ... done * installing *source* package 'mathjaxr' ... ** package 'mathjaxr' successfully unpacked and MD5 sums checked ** using staged installation ** libs ** arch - # install.libs.R will minify the Javascript if js is installed installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-mathjaxr/00new/mathjaxr ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mathjaxr' finding HTML links ... done mathjaxr-package html preview_rd html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mathjaxr) Making 'packages.html' ... done * installing *source* package 'rbibutils' ... ** package 'rbibutils' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c adsout.c -o adsout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c adsout_journals.c -o adsout_journals.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c any2xml.c -o any2xml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c args.c -o args.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bib2be.c -o bib2be.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibcore.c -o bibcore.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibentrydirectout.c -o bibentrydirectout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibentryout.c -o bibentryout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibl.c -o bibl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c biblatexin.c -o biblatexin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c biblatexout.c -o biblatexout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibprog.c -o bibprog.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibtexdirectin.c -o bibtexdirectin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibtexin.c -o bibtexin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibtexout.c -o bibtexout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibtextypes.c -o bibtextypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bibutils.c -o bibutils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bltypes.c -o bltypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bu_auth.c -o bu_auth.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c charsets.c -o charsets.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c copacin.c -o copacin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c copactypes.c -o copactypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ebiin.c -o ebiin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c endin.c -o endin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c endout.c -o endout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c endtypes.c -o endtypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c endxmlin.c -o endxmlin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c entities.c -o entities.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fields.c -o fields.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gb18030.c -o gb18030.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c generic.c -o generic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c intlist.c -o intlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c is_ws.c -o is_ws.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c isiin.c -o isiin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c isiout.c -o isiout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c isitypes.c -o isitypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c iso639_1.c -o iso639_1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c iso639_2.c -o iso639_2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c iso639_3.c -o iso639_3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c latex.c -o latex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c latex_parse.c -o latex_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c marc_auth.c -o marc_auth.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c medin.c -o medin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c modsin.c -o modsin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c modsout.c -o modsout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c modstypes.c -o modstypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nbibin.c -o nbibin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nbibout.c -o nbibout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nbibtypes.c -o nbibtypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c notes.c -o notes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pages.c -o pages.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reftypes.c -o reftypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c risin.c -o risin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c risout.c -o risout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ristypes.c -o ristypes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c serialno.c -o serialno.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slist.c -o slist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c str.c -o str.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c str_conv.c -o str_conv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsearch.c -o strsearch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c title.c -o title.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tomods.c -o tomods.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c type.c -o type.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unicode.c -o unicode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c url.c -o url.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c vplist.c -o vplist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wordin.c -o wordin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wordout.c -o wordout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xml.c -o xml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xml2any.c -o xml2any.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xml_encoding.c -o xml_encoding.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rbibutils.so adsout.o adsout_journals.o any2xml.o args.o bib2be.o bibcore.o bibentrydirectout.o bibentryout.o bibl.o biblatexin.o biblatexout.o bibprog.o bibtexdirectin.o bibtexin.o bibtexout.o bibtextypes.o bibutils.o bltypes.o bu_auth.o charsets.o copacin.o copactypes.o ebiin.o endin.o endout.o endtypes.o endxmlin.o entities.o fields.o gb18030.o generic.o init.o intlist.o is_ws.o isiin.o isiout.o isitypes.o iso639_1.o iso639_2.o iso639_3.o latex.o latex_parse.o marc_auth.o medin.o modsin.o modsout.o modstypes.o name.o nbibin.o nbibout.o nbibtypes.o notes.o pages.o reftypes.o risin.o risout.o ristypes.o serialno.o slist.o str.o str_conv.o strsearch.o title.o tomods.o type.o unicode.o url.o utf8.o vplist.o wordin.o wordout.o xml.o xml2any.o xml_encoding.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rbibutils/00new/rbibutils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rbibutils' finding HTML links ... done bibConvert html rbibutils-package html readBib html readBibentry html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rbibutils) Making 'packages.html' ... done * installing *source* package 'curl' ... ** package 'curl' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lcurl ** libs rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'curl' finding HTML links ... done curl html curl_download html curl_echo html curl_escape html curl_fetch html curl_options html curl_upload html file_writer html handle html handle_cookies html ie_proxy html multi html multipart html nslookup html parse_date html parse_headers html send_mail html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) Making 'packages.html' ... done * installing *source* package 'iterators' ... ** package 'iterators' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'iterators' finding HTML links ... done iapply html icount html idiv html iread.table html ireadLines html irnorm html isplit html iter html iterators-package html makeIwrapper html nextElem html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterators) Making 'packages.html' ... done * installing *source* package 'gower' ... ** package 'gower' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c R_register_native.c -o R_register_native.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c gower.c -o gower.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gower.so R_register_native.o gower.o -fopenmp -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gower/00new/gower/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gower' finding HTML links ... done gower-package html gower_dist html gower_topn html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gower) Making 'packages.html' ... done * installing *source* package 'timeDate' ... ** package 'timeDate' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'sample' from package 'base' in package 'timeDate' Creating a generic function for 'getDataPart' from package 'methods' in package 'timeDate' Creating a generic function for 'abline' from package 'graphics' in package 'timeDate' ** help *** installing help indices converting help for package 'timeDate' finding HTML links ... done 00timeDate-package html base-c html base-diff html base-difftimeDate html base-format html base-length html base-rep html base-rev html base-round html base-sample html base-sort html base-start html base-subset html base-summary html base-unique html calendar-Easter html calendar-align html calendar-dayOfWeek html calendar-dayOfYear html calendar-endpoints html calendar-firstDay html calendar-isBizday html calendar-isRegular html calendar-isWeekday html calendar-julian html calendar-nDay html calendar-onOrAfter html calendar-periods html class-timeDate html graphics-plot html holiday-Dates html holiday-LONDON html holiday-Listing html holiday-NERC html holiday-NYSE html holiday-TSX html holiday-ZURICH html holiday html methods-as html methods-mathOps html methods-names html methods-show html options-RmetricsOptions html options-currentYear html options-myFinCenter html options-myUnits html stats-blockStart html stats-kurtosis html stats-na-fail html stats-skewness html stats-window html timeDate-Calendar html timeDate-DaylightSavingTime html timeDate-Sequence html timeDate-Sys.timeDate html timeDate-finCenter html timeDate-listFinCenter html timeDate-midnightStandard html timeDate-rulesFinCenter html timeDate-whichFormat html timeDate html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timeDate) Making 'packages.html' ... done * installing *source* package 'lazyeval' ... ** package 'lazyeval' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lazyeval' finding HTML links ... done all_dots html as.lazy html as_name html ast_ html auto_name html call_modify html call_new html common_env html expr_label html f_capture html f_eval html f_interp html f_list html f_new html f_rhs html f_text html f_unwrap html function_new html interp html is_formula html is_lang html lazy_ html lazy_dots html lazy_eval html make_call html missing_arg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyeval) Making 'packages.html' ... done * installing *source* package 'mime' ... ** package 'mime' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mime/00new/mime/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mime' finding HTML links ... done guess_type html mimemap html parse_multipart html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) Making 'packages.html' ... done * installing *source* package 'farver' ... ** package 'farver' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ColorSpace.cpp -o ColorSpace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Comparison.cpp -o Comparison.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Conversion.cpp -o Conversion.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c encode.cpp -o encode.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c farver.cpp -o farver.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'farver' finding HTML links ... done as_white_ref html compare_colour html convert_colour html decode_colour html encode_colour html farver-package html manip_channel html native_encoding html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) Making 'packages.html' ... done * installing *source* package 'labeling' ... ** package 'labeling' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'labeling' finding HTML links ... done extended html extended.figures html gnuplot html heckbert html labeling-internal html labeling-package html matplotlib html nelder html rpretty html sparks html thayer html wilkinson html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) Making 'packages.html' ... done * installing *source* package 'RColorBrewer' ... ** package 'RColorBrewer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RColorBrewer' finding HTML links ... done ColorBrewer html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) Making 'packages.html' ... done * installing *source* package 'viridisLite' ... ** package 'viridisLite' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'viridisLite' finding HTML links ... done viridis html viridis.map html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) Making 'packages.html' ... done * installing *source* package 'png' ... ** package 'png' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include `libpng-config --cflags` -fpic -g -O2 -c read.c -o read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include `libpng-config --cflags` -fpic -g -O2 -c write.c -o write.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o png.so read.o write.o -L/usr/lib64 -lpng16 -lm -lz -lm -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-png/00new/png/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'png' finding HTML links ... done readPNG html writePNG html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (png) Making 'packages.html' ... done * installing *source* package 'jpeg' ... ** package 'jpeg' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o jpeg.so read.o write.o -ljpeg -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-jpeg/00new/jpeg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'jpeg' finding HTML links ... done readJPEG html writeJPEG html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jpeg) Making 'packages.html' ... done * installing *source* package 'rstudioapi' ... ** package 'rstudioapi' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rstudioapi' finding HTML links ... done addTheme html applyTheme html askForPassword html askForSecret html bugReport html build-tools html callFun html chunk-callbacks html convertTheme html createProjectTemplate html dictionaries html document_position html document_range html executeCommand html file-dialogs html filesPaneNavigate html getActiveProject html getRStudioPackageDependencies html getThemeInfo html getThemes html getVersion html hasColorConsole html hasFun html highlightUi html isAvailable html jobAdd html jobAddOutput html jobAddProgress html jobRemove html jobRunScript html jobSetProgress html jobSetState html jobSetStatus html launcher html launcherConfig html launcherContainer html launcherControlJob html launcherGetJob html launcherHostMount html launcherNfsMount html launcherPlacementConstraint html launcherResourceLimit html launcherSubmitJob html launcherSubmitR html navigateToFile html persistent-values html previewRd html previewSql html primary_selection html projects html readPreference html readRStudioPreference html removeTheme html restartSession html rstudio-documents html rstudio-editors html savePlotAsImage html selections html sendToConsole html showDialog html showPrompt html showQuestion html sourceMarkers html systemUsername html terminalActivate html terminalBuffer html terminalBusy html terminalClear html terminalContext html terminalCreate html terminalExecute html terminalExitCode html terminalKill html terminalList html terminalRunning html terminalSend html terminalVisible html translateLocalUrl html updateDialog html userIdentity html versionInfo html viewer html writePreference html writeRStudioPreference html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstudioapi) Making 'packages.html' ... done * installing *source* package 'rngWELL' ... ** package 'rngWELL' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for inttypes.h... (cached) yes checking whether byte ordering is bigendian... no checking size of unsigned long long... 8 configure: creating ./config.status config.status: creating src/config.h config.status: src/config.h is unchanged ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL1024a.c -o WELL1024a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL1024b.c -o WELL1024b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL19937a.c -o WELL19937a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL19937b.c -o WELL19937b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL19937c.c -o WELL19937c.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL21701a.c -o WELL21701a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL23209a.c -o WELL23209a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL23209b.c -o WELL23209b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL44497a.c -o WELL44497a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL44497b.c -o WELL44497b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL512a.c -o WELL512a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL521a.c -o WELL521a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL521b.c -o WELL521b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL607a.c -o WELL607a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL607b.c -o WELL607b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL800a.c -o WELL800a.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c WELL800b.c -o WELL800b.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rngWELL.c -o rngWELL.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runifInterface.c -o runifInterface.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c version.c -o version.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rngWELL.so WELL1024a.o WELL1024b.o WELL19937a.o WELL19937b.o WELL19937c.o WELL21701a.o WELL23209a.o WELL23209b.o WELL44497a.o WELL44497b.o WELL512a.o WELL521a.o WELL521b.o WELL607a.o WELL607b.o WELL800a.o WELL800b.o init.o rngWELL.o runifInterface.o version.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rngWELL/00new/rngWELL/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rngWELL' finding HTML links ... done pseudoRNG html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rngWELL) Making 'packages.html' ... done * installing *source* package 'misc3d' ... ** package 'misc3d' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Warning: no DISPLAY variable so Tk is not available ** help *** installing help indices converting help for package 'misc3d' finding HTML links ... done computeContour3d html contour3d html Rd warning: /tmp/RtmpzTe8i1/R.INSTALL4a544d7a8a8/misc3d/man/contour3d.Rd:61: file link 'drawScene.rgl' in package 'misc3d' does not exist and so has been treated as a topic drawScene html Rd warning: /tmp/RtmpzTe8i1/R.INSTALL4a544d7a8a8/misc3d/man/drawScene.Rd:28: file link 'panel.3dwire' in package 'lattice' does not exist and so has been treated as a topic exportScene html image3d html kde3d html lighting html linesTetrahedra html parametric3d html Rd warning: /tmp/RtmpzTe8i1/R.INSTALL4a544d7a8a8/misc3d/man/parametric3d.Rd:52: file link 'drawScene.rgl' in package 'misc3d' does not exist and so has been treated as a topic pointsTetrahedra html slices3d html surfaceTriangles html teapot html triangles html ** building package indices ** testing if installed package can be loaded from temporary location Warning: no DISPLAY variable so Tk is not available ** testing if installed package can be loaded from final location Warning: no DISPLAY variable so Tk is not available ** testing if installed package keeps a record of temporary installation path * DONE (misc3d) Making 'packages.html' ... done * installing *source* package 'tmvnsim' ... ** package 'tmvnsim' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Fortran2CWrapper.c -o Fortran2CWrapper.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tmvnghk.f90 -o tmvnghk.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tmvnsim.so Fortran2CWrapper.o tmvnghk.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tmvnsim/00new/tmvnsim/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tmvnsim' finding HTML links ... done tmvnsim html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tmvnsim) Making 'packages.html' ... done * installing *source* package 'matrixStats' ... ** package 'matrixStats' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'matrixStats' finding HTML links ... done allocMatrix html anyMissing html binCounts html binMeans html diff2 html indexByRow html logSumExp html matrixStats-package html mean2 html rowAlls html rowAvgsPerColSet html rowCollapse html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowCollapse.Rd:55: file link '[' in package 'base' does not exist and so has been treated as a topic rowCounts html rowCumsums html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowCumsums.Rd:83: file link 'cumprod' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowCumsums.Rd:84: file link 'cummin' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowCumsums.Rd:84: file link 'cummax' in package 'base' does not exist and so has been treated as a topic rowDiffs html rowIQRs html rowLogSumExps html rowMeans2 html rowMedians html rowOrderStats html rowProds html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowProds.Rd:54: file link 'is.nan' in package 'base' does not exist and so has been treated as a topic rowQuantiles html rowRanges html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/rowRanges.Rd:52: file link 'pmin.int' in package 'base' does not exist and so has been treated as a topic rowRanks html rowSds html rowSums2 html rowTabulates html rowVars html rowWeightedMeans html rowWeightedMedians html signTabulate html sum2 html validateIndices html varDiff html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/varDiff.Rd:80: file link 'var' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/varDiff.Rd:103: file link 'var' in package 'stats' does not exist and so has been treated as a topic weightedMad html weightedMean html weightedMedian html weightedVar html Rd warning: /tmp/RtmpwyzMl4/R.INSTALL4b5046f5fb6e/matrixStats/man/weightedVar.Rd:73: file link 'var' in package 'stats' does not exist and so has been treated as a topic x_OP_y html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) Making 'packages.html' ... done * installing *source* package 'globals' ... ** package 'globals' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'globals' finding HTML links ... done Globals html cleanup.Globals html globalsByName html globalsOf html packagesOf.Globals html private_length html walkAST html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (globals) Making 'packages.html' ... done * installing *source* package 'warp' ... ** package 'warp' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c boundary.c -o boundary.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c change.c -o change.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coercion.c -o coercion.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c date.c -o date.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.c -o distance.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c divmod.c -o divmod.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c get.c -o get.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c timezone.c -o timezone.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o warp.so boundary.o change.o coercion.o date.o distance.o divmod.o get.o init.o timezone.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-warp/00new/warp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'warp' finding HTML links ... done warp-package html warp_boundary html warp_change html warp_distance html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (warp) Making 'packages.html' ... done * installing *source* package 'rprojroot' ... ** package 'rprojroot' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rprojroot' finding HTML links ... done criteria html deprecated html find_root html find_root_file html root_criterion html rprojroot-package html thisfile html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rprojroot) Making 'packages.html' ... done * installing *source* package 'magrittr' ... ** package 'magrittr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'magrittr' finding HTML links ... done aliases html compound html debug_fseq html debug_pipe html exposition html faq-pipe-gender html freduce html fseq html functions html magrittr-package html pipe html pipe_eager_lexical html print.fseq html tee html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) Making 'packages.html' ... done * installing *source* package 'R6' ... ** package 'R6' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'R6' finding HTML links ... done R6Class html as.list.R6 html is.R6 html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) Making 'packages.html' ... done * installing *source* package 'stringi' ... ** package 'stringi' successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /opt/R/4.0.3/lib/R checking for R... /opt/R/4.0.3/lib/R/bin/R checking for endianness... little checking for R >= 3.1.0 for C++11 use... yes checking for R < 3.4.0 for CXX1X flag use... no checking for cat... /usr/bin/cat checking for local ICUDT_DIR... icu69/data checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking whether the C++ compiler supports the long long type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with pkg-config for the system ICU4C... 60.3 checking for ICU4C >= 55... yes checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done checking whether an ICU4C-based project can be built... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking programmatically if U_CHARSET_IS_UTF8 is defined and set... no checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes checking the capabilities of the ICU data library (ucol)... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD=CXX_STD=CXX11 STRINGI_CFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_CXXFLAGS= -fpic STRINGI_LDFLAGS=-L/usr/lib64 STRINGI_LIBS=-licui18n -licuuc -licudata *** Compiler settings used: CC=gcc LD=g++ -std=gnu++11 CFLAGS=-g -O2 -fpic CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG CXX=g++ -std=gnu++11 CXXFLAGS=-g -O2 -fpic LDFLAGS= LIBS= ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib64 -licui18n -licuuc -licudata -L/opt/R/4.0.3/lib/R/lib -lR installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stringi' finding HTML links ... done about_arguments html about_encoding html about_locale html about_search html about_search_boundaries html about_search_charclass html about_search_coll html about_search_fixed html about_search_regex html about_stringi html operator_add html operator_compare html operator_dollar html stri_compare html stri_count html stri_count_boundaries html stri_datetime_add html stri_datetime_create html stri_datetime_fields html stri_datetime_format html stri_datetime_fstr html stri_datetime_now html stri_datetime_symbols html stri_detect html stri_dup html stri_duplicated html stri_enc_detect html stri_enc_detect2 html stri_enc_fromutf32 html stri_enc_info html stri_enc_isascii html stri_enc_isutf16 html stri_enc_isutf8 html stri_enc_list html stri_enc_mark html stri_enc_set html stri_enc_toascii html stri_enc_tonative html stri_enc_toutf32 html stri_enc_toutf8 html stri_encode html stri_escape_unicode html stri_extract html stri_extract_boundaries html stri_flatten html stri_info html stri_isempty html stri_join html stri_join_list html stri_length html stri_list2matrix html stri_locale_info html stri_locale_list html stri_locale_set html stri_locate html stri_locate_boundaries html stri_match html stri_na2empty html stri_numbytes html stri_opts_brkiter html stri_opts_collator html stri_opts_fixed html stri_opts_regex html stri_order html stri_pad html stri_rand_lipsum html stri_rand_shuffle html stri_rand_strings html stri_rank html stri_read_lines html stri_read_raw html stri_remove_empty html stri_replace html stri_replace_na html stri_reverse html stri_sort html stri_sort_key html stri_split html stri_split_boundaries html stri_split_lines html stri_startsendswith html stri_stats_general html stri_stats_latex html stri_sub html stri_sub_all html stri_subset html stri_timezone_info html stri_timezone_list html stri_timezone_set html stri_trans_casemap html stri_trans_char html stri_trans_general html stri_trans_list html stri_trans_nf html stri_trim html stri_unescape_unicode html stri_unique html stri_width html stri_wrap html stri_write_lines html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringi) Making 'packages.html' ... done * installing *source* package 'fansi' ... ** package 'fansi' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fansi' finding HTML links ... done fansi html fansi_lines html has_ctl html html_code_block html html_esc html nchar_ctl html set_knit_hooks html sgr_to_html html strip_ctl html strsplit_ctl html Rd warning: /tmp/Rtmp7d4fRf/R.INSTALL53f326a45/fansi/man/strsplit_ctl.Rd:35: file link 'regular expression' in package 'base' does not exist and so has been treated as a topic strtrim_ctl html Rd warning: /tmp/Rtmp7d4fRf/R.INSTALL53f326a45/fansi/man/strtrim_ctl.Rd:33: file link 'as.character' in package 'base' does not exist and so has been treated as a topic strwrap_ctl html Rd warning: /tmp/Rtmp7d4fRf/R.INSTALL53f326a45/fansi/man/strwrap_ctl.Rd:72: file link 'as.character' in package 'base' does not exist and so has been treated as a topic substr_ctl html tabs_as_spaces html term_cap_test html unhandled_ctl html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) Making 'packages.html' ... done * installing *source* package 'pkgconfig' ... ** package 'pkgconfig' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pkgconfig' finding HTML links ... done get_config html pkgconfig-package html set_config html set_config_in html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) Making 'packages.html' ... done * installing *source* package 'cpp11' ... ** package 'cpp11' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cpp11' finding HTML links ... done cpp11-package html cpp_register html cpp_source html cpp_vendor html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) Making 'packages.html' ... done * installing *source* package 'Formula' ... ** package 'Formula' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Formula' finding HTML links ... done Formula html model.frame.Formula html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Formula) Making 'packages.html' ... done * installing *source* package 'numDeriv' ... ** package 'numDeriv' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'numDeriv' finding HTML links ... done 00.numDeriv.Intro html genD html grad html hessian html jacobian html numDeriv-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (numDeriv) Making 'packages.html' ... done * installing *source* package 'bdsmatrix' ... ** package 'bdsmatrix' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_init_bdsmatrix.c -o R_init_bdsmatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_index1.c -o bdsmatrix_index1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_index2.c -o bdsmatrix_index2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_index3.c -o bdsmatrix_index3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_prod.c -o bdsmatrix_prod.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_prod2.c -o bdsmatrix_prod2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_prod3.c -o bdsmatrix_prod3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdsmatrix_prod4.c -o bdsmatrix_prod4.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv4.c -o chinv4.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv5.c -o chinv5.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky4.c -o cholesky4.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky5.c -o cholesky5.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve4.c -o chsolve4.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve5.c -o chsolve5.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dmatrix.c -o dmatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gcback.c -o gcback.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gchol.c -o gchol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gchol_bds.c -o gchol_bds.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o bdsmatrix.so R_init_bdsmatrix.o bdsmatrix_index1.o bdsmatrix_index2.o bdsmatrix_index3.o bdsmatrix_prod.o bdsmatrix_prod2.o bdsmatrix_prod3.o bdsmatrix_prod4.o chinv4.o chinv5.o cholesky4.o cholesky5.o chsolve4.o chsolve5.o dmatrix.o gcback.o gchol.o gchol_bds.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-bdsmatrix/00new/bdsmatrix/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'diag' from package 'base' in package 'bdsmatrix' Creating a generic function for 'diag<-' from package 'base' in package 'bdsmatrix' Creating a new generic function for 'backsolve' in package 'bdsmatrix' ** help *** installing help indices converting help for package 'bdsmatrix' finding HTML links ... done as.matrix.bdsmatrix html backsolve html bdsBlock html bdsI html bdsmatrix-class html bdsmatrix html bdsmatrix.ibd html bdsmatrix.reconcile html gchol-class html gchol html gchol.bdsmatrix-class html listbdsmatrix html solve.bdsmatrix html solve.gchol html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bdsmatrix) Making 'packages.html' ... done * installing *source* package 'mvtnorm' ... ** package 'mvtnorm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miwa.c -o miwa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c mvt.f -o mvt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mvtnorm-init.c -o mvtnorm-init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tvpack.f -o tvpack.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mvtnorm.so C_FORTRAN_interface.o miwa.o mvt.o mvtnorm-init.o tvpack.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mvtnorm/00new/mvtnorm/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mvtnorm' finding HTML links ... done Mvnorm html Mvt html algorithms html pmvnorm html pmvt html qmvnorm html qmvt html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvtnorm) Making 'packages.html' ... done * installing *source* package 'modeltools' ... ** package 'modeltools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'na.pass' from package 'stats' in package 'modeltools' Creating a generic function from function 'MEapply' in package 'modeltools' ** help *** installing help indices converting help for package 'modeltools' finding HTML links ... done FormulaParts-class html Generics html MEapply html ModelEnv-class html ModelEnvFormula-class html ModelEnvFormula html ModelEnvMatrix html Predict html StatModel-class html Rd warning: /tmp/RtmpbRzR3Q/R.INSTALL57b3663481bb/modeltools/man/StatModel-class.Rd:63: file link 'lm.fit' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbRzR3Q/R.INSTALL57b3663481bb/modeltools/man/StatModel-class.Rd:63: file link 'glm.fit' in package 'stats' does not exist and so has been treated as a topic StatModelCapabilities-class html info html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modeltools) Making 'packages.html' ... done * installing *source* package 'DBI' ... ** package 'DBI' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DBI' finding HTML links ... done ANSI html DBI-package html DBIConnection-class html DBIConnector-class html DBIDriver-class html DBIObject-class html DBIResult-class html Id html SQL html dbAppendTable html dbBind html dbCallProc html dbCanConnect html dbClearResult html dbColumnInfo html dbConnect html dbCreateTable html dbDataType html dbDisconnect html dbDriver html dbExecute html dbExistsTable html dbFetch html dbGetConnectArgs html dbGetDBIVersion html dbGetException html dbGetInfo html dbGetQuery html dbGetRowCount html dbGetRowsAffected html dbGetStatement html dbHasCompleted html dbIsReadOnly html dbIsValid html dbListConnections html dbListFields html dbListObjects html dbListResults html dbListTables html dbQuoteIdentifier html dbQuoteLiteral html dbQuoteString html dbReadTable html dbRemoveTable html dbSendQuery html dbSendStatement html dbSetDataMappings html dbUnquoteIdentifier html dbWithTransaction html dbWriteTable html hidden_aliases html make.db.names html rownames html sqlAppendTable html sqlCreateTable html sqlData html sqlInterpolate html sqlParseVariables html transactions html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DBI) Making 'packages.html' ... done * installing *source* package 'carData' ... ** package 'carData' successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices converting help for package 'carData' finding HTML links ... done AMSsurvey html Adler html Angell html Anscombe html Arrests html BEPS html Baumann html Bfox html Blackmore html Burt html CES11 html CanPop html Chile html Chirot html Cowles html Davis html DavisThin html Depredations html Duncan html Ericksen html Florida html Freedman html Friendly html GSSvocab html Ginzberg html Greene html Guyer html Hartnagel html Highway1 html KosteckiDillon html Leinhardt html LoBD html Mandel html Migration html Moore html MplsStops html Mplsdemo html Mroz html OBrienKaiser html OBrienKaiserLong html Ornstein html Pottery html Prestige html Quartet html Robey html Rossi html SLID html Sahlins html Salaries html Soils html States html TitanicSurvival html Transact html UN html UN98 html USPop html Vocab html WVS html WeightLoss html Wells html Womenlf html Wong html Wool html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carData) Making 'packages.html' ... done * installing *source* package 'abind' ... ** package 'abind' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'abind' finding HTML links ... done abind html acorn html adrop html afill html asub html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) Making 'packages.html' ... done * installing *source* package 'withr' ... ** package 'withr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'withr' finding HTML links ... done defer html devices html Rd warning: /tmp/RtmpMuIz1F/R.INSTALL59656f3d9303/withr/man/devices.Rd:228: file link 'X11' in package 'grDevices' does not exist and so has been treated as a topic makevars_user html set_makevars html with_ html with_collate html with_connection html with_db_connection html with_dir html with_envvar html with_file html with_gctorture2 html with_libpaths html with_locale html with_makevars html with_options html with_package html Rd warning: /tmp/RtmpMuIz1F/R.INSTALL59656f3d9303/withr/man/with_package.Rd:68: file link '.libPaths' in package 'base' does not exist and so has been treated as a topic with_par html with_path html with_rng_version html with_seed html with_sink html with_temp_libpaths html with_tempfile html with_timezone html withr html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) Making 'packages.html' ... done * installing *source* package 'digest' ... ** package 'digest' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'digest' finding HTML links ... done AES html digest html digest2int html hmac html makeRaw html sha1 html vdigest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) Making 'packages.html' ... done * installing *source* package 'jsonlite' ... ** package 'jsonlite' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'asJSON' with signature '"blob"': no definition for class "blob" ** help *** installing help indices converting help for package 'jsonlite' finding HTML links ... done base64 html flatten html fromJSON html prettify html rbind_pages html read_json html serializeJSON html stream_in html unbox html validate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) Making 'packages.html' ... done * installing *source* package 'crayon' ... ** package 'crayon' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'crayon' finding HTML links ... done chr html col_align html col_nchar html col_strsplit html col_substr html col_substring html combine_styles html concat html crayon html drop_style html has_color html has_style html hyperlink html make_style html num_ansi_colors html num_colors html show_ansi_colors html start.crayon html strip_style html style html styles html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) Making 'packages.html' ... done * installing *source* package 'yaml' ... ** package 'yaml' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'yaml' finding HTML links ... done as.yaml html read_yaml html write_yaml html yaml.load html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) Making 'packages.html' ... done * installing *source* package 'gtools' ... ** package 'gtools' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gtools_load.c -o gtools_load.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c roman2int.c -o roman2int.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setTCPNoDelay.c -o setTCPNoDelay.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gtools.so gtools_load.o roman2int.o setTCPNoDelay.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gtools/00new/gtools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gtools' finding HTML links ... done ASCIIfy html ELISA html asc html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/asc.Rd:17: file link 'sapply' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/asc.Rd:39: file link 'charToRaw' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/asc.Rd:40: file link 'rawToChar' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/asc.Rd:41: file link 'as.raw' in package 'base' does not exist and so has been treated as a topic ask html badDend html baseOf html binsearch html capwords html checkRVersion html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/checkRVersion.Rd:35: file link 'R.Version' in package 'base' does not exist and so has been treated as a topic combinations html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/combinations.Rd:43: file link 'choose' in package 'base' does not exist and so has been treated as a topic defmacro html dirichlet html foldchange html getDependencies html gtools-defunct html gtools-deprecated html invalid html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/invalid.Rd:19: file link 'is.na' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/invalid.Rd:20: file link 'is.null' in package 'base' does not exist and so has been treated as a topic keywords html lastAdd html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/lastAdd.Rd:34: file link '.Last' in package 'base' does not exist and so has been treated as a topic loadedPackages html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/loadedPackages.Rd:29: file link 'loadedNamespaces' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/loadedPackages.Rd:30: file link 'packageVersion' in package 'utils' does not exist and so has been treated as a topic logit html mixedsort html na.replace html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/na.replace.Rd:29: file link 'is.na' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/na.replace.Rd:29: file link 'na.omit' in package 'stats' does not exist and so has been treated as a topic oddeven html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/oddeven.Rd:19: file link 'round' in package 'base' does not exist and so has been treated as a topic permute html quantcut html roman2int html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/roman2int.Rd:25: file link 'as.roman' in package 'utils' does not exist and so has been treated as a topic running html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/running.Rd:59: file link 'sapply' in package 'base' does not exist and so has been treated as a topic scat html setTCPNoDelay html smartbind html split_path html stars.pval html unByteCode html Rd warning: /tmp/Rtmp0wepzb/R.INSTALL5c7834d759a9/gtools/man/unByteCode.Rd:53: file link 'disassemble' in package 'compiler' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtools) Making 'packages.html' ... done * installing *source* package 'plotrix' ... ** package 'plotrix' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotrix' finding HTML links ... done ablineclip html add.ps html addtable2plot html arctext html axis.break html axis.mult html barNest html barlabels html barp html battleship.plot html bin.wind.records html binciW html binciWl html binciWu html box.heresy html boxed.labels html brkdn.plot html brkdnNest html bumpchart html categoryReshape html centipede.plot html clean.args html clock24.plot html clplot html cluster.overplot html clustered.dotplots html color.axis html color.gradient html color.id html color.legend html color.scale html color.scale.lines html color2D.matplot html corner.label html count.overplot html cylindrect html death_reg html dendroPlot html densityGrid html diamondplot html dispersion html do.first html dotplot.mtb html draw.arc html draw.circle html draw.ellipse html draw.radial.line html draw.tilted.sector html drawNestedBars html drawSectorAnnulus html ehplot html election html emptyspace html fan.plot html feather.plot html fill.corner html find_max_cell html floating.pie html fullaxis html gantt.chart html gap.barplot html gap.boxplot html gap.plot html gap_barp html get.breaks html get.gantt.info html get.segs html get.soil.texture html get.tablepos html get.triprop html getFigCtr html getIntersectList html getMarginWidth html getYmult html get_axispos3d html gradient.rect html hexagon html histStack html intersectDiagram html jiggle html joyPlot html kiteChart html l2010 html labbePlot html ladderplot html legendg html lengthKey html makeDensityMatrix html makeIntersectList html maxEmptyRect html mtext3d html multhist html multivari html multsymbolbox html oz.windrose html oz.windrose.legend html p2p_arrows html panes html pasteCols html paxis3d html perspx html pie.labels html pie3D html pie3D.labels html placeLabels html plotCI html plotH html plot_bg html plotrix-package html polar.plot html polygon.shadow html print.brklist html propbrk html psegments3d html ptext3d html pyramid.plot html radial.grid html radial.pie html radial.plot html radial.plot.labels html radialtext html raw.means.plot html rectFill html rescale html revaxis html ruginv html seats html size_n_color html sizeplot html sizetree html sliceArray html smoothColors html soil.texture html soil.texture.uk html soils html spread.labels html spreadout html stackpoly html staircase.plot html staircasePlot html starPie html staxlab html std.error html sumbrk html symbolbarplot html symbolbox html tab.title html taylor.diagram html textbox html thigmophobe html thigmophobe.labels html triax.abline html triax.fill html triax.frame html triax.plot html triax.points html tsxpos html twoord.plot html twoord.stackplot html valid.n html vectorField html violin_plot html weighted.hist html zoomInPlot html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotrix) Making 'packages.html' ... done * installing *source* package 'proxy' ... ** package 'proxy' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c apply.c -o apply.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arrayIndex.c -o arrayIndex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c distance.c -o distance.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dll.c -o dll.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c util.c -o util.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o proxy.so apply.o arrayIndex.o distance.o dll.o util.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-proxy/00new/proxy/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'proxy' finding HTML links ... done dist html registry html rowSums.dist html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proxy) Making 'packages.html' ... done * installing *source* package 'estimability' ... ** package 'estimability' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'estimability' finding HTML links ... done epredict.lm html estble-subspace html estimability-package html nonest.basis html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (estimability) Making 'packages.html' ... done * installing *source* package 'xtable' ... ** package 'xtable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xtable' finding HTML links ... done autoformat html print.xtable html print.xtableMatharray html sanitize html string html table.attributes html tli html toLatex html xtable-internal html xtable html xtableFtable html xtableList html xtableMatharray html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) Making 'packages.html' ... done * installing *source* package 'BiasedUrn' ... ** package 'BiasedUrn' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c fnchyppr.cpp -o fnchyppr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c stoc1.cpp -o stoc1.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c stoc3.cpp -o stoc3.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c stocR.cpp -o stocR.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c urn1.cpp -o urn1.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c urn2.cpp -o urn2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD=1 -DMAXCOLORS=32 -I/usr/local/include -fpic -g -O2 -c wnchyppr.cpp -o wnchyppr.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o BiasedUrn.so fnchyppr.o stoc1.o stoc3.o stocR.o urn1.o urn2.o wnchyppr.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-BiasedUrn/00new/BiasedUrn/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BiasedUrn' finding HTML links ... done BiasedUrn-1-Package html BiasedUrn-2-Univariate html BiasedUrn-3-Multivariate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiasedUrn) Making 'packages.html' ... done * installing *source* package 'trust' ... ** package 'trust' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'trust' finding HTML links ... done trust html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trust) Making 'packages.html' ... done * installing *source* package 'lpSolve' ... ** package 'lpSolve' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c colamd.c -o colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c commonlib.c -o commonlib.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c hbio.c -o hbio.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c ini.c -o ini.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c isfixedvar.c -o isfixedvar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_Hash.c -o lp_Hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_LUSOL.c -o lp_LUSOL.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_MDO.c -o lp_MDO.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_MPS.c -o lp_MPS.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_SOS.c -o lp_SOS.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_crash.c -o lp_crash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_lib.c -o lp_lib.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_matrix.c -o lp_matrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_mipbb.c -o lp_mipbb.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_params.c -o lp_params.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_presolve.c -o lp_presolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_price.c -o lp_price.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_pricePSE.c -o lp_pricePSE.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_report.c -o lp_report.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_rlp.c -o lp_rlp.o In file included from lp_rlp.c:97: lp_rlp.h: In function 'lp_yy_fatal_error': lp_rlp.h:1804:19: warning: passing argument 1 of 'lex_fatal_error' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] lex_fatal_error (msg); /* exit( YY_EXIT_FAILURE ); */ ^~~ In file included from lp_rlp.c:32: yacc_read.h:6:28: note: expected 'char *' but argument is of type 'const char *' void lex_fatal_error(char *msg); ~~~~~~^~~ gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_scale.c -o lp_scale.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_simplex.c -o lp_simplex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_utils.c -o lp_utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lp_wlp.c -o lp_wlp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lpslink56.c -o lpslink56.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lusol.c -o lusol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c lusolio.c -o lusolio.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c mmio.c -o mmio.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c myblas.c -o myblas.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c sparselib.c -o sparselib.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -I/usr/local/include -fpic -g -O2 -c yacc_read.c -o yacc_read.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lpSolve.so colamd.o commonlib.o hbio.o ini.o init.o isfixedvar.o lp_Hash.o lp_LUSOL.o lp_MDO.o lp_MPS.o lp_SOS.o lp_crash.o lp_lib.o lp_matrix.o lp_mipbb.o lp_params.o lp_presolve.o lp_price.o lp_pricePSE.o lp_report.o lp_rlp.o lp_scale.o lp_simplex.o lp_utils.o lp_wlp.o lpslink56.o lusol.o lusolio.o mmio.o myblas.o sparselib.o yacc_read.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lpSolve/00new/lpSolve/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lpSolve' finding HTML links ... done lp html lp.assign html lp.object html lp.transport html make.q8 html print.lp html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lpSolve) Making 'packages.html' ... done * installing *source* package 'rle' ... ** package 'rle' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rle_utils.c -o rle_utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rle.so init.o rle_utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rle/00new/rle/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rle' finding HTML links ... done Extract.rle html Math.rle html Ops.rle html Summary.rle html as.rle html compress html compress.rle html rep.rle html rle-deprecated html rle-methods html rle-package html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rle) Making 'packages.html' ... done * installing *source* package 'Rcpp' ... ** package 'Rcpp' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rcpp' finding HTML links ... done CppClass-class html CppConstructor-class html CppField-class html CppFunction-class html CppObject-class html CppOverloadedMethods-class html DollarNames-methods html Module-class html Module html Rcpp-deprecated html Rcpp-internal html Rcpp-package html Rcpp.package.skeleton html Rcpp.plugin.maker html RcppLdFlags html RcppUnitTests html compileAttributes html compilerCheck html cppFunction html demangle html dependsAttribute html evalCpp html exportAttribute html exposeClass html formals html getRcppVersion html interfacesAttribute html loadModule html loadRcppModules-deprecated html pluginsAttribute html populate html registerPlugin html setRcppClass html sourceCpp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) Making 'packages.html' ... done * installing *source* package 'gtable' ... ** package 'gtable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gtable' finding HTML links ... done bind html gtable-package html gtable html gtable_add_cols html gtable_add_grob html gtable_add_padding html gtable_add_rows html gtable_add_space html gtable_col html gtable_filter html gtable_height html gtable_matrix html gtable_row html gtable_show_layout html gtable_spacer html gtable_trim html gtable_width html is.gtable html print.gtable html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) Making 'packages.html' ... done * installing *source* package 'isoband' ... ** package 'isoband' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c clip-lines.cpp -o clip-lines.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c isoband.cpp -o isoband.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c polygon.cpp -o polygon.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c separate-polygons.cpp -o separate-polygons.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c test-clip-lines.cpp -o test-clip-lines.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Itestthat -I/usr/local/include -fpic -g -O2 -c test-separate-polygons.cpp -o test-separate-polygons.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'isoband' finding HTML links ... done angle_halfcircle_bottom html clip_lines html iso_to_sfg html isoband-package html isobands html isobands_grob html isolines_grob html label_placer html label_placer_simple html plot_iso html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) Making 'packages.html' ... done * installing *source* package 'shape' ... ** package 'shape' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shape' finding HTML links ... done A4 html Arrowhead html Arrows html colorlegend html cylindersegment html drapecol html emptyplot html femmecol html filledcircle html filledcylinder html filledellipse html filledmultigonal html filledrectangle html filledshape html getellipse html greycol html intpalette html plotcircle html plotellipse html rotatexy html roundrect html shadepalette html shape html textflag html writelabel html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shape) Making 'packages.html' ... done * installing *source* package 'data.table' ... ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation gcc 8.4.1 zlib 1.2.11 is available ok R CMD SHLIB supports OpenMP without any extra hint ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c assign.c -o assign.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c between.c -o between.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c bmerge.c -o bmerge.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c chmatch.c -o chmatch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c cj.c -o cj.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c coalesce.c -o coalesce.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c dogroups.c -o dogroups.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fastmean.c -o fastmean.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fcast.c -o fcast.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fifelse.c -o fifelse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fmelt.c -o fmelt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c forder.c -o forder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c frank.c -o frank.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fread.c -o fread.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c freadR.c -o freadR.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c froll.c -o froll.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c frollR.c -o frollR.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c frolladaptive.c -o frolladaptive.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fsort.c -o fsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fwrite.c -o fwrite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c fwriteR.c -o fwriteR.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c gsumm.c -o gsumm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c ijoin.c -o ijoin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c inrange.c -o inrange.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c nafill.c -o nafill.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c nqrecreateindices.c -o nqrecreateindices.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c openmp-utils.c -o openmp-utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c quickselect.c -o quickselect.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c rbindlist.c -o rbindlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c reorder.c -o reorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c shift.c -o shift.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c snprintf.c -o snprintf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c subset.c -o subset.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c transpose.c -o transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c types.c -o types.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c uniqlist.c -o uniqlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c vecseq.c -o vecseq.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c wrappers.c -o wrappers.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/opt/R/4.0.3/lib/R/lib -lR PKG_CFLAGS = -fopenmp PKG_LIBS = -fopenmp -lz if [ "data.table.so" != "datatable.so" ]; then mv data.table.so datatable.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi installing to /opt/R/4.0.3/lib/R/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'data.table' finding HTML links ... done IDateTime html J html address html all.equal.data.table html as.data.table html as.data.table.xts html as.matrix html as.xts.data.table html assign html between html cdt html chmatch html coalesce html copy html data.table-class html data.table html datatable-optimize html dcast.data.table html deprecated html duplicated html fcase html fifelse html foverlaps html frank html fread html froll html fsort html fwrite html groupingsets html last html last.updated html like html melt.data.table html merge html na.omit.data.table html nafill html openmp-utils html patterns html print.data.table html rbindlist html rleid html rowid html setDF html setDT html setNumericRounding html setattr html setcolorder html setkey html setops html setorder html shift html shouldPrint html special-symbols html split html subset.data.table html tables html test html test.data.table html timetaken html transform.data.table html transpose html truelength html tstrsplit html update.dev.pkg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Making 'packages.html' ... done * installing *source* package 'base64enc' ... ** package 'base64enc' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'base64enc' finding HTML links ... done base64 html checkUTF8 html dataURI html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) Making 'packages.html' ... done * installing *source* package 'evaluate' ... ** package 'evaluate' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'evaluate' finding HTML links ... done create_traceback html Rd warning: /tmp/RtmpRTxmLm/R.INSTALL6550193667a3/evaluate/man/create_traceback.Rd:11: file link 'sys.calls' in package 'base' does not exist and so has been treated as a topic evaluate html flush_console html inject_funs html is.message html line_prompt html new_output_handler html parse_all html remove_hooks html replay html set_hooks html try_capture_stack html watchout html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evaluate) Making 'packages.html' ... done * installing *source* package 'xfun' ... ** package 'xfun' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xfun' finding HTML links ... done Rscript html Rscript_call html attr html base64_encode html base64_uri html bg_process html bump_version html cache_rds html del_empty_dir html dir_create html dir_exists html do_once html download_file html embed_file html exit_call html file_ext html file_string html from_root html github_releases html grep_sub html gsub_file html in_dir html install_dir html install_github html isFALSE html is_R_CMD_check html is_abs_path html is_ascii html is_sub_path html is_web_path html magic_path html mark_dirs html msg_cat html native_encode html normalize_path html numbers_to_words html optipng html os html parse_only html pkg_attach html proc_kill html process_file html proj_root html prose_index html protect_math html raw_string html read_bin html read_utf8 html relative_path html rename_seq html retry html rev_check html rstudio_type html same_path html session_info html set_envvar html split_lines html split_source html strict_list html stringsAsStrings html tojson html tree html try_silent html upload_ftp html url_filename html valid_syntax html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) Making 'packages.html' ... done * installing *source* package 'FNN' ... ** package 'FNN' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c ANN.cpp -o ANN.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c KNN_ANN.cpp -o KNN_ANN.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c KNN_cover_test.cpp -o KNN_cover_test.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c KNN_cover_tree.cpp -o KNN_cover_tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c KNN_mutual_information.cpp -o KNN_mutual_information.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c bd_pr_search.cpp -o bd_pr_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c bd_search.cpp -o bd_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c bd_tree.cpp -o bd_tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c brute.cpp -o brute.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c init_FNN.c -o init_FNN.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_dump.cpp -o kd_dump.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_pr_search.cpp -o kd_pr_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_search.cpp -o kd_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_split.cpp -o kd_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_tree.cpp -o kd_tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c kd_util.cpp -o kd_util.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c label_point.cpp -o label_point.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -fpic -g -O2 -c perf.cpp -o perf.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o FNN.so ANN.o KNN_ANN.o KNN_correlation_distance.o KNN_cover_test.o KNN_cover_tree.o KNN_mutual_information.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init_FNN.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o label_point.o perf.o -L/opt/R/4.0.3/lib/R/lib -lR rm -f *.o core installing to /opt/R/4.0.3/lib/R/library/00LOCK-FNN/00new/FNN/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'FNN' finding HTML links ... done KL.dist html KL.divergence html crossentropy html entropy html get.knn html knn html knn.cv html knn.dist html knn.index html knn.reg html mutual_information html ownn html print.knnRegCV html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FNN) Making 'packages.html' ... done * installing *source* package 'kernlab' ... ** package 'kernlab' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brweight.cpp -o brweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ctable.cpp -o ctable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cweight.cpp -o cweight.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dbreakpt.c -o dbreakpt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dcauchy.c -o dcauchy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dgpnrm.c -o dgpnrm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dgpstep.c -o dgpstep.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dprecond.c -o dprecond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dprsrch.c -o dprsrch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dspcg.c -o dspcg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtron.c -o dtron.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtrpcg.c -o dtrpcg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtrqsol.c -o dtrqsol.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c esa.cpp -o esa.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expdecayweight.cpp -o expdecayweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c inductionsort.cpp -o inductionsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c kspectrumweight.cpp -o kspectrumweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lcp.cpp -o lcp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c misc.c -o misc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c msufsort.cpp -o msufsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c solvebqp.c -o solvebqp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stringk.c -o stringk.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stringkernel.cpp -o stringkernel.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c svm.cpp -o svm.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wkasailcp.cpp -o wkasailcp.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wmsufsort.cpp -o wmsufsort.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-kernlab/00new/kernlab/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'kernlab' finding HTML links ... done as.kernelMatrix html couple html csi-class html csi html dots html gausspr-class html gausspr html inchol-class html inchol html income html inlearn html ipop-class html ipop html kcca-class html kcca html kernel-class html kernelMatrix html kfa-class html kfa html kha-class html kha html kkmeans html kmmd-class html kmmd html kpca-class html kpca html kqr-class html kqr html ksvm-class html ksvm html lssvm-class html lssvm html musk html onlearn-class html onlearn html plot html prc-class html predict.gausspr html predict.kqr html predict.ksvm html promotergene html ranking-class html ranking html reuters html rvm-class html rvm html sigest html spam html specc-class html specc html spirals html stringdot html ticdata html vm-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernlab) Making 'packages.html' ... done * installing *source* package 'pbivnorm' ... ** package 'pbivnorm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c pbivnorm.f -o pbivnorm.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o pbivnorm.so pbivnorm.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-pbivnorm/00new/pbivnorm/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pbivnorm' finding HTML links ... done pbivnorm html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbivnorm) Making 'packages.html' ... done * installing *source* package 'nloptr' ... ** package 'nloptr' successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether we are using the GNU C++ compiler... 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GNU checking dependency style of gcc... gcc3 checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no ./configure: line 7406: /usr/bin/file: No such file or directory checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking dependency style of g++ -std=gnu++11... gcc3 checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ -std=gnu++11 linker (/usr/bin/ld) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fPIC -DPIC checking if g++ -std=gnu++11 PIC flag -fPIC -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... no checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for stdint.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for C thread-local keyword... __thread checking size of unsigned int... 4 checking size of unsigned long... 8 checking for uint32_t... yes checking for sin in -lm... yes checking for BSDgettimeofday... no checking for gettimeofday... yes checking for time... yes checking for qsort_r... yes checking for getpid... yes checking for gettid syscall... yes checking for isnan... yes checking for isinf... yes checking for copysign... yes checking for mkoctfile... no checking for mex... no checking for working HUGE_VAL... ok checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating nlopt.pc config.status: creating api/Makefile config.status: creating util/Makefile config.status: creating octave/Makefile config.status: creating direct/Makefile config.status: creating cdirect/Makefile config.status: creating stogo/Makefile config.status: creating praxis/Makefile config.status: creating luksan/Makefile config.status: creating crs/Makefile config.status: creating mlsl/Makefile config.status: creating mma/Makefile config.status: creating cobyla/Makefile config.status: creating newuoa/Makefile config.status: creating neldermead/Makefile config.status: creating auglag/Makefile config.status: creating bobyqa/Makefile config.status: creating isres/Makefile config.status: creating slsqp/Makefile config.status: creating esch/Makefile config.status: creating test/Makefile config.status: creating swig/Makefile config.status: creating swig/nlopt.scm config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make all-recursive make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' Making all in util make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c -o mt19937ar.lo mt19937ar.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT mt19937ar.lo -MD -MP -MF .deps/mt19937ar.Tpo -c mt19937ar.c -o mt19937ar.o >/dev/null 2>&1 mv -f .deps/mt19937ar.Tpo .deps/mt19937ar.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT sobolseq.lo -MD -MP -MF .deps/sobolseq.Tpo -c -o sobolseq.lo sobolseq.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT sobolseq.lo -MD -MP -MF .deps/sobolseq.Tpo -c sobolseq.c -fPIC -DPIC -o .libs/sobolseq.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT sobolseq.lo -MD -MP -MF .deps/sobolseq.Tpo -c sobolseq.c -o sobolseq.o >/dev/null 2>&1 mv -f .deps/sobolseq.Tpo .deps/sobolseq.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c -o timer.lo timer.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c timer.c -fPIC -DPIC -o .libs/timer.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT timer.lo -MD -MP -MF .deps/timer.Tpo -c timer.c -o timer.o >/dev/null 2>&1 mv -f .deps/timer.Tpo .deps/timer.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT stop.lo -MD -MP -MF .deps/stop.Tpo -c -o stop.lo stop.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT stop.lo -MD -MP -MF .deps/stop.Tpo -c stop.c -fPIC -DPIC -o .libs/stop.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT stop.lo -MD -MP -MF .deps/stop.Tpo -c stop.c -o stop.o >/dev/null 2>&1 mv -f .deps/stop.Tpo .deps/stop.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT redblack.lo -MD -MP -MF .deps/redblack.Tpo -c -o redblack.lo redblack.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT redblack.lo -MD -MP -MF .deps/redblack.Tpo -c redblack.c -fPIC -DPIC -o .libs/redblack.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT redblack.lo -MD -MP -MF .deps/redblack.Tpo -c redblack.c -o redblack.o >/dev/null 2>&1 mv -f .deps/redblack.Tpo .deps/redblack.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT qsort_r.lo -MD -MP -MF .deps/qsort_r.Tpo -c -o qsort_r.lo qsort_r.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT qsort_r.lo -MD -MP -MF .deps/qsort_r.Tpo -c qsort_r.c -fPIC -DPIC -o .libs/qsort_r.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT qsort_r.lo -MD -MP -MF .deps/qsort_r.Tpo -c qsort_r.c -o qsort_r.o >/dev/null 2>&1 mv -f .deps/qsort_r.Tpo .deps/qsort_r.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT rescale.lo -MD -MP -MF .deps/rescale.Tpo -c -o rescale.lo rescale.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT rescale.lo -MD -MP -MF .deps/rescale.Tpo -c rescale.c -fPIC -DPIC -o .libs/rescale.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT rescale.lo -MD -MP -MF .deps/rescale.Tpo -c rescale.c -o rescale.o >/dev/null 2>&1 mv -f .deps/rescale.Tpo .deps/rescale.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libutil.la mt19937ar.lo sobolseq.lo timer.lo stop.lo redblack.lo qsort_r.lo rescale.lo -lm libtool: link: ar cru .libs/libutil.a .libs/mt19937ar.o .libs/sobolseq.o .libs/timer.o .libs/stop.o .libs/redblack.o .libs/qsort_r.o .libs/rescale.o libtool: link: ranlib .libs/libutil.a libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" ) g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -g -O2 -MT redblack_test.o -MD -MP -MF .deps/redblack_test.Tpo -c -o redblack_test.o redblack_test.c mv -f .deps/redblack_test.Tpo .deps/redblack_test.Po /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o redblack_test redblack_test.o libutil.la -lm libtool: link: g++ -std=gnu++11 -g -O2 -o redblack_test redblack_test.o ./.libs/libutil.a -lm make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' Making all in direct make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRect.lo -MD -MP -MF .deps/DIRect.Tpo -c -o DIRect.lo DIRect.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRect.lo -MD -MP -MF .deps/DIRect.Tpo -c DIRect.c -fPIC -DPIC -o .libs/DIRect.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRect.lo -MD -MP -MF .deps/DIRect.Tpo -c DIRect.c -o DIRect.o >/dev/null 2>&1 mv -f .deps/DIRect.Tpo .deps/DIRect.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT direct_wrap.lo -MD -MP -MF .deps/direct_wrap.Tpo -c -o direct_wrap.lo direct_wrap.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT direct_wrap.lo -MD -MP -MF .deps/direct_wrap.Tpo -c direct_wrap.c -fPIC -DPIC -o .libs/direct_wrap.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT direct_wrap.lo -MD -MP -MF .deps/direct_wrap.Tpo -c direct_wrap.c -o direct_wrap.o >/dev/null 2>&1 mv -f .deps/direct_wrap.Tpo .deps/direct_wrap.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRserial.lo -MD -MP -MF .deps/DIRserial.Tpo -c -o DIRserial.lo DIRserial.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRserial.lo -MD -MP -MF .deps/DIRserial.Tpo -c DIRserial.c -fPIC -DPIC -o .libs/DIRserial.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRserial.lo -MD -MP -MF .deps/DIRserial.Tpo -c DIRserial.c -o DIRserial.o >/dev/null 2>&1 mv -f .deps/DIRserial.Tpo .deps/DIRserial.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRsubrout.lo -MD -MP -MF .deps/DIRsubrout.Tpo -c -o DIRsubrout.lo DIRsubrout.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRsubrout.lo -MD -MP -MF .deps/DIRsubrout.Tpo -c DIRsubrout.c -fPIC -DPIC -o .libs/DIRsubrout.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT DIRsubrout.lo -MD -MP -MF .deps/DIRsubrout.Tpo -c DIRsubrout.c -o DIRsubrout.o >/dev/null 2>&1 mv -f .deps/DIRsubrout.Tpo .deps/DIRsubrout.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libdirect.la DIRect.lo direct_wrap.lo DIRserial.lo DIRsubrout.lo -lm libtool: link: ar cru .libs/libdirect.a .libs/DIRect.o .libs/direct_wrap.o .libs/DIRserial.o .libs/DIRsubrout.o libtool: link: ranlib .libs/libdirect.a libtool: link: ( cd ".libs" && rm -f "libdirect.la" && ln -s "../libdirect.la" "libdirect.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' Making all in cdirect make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cdirect.lo -MD -MP -MF .deps/cdirect.Tpo -c -o cdirect.lo cdirect.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cdirect.lo -MD -MP -MF .deps/cdirect.Tpo -c cdirect.c -fPIC -DPIC -o .libs/cdirect.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cdirect.lo -MD -MP -MF .deps/cdirect.Tpo -c cdirect.c -o cdirect.o >/dev/null 2>&1 mv -f .deps/cdirect.Tpo .deps/cdirect.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c -o hybrid.lo hybrid.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c hybrid.c -fPIC -DPIC -o .libs/hybrid.o hybrid.c: In function 'nlopt_result optimize_rect(double*, params*)': hybrid.c:99:39: warning: 'nlopt_result nlopt_minimize(nlopt_algorithm, int, nlopt_func_old, void*, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] stop->maxtime - (t - stop->start)); ^ In file included from ../util/nlopt-util.h:30, from hybrid.c:27: ../api/nlopt.h:329:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize( ^~~~~~~~~~~~~~ hybrid.c:99:39: warning: 'nlopt_result nlopt_minimize(nlopt_algorithm, int, nlopt_func_old, void*, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] stop->maxtime - (t - stop->start)); ^ In file included from ../util/nlopt-util.h:30, from hybrid.c:27: ../api/nlopt.h:329:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize( ^~~~~~~~~~~~~~ libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c hybrid.c -o hybrid.o >/dev/null 2>&1 mv -f .deps/hybrid.Tpo .deps/hybrid.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libcdirect.la cdirect.lo hybrid.lo -lm libtool: link: ar cru .libs/libcdirect.a .libs/cdirect.o .libs/hybrid.o libtool: link: ranlib .libs/libcdirect.a libtool: link: ( cd ".libs" && rm -f "libcdirect.la" && ln -s "../libcdirect.la" "libcdirect.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' Making all in stogo make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' /bin/sh ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT global.lo -MD -MP -MF .deps/global.Tpo -c -o global.lo global.cc libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT global.lo -MD -MP -MF .deps/global.Tpo -c global.cc -fPIC -DPIC -o .libs/global.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT global.lo -MD -MP -MF .deps/global.Tpo -c global.cc -o global.o >/dev/null 2>&1 mv -f .deps/global.Tpo .deps/global.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT linalg.lo -MD -MP -MF .deps/linalg.Tpo -c -o linalg.lo linalg.cc libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT linalg.lo -MD -MP -MF .deps/linalg.Tpo -c linalg.cc -fPIC -DPIC -o .libs/linalg.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT linalg.lo -MD -MP -MF .deps/linalg.Tpo -c linalg.cc -o linalg.o >/dev/null 2>&1 mv -f .deps/linalg.Tpo .deps/linalg.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT local.lo -MD -MP -MF .deps/local.Tpo -c -o local.lo local.cc libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT local.lo -MD -MP -MF .deps/local.Tpo -c local.cc -fPIC -DPIC -o .libs/local.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT local.lo -MD -MP -MF .deps/local.Tpo -c local.cc -o local.o >/dev/null 2>&1 mv -f .deps/local.Tpo .deps/local.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT stogo.lo -MD -MP -MF .deps/stogo.Tpo -c -o stogo.lo stogo.cc libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT stogo.lo -MD -MP -MF .deps/stogo.Tpo -c stogo.cc -fPIC -DPIC -o .libs/stogo.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT stogo.lo -MD -MP -MF .deps/stogo.Tpo -c stogo.cc -o stogo.o >/dev/null 2>&1 mv -f .deps/stogo.Tpo .deps/stogo.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT tools.lo -MD -MP -MF .deps/tools.Tpo -c -o tools.lo tools.cc libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT tools.lo -MD -MP -MF .deps/tools.Tpo -c tools.cc -fPIC -DPIC -o .libs/tools.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT tools.lo -MD -MP -MF .deps/tools.Tpo -c tools.cc -o tools.o >/dev/null 2>&1 mv -f .deps/tools.Tpo .deps/tools.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -O2 -o libstogo.la global.lo linalg.lo local.lo stogo.lo tools.lo -lm libtool: link: ar cru .libs/libstogo.a .libs/global.o .libs/linalg.o .libs/local.o .libs/stogo.o .libs/tools.o libtool: link: ranlib .libs/libstogo.a libtool: link: ( cd ".libs" && rm -f "libstogo.la" && ln -s "../libstogo.la" "libstogo.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' Making all in praxis make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT praxis.lo -MD -MP -MF .deps/praxis.Tpo -c -o praxis.lo praxis.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT praxis.lo -MD -MP -MF .deps/praxis.Tpo -c praxis.c -fPIC -DPIC -o .libs/praxis.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT praxis.lo -MD -MP -MF .deps/praxis.Tpo -c praxis.c -o praxis.o >/dev/null 2>&1 mv -f .deps/praxis.Tpo .deps/praxis.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libpraxis.la praxis.lo -lm libtool: link: ar cru .libs/libpraxis.a .libs/praxis.o libtool: link: ranlib .libs/libpraxis.a libtool: link: ( cd ".libs" && rm -f "libpraxis.la" && ln -s "../libpraxis.la" "libpraxis.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' Making all in luksan make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plis.lo -MD -MP -MF .deps/plis.Tpo -c -o plis.lo plis.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plis.lo -MD -MP -MF .deps/plis.Tpo -c plis.c -fPIC -DPIC -o .libs/plis.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plis.lo -MD -MP -MF .deps/plis.Tpo -c plis.c -o plis.o >/dev/null 2>&1 mv -f .deps/plis.Tpo .deps/plis.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plip.lo -MD -MP -MF .deps/plip.Tpo -c -o plip.lo plip.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plip.lo -MD -MP -MF .deps/plip.Tpo -c plip.c -fPIC -DPIC -o .libs/plip.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT plip.lo -MD -MP -MF .deps/plip.Tpo -c plip.c -o plip.o >/dev/null 2>&1 mv -f .deps/plip.Tpo .deps/plip.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pnet.lo -MD -MP -MF .deps/pnet.Tpo -c -o pnet.lo pnet.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pnet.lo -MD -MP -MF .deps/pnet.Tpo -c pnet.c -fPIC -DPIC -o .libs/pnet.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pnet.lo -MD -MP -MF .deps/pnet.Tpo -c pnet.c -o pnet.o >/dev/null 2>&1 mv -f .deps/pnet.Tpo .deps/pnet.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mssubs.lo -MD -MP -MF .deps/mssubs.Tpo -c -o mssubs.lo mssubs.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mssubs.lo -MD -MP -MF .deps/mssubs.Tpo -c mssubs.c -fPIC -DPIC -o .libs/mssubs.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mssubs.lo -MD -MP -MF .deps/mssubs.Tpo -c mssubs.c -o mssubs.o >/dev/null 2>&1 mv -f .deps/mssubs.Tpo .deps/mssubs.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pssubs.lo -MD -MP -MF .deps/pssubs.Tpo -c -o pssubs.lo pssubs.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pssubs.lo -MD -MP -MF .deps/pssubs.Tpo -c pssubs.c -fPIC -DPIC -o .libs/pssubs.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT pssubs.lo -MD -MP -MF .deps/pssubs.Tpo -c pssubs.c -o pssubs.o >/dev/null 2>&1 mv -f .deps/pssubs.Tpo .deps/pssubs.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libluksan.la plis.lo plip.lo pnet.lo mssubs.lo pssubs.lo -lm libtool: link: ar cru .libs/libluksan.a .libs/plis.o .libs/plip.o .libs/pnet.o .libs/mssubs.o .libs/pssubs.o libtool: link: ranlib .libs/libluksan.a libtool: link: ( cd ".libs" && rm -f "libluksan.la" && ln -s "../libluksan.la" "libluksan.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' Making all in crs make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT crs.lo -MD -MP -MF .deps/crs.Tpo -c -o crs.lo crs.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT crs.lo -MD -MP -MF .deps/crs.Tpo -c crs.c -fPIC -DPIC -o .libs/crs.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT crs.lo -MD -MP -MF .deps/crs.Tpo -c crs.c -o crs.o >/dev/null 2>&1 mv -f .deps/crs.Tpo .deps/crs.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libcrs.la crs.lo -lm libtool: link: ar cru .libs/libcrs.a .libs/crs.o libtool: link: ranlib .libs/libcrs.a libtool: link: ( cd ".libs" && rm -f "libcrs.la" && ln -s "../libcrs.la" "libcrs.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' Making all in mlsl make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mlsl.lo -MD -MP -MF .deps/mlsl.Tpo -c -o mlsl.lo mlsl.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mlsl.lo -MD -MP -MF .deps/mlsl.Tpo -c mlsl.c -fPIC -DPIC -o .libs/mlsl.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mlsl.lo -MD -MP -MF .deps/mlsl.Tpo -c mlsl.c -o mlsl.o >/dev/null 2>&1 mv -f .deps/mlsl.Tpo .deps/mlsl.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libmlsl.la mlsl.lo -lm libtool: link: ar cru .libs/libmlsl.a .libs/mlsl.o libtool: link: ranlib .libs/libmlsl.a libtool: link: ( cd ".libs" && rm -f "libmlsl.la" && ln -s "../libmlsl.la" "libmlsl.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' Making all in mma make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mma.lo -MD -MP -MF .deps/mma.Tpo -c -o mma.lo mma.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mma.lo -MD -MP -MF .deps/mma.Tpo -c mma.c -fPIC -DPIC -o .libs/mma.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT mma.lo -MD -MP -MF .deps/mma.Tpo -c mma.c -o mma.o >/dev/null 2>&1 mv -f .deps/mma.Tpo .deps/mma.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT ccsa_quadratic.lo -MD -MP -MF .deps/ccsa_quadratic.Tpo -c -o ccsa_quadratic.lo ccsa_quadratic.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT ccsa_quadratic.lo -MD -MP -MF .deps/ccsa_quadratic.Tpo -c ccsa_quadratic.c -fPIC -DPIC -o .libs/ccsa_quadratic.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT ccsa_quadratic.lo -MD -MP -MF .deps/ccsa_quadratic.Tpo -c ccsa_quadratic.c -o ccsa_quadratic.o >/dev/null 2>&1 mv -f .deps/ccsa_quadratic.Tpo .deps/ccsa_quadratic.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libmma.la mma.lo ccsa_quadratic.lo -lm libtool: link: ar cru .libs/libmma.a .libs/mma.o .libs/ccsa_quadratic.o libtool: link: ranlib .libs/libmma.a libtool: link: ( cd ".libs" && rm -f "libmma.la" && ln -s "../libmma.la" "libmma.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' Making all in cobyla make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cobyla.lo -MD -MP -MF .deps/cobyla.Tpo -c -o cobyla.lo cobyla.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cobyla.lo -MD -MP -MF .deps/cobyla.Tpo -c cobyla.c -fPIC -DPIC -o .libs/cobyla.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT cobyla.lo -MD -MP -MF .deps/cobyla.Tpo -c cobyla.c -o cobyla.o >/dev/null 2>&1 mv -f .deps/cobyla.Tpo .deps/cobyla.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libcobyla.la cobyla.lo -lm libtool: link: ar cru .libs/libcobyla.a .libs/cobyla.o libtool: link: ranlib .libs/libcobyla.a libtool: link: ( cd ".libs" && rm -f "libcobyla.la" && ln -s "../libcobyla.la" "libcobyla.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' Making all in newuoa make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT newuoa.lo -MD -MP -MF .deps/newuoa.Tpo -c -o newuoa.lo newuoa.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT newuoa.lo -MD -MP -MF .deps/newuoa.Tpo -c newuoa.c -fPIC -DPIC -o .libs/newuoa.o newuoa.c: In function 'nlopt_result trsapp_(int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const double*)': newuoa.c:187:35: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] 0., 0., 0., xtol, 1000, 0.); ^ In file included from ../util/nlopt-util.h:30, from newuoa.h:4, from newuoa.c:33: ../api/nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ newuoa.c:187:35: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] 0., 0., 0., xtol, 1000, 0.); ^ In file included from ../util/nlopt-util.h:30, from newuoa.h:4, from newuoa.c:33: ../api/nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ newuoa.c: In function 'nlopt_result biglag_(int*, int*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const double*)': newuoa.c:1244:35: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] 0., 0., 0., xtol, 1000, 0.); ^ In file included from ../util/nlopt-util.h:30, from newuoa.h:4, from newuoa.c:33: ../api/nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ newuoa.c:1244:35: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] 0., 0., 0., xtol, 1000, 0.); ^ In file included from ../util/nlopt-util.h:30, from newuoa.h:4, from newuoa.c:33: ../api/nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT newuoa.lo -MD -MP -MF .deps/newuoa.Tpo -c newuoa.c -o newuoa.o >/dev/null 2>&1 mv -f .deps/newuoa.Tpo .deps/newuoa.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libnewuoa.la newuoa.lo -lm libtool: link: ar cru .libs/libnewuoa.a .libs/newuoa.o libtool: link: ranlib .libs/libnewuoa.a libtool: link: ( cd ".libs" && rm -f "libnewuoa.la" && ln -s "../libnewuoa.la" "libnewuoa.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' Making all in neldermead make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT nldrmd.lo -MD -MP -MF .deps/nldrmd.Tpo -c -o nldrmd.lo nldrmd.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT nldrmd.lo -MD -MP -MF .deps/nldrmd.Tpo -c nldrmd.c -fPIC -DPIC -o .libs/nldrmd.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT nldrmd.lo -MD -MP -MF .deps/nldrmd.Tpo -c nldrmd.c -o nldrmd.o >/dev/null 2>&1 mv -f .deps/nldrmd.Tpo .deps/nldrmd.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT sbplx.lo -MD -MP -MF .deps/sbplx.Tpo -c -o sbplx.lo sbplx.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT sbplx.lo -MD -MP -MF .deps/sbplx.Tpo -c sbplx.c -fPIC -DPIC -o .libs/sbplx.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT sbplx.lo -MD -MP -MF .deps/sbplx.Tpo -c sbplx.c -o sbplx.o >/dev/null 2>&1 mv -f .deps/sbplx.Tpo .deps/sbplx.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libneldermead.la nldrmd.lo sbplx.lo -lm libtool: link: ar cru .libs/libneldermead.a .libs/nldrmd.o .libs/sbplx.o libtool: link: ranlib .libs/libneldermead.a libtool: link: ( cd ".libs" && rm -f "libneldermead.la" && ln -s "../libneldermead.la" "libneldermead.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' Making all in auglag make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT auglag.lo -MD -MP -MF .deps/auglag.Tpo -c -o auglag.lo auglag.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT auglag.lo -MD -MP -MF .deps/auglag.Tpo -c auglag.c -fPIC -DPIC -o .libs/auglag.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT auglag.lo -MD -MP -MF .deps/auglag.Tpo -c auglag.c -o auglag.o >/dev/null 2>&1 mv -f .deps/auglag.Tpo .deps/auglag.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libauglag.la auglag.lo -lm libtool: link: ar cru .libs/libauglag.a .libs/auglag.o libtool: link: ranlib .libs/libauglag.a libtool: link: ( cd ".libs" && rm -f "libauglag.la" && ln -s "../libauglag.la" "libauglag.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' Making all in bobyqa make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT bobyqa.lo -MD -MP -MF .deps/bobyqa.Tpo -c -o bobyqa.lo bobyqa.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT bobyqa.lo -MD -MP -MF .deps/bobyqa.Tpo -c bobyqa.c -fPIC -DPIC -o .libs/bobyqa.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT bobyqa.lo -MD -MP -MF .deps/bobyqa.Tpo -c bobyqa.c -o bobyqa.o >/dev/null 2>&1 mv -f .deps/bobyqa.Tpo .deps/bobyqa.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libbobyqa.la bobyqa.lo -lm libtool: link: ar cru .libs/libbobyqa.a .libs/bobyqa.o libtool: link: ranlib .libs/libbobyqa.a libtool: link: ( cd ".libs" && rm -f "libbobyqa.la" && ln -s "../libbobyqa.la" "libbobyqa.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' Making all in isres make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT isres.lo -MD -MP -MF .deps/isres.Tpo -c -o isres.lo isres.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT isres.lo -MD -MP -MF .deps/isres.Tpo -c isres.c -fPIC -DPIC -o .libs/isres.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT isres.lo -MD -MP -MF .deps/isres.Tpo -c isres.c -o isres.o >/dev/null 2>&1 mv -f .deps/isres.Tpo .deps/isres.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libisres.la isres.lo -lm libtool: link: ar cru .libs/libisres.a .libs/isres.o libtool: link: ranlib .libs/libisres.a libtool: link: ( cd ".libs" && rm -f "libisres.la" && ln -s "../libisres.la" "libisres.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' Making all in slsqp make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT slsqp.lo -MD -MP -MF .deps/slsqp.Tpo -c -o slsqp.lo slsqp.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT slsqp.lo -MD -MP -MF .deps/slsqp.Tpo -c slsqp.c -fPIC -DPIC -o .libs/slsqp.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT slsqp.lo -MD -MP -MF .deps/slsqp.Tpo -c slsqp.c -o slsqp.o >/dev/null 2>&1 mv -f .deps/slsqp.Tpo .deps/slsqp.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libslsqp.la slsqp.lo -lm libtool: link: ar cru .libs/libslsqp.a .libs/slsqp.o libtool: link: ranlib .libs/libslsqp.a libtool: link: ( cd ".libs" && rm -f "libslsqp.la" && ln -s "../libslsqp.la" "libslsqp.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' Making all in esch make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT esch.lo -MD -MP -MF .deps/esch.Tpo -c -o esch.lo esch.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT esch.lo -MD -MP -MF .deps/esch.Tpo -c esch.c -fPIC -DPIC -o .libs/esch.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../util -I../api -g -O2 -MT esch.lo -MD -MP -MF .deps/esch.Tpo -c esch.c -o esch.o >/dev/null 2>&1 mv -f .deps/esch.Tpo .deps/esch.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libesch.la esch.lo -lm libtool: link: ar cru .libs/libesch.a .libs/esch.o libtool: link: ranlib .libs/libesch.a libtool: link: ( cd ".libs" && rm -f "libesch.la" && ln -s "../libesch.la" "libesch.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' Making all in api make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make all-am make[3]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT general.lo -MD -MP -MF .deps/general.Tpo -c -o general.lo general.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT general.lo -MD -MP -MF .deps/general.Tpo -c general.c -fPIC -DPIC -o .libs/general.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT general.lo -MD -MP -MF .deps/general.Tpo -c general.c -o general.o >/dev/null 2>&1 mv -f .deps/general.Tpo .deps/general.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT options.lo -MD -MP -MF .deps/options.Tpo -c -o options.lo options.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT options.lo -MD -MP -MF .deps/options.Tpo -c options.c -fPIC -DPIC -o .libs/options.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT options.lo -MD -MP -MF .deps/options.Tpo -c options.c -o options.o >/dev/null 2>&1 mv -f .deps/options.Tpo .deps/options.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT optimize.lo -MD -MP -MF .deps/optimize.Tpo -c -o optimize.lo optimize.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT optimize.lo -MD -MP -MF .deps/optimize.Tpo -c optimize.c -fPIC -DPIC -o .libs/optimize.o libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT optimize.lo -MD -MP -MF .deps/optimize.Tpo -c optimize.c -o optimize.o >/dev/null 2>&1 mv -f .deps/optimize.Tpo .deps/optimize.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT deprecated.lo -MD -MP -MF .deps/deprecated.Tpo -c -o deprecated.lo deprecated.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT deprecated.lo -MD -MP -MF .deps/deprecated.Tpo -c deprecated.c -fPIC -DPIC -o .libs/deprecated.o deprecated.c: In function 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)': deprecated.c:153:60: warning: 'nlopt_result nlopt_minimize_econstrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, double, double, int, double)' is deprecated [-Wdeprecated-declarations] xtol_rel, xtol_abs, ftol_rel, ftol_abs, maxeval, maxtime); ^ deprecated.c:65:15: note: declared here NLOPT_STDCALL nlopt_minimize_econstrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~~ deprecated.c:153:60: warning: 'nlopt_result nlopt_minimize_econstrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, double, double, int, double)' is deprecated [-Wdeprecated-declarations] xtol_rel, xtol_abs, ftol_rel, ftol_abs, maxeval, maxtime); ^ deprecated.c:65:15: note: declared here NLOPT_STDCALL nlopt_minimize_econstrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~~ deprecated.c: In function 'nlopt_result nlopt_minimize(nlopt_algorithm, int, nlopt_func_old, void*, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)': deprecated.c:170:40: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] xtol_rel, xtol_abs, maxeval, maxtime); ^ deprecated.c:138:15: note: declared here NLOPT_STDCALL nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ deprecated.c:170:40: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] xtol_rel, xtol_abs, maxeval, maxtime); ^ deprecated.c:138:15: note: declared here NLOPT_STDCALL nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT deprecated.lo -MD -MP -MF .deps/deprecated.Tpo -c deprecated.c -o deprecated.o >/dev/null 2>&1 mv -f .deps/deprecated.Tpo .deps/deprecated.Plo /bin/sh ../libtool --tag=CC --mode=compile g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT f77api.lo -MD -MP -MF .deps/f77api.Tpo -c -o f77api.lo f77api.c libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT f77api.lo -MD -MP -MF .deps/f77api.Tpo -c f77api.c -fPIC -DPIC -o .libs/f77api.o In file included from f77api.c:103: f77funcs.h: In function 'void nloptc_(int*, const int*, const int*, nlopt_f77_func, void*, const int*, nlopt_f77_func, char*, char*, const double*, const double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*)': f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h: In function 'void nlogls_(int*, int*, int*)': f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h: In function 'void nlosls_(int*, int*, int*)': f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h: In function 'void nlogsp_(int*)': f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h: In function 'void nlossp_(const int*)': f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:103: f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h: In function 'void nloptc(int*, const int*, const int*, nlopt_f77_func, void*, const int*, nlopt_f77_func, char*, char*, const double*, const double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*)': f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h: In function 'void nlogls(int*, int*, int*)': f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h: In function 'void nlosls(int*, int*, int*)': f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h: In function 'void nlogsp(int*)': f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h: In function 'void nlossp(const int*)': f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:114: f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h: In function 'void NLOPTC(int*, const int*, const int*, nlopt_f77_func, void*, const int*, nlopt_f77_func, char*, char*, const double*, const double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*)': f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h:65:24: warning: 'nlopt_result nlopt_minimize_constrained(nlopt_algorithm, int, nlopt_func_old, void*, int, nlopt_func_old, void*, ptrdiff_t, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] *maxeval, *maxtime); ^ In file included from f77api.c:26: nlopt.h:339:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize_constrained( ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h: In function 'void NLOGLS(int*, int*, int*)': f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h:96:65: warning: 'void nlopt_get_local_search_algorithm(nlopt_algorithm*, nlopt_algorithm*, int*)' is deprecated [-Wdeprecated-declarations] nlopt_get_local_search_algorithm(&deriv, &nonderiv, maxeval); ^ In file included from f77api.c:26: nlopt.h:363:20: note: declared here NLOPT_EXTERN(void) nlopt_get_local_search_algorithm(nlopt_algorithm *deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h: In function 'void NLOSLS(int*, int*, int*)': f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h:104:64: warning: 'void nlopt_set_local_search_algorithm(nlopt_algorithm, nlopt_algorithm, int)' is deprecated [-Wdeprecated-declarations] nlopt_set_local_search_algorithm(deriv, nonderiv, *maxeval); ^ In file included from f77api.c:26: nlopt.h:366:20: note: declared here NLOPT_EXTERN(void) nlopt_set_local_search_algorithm(nlopt_algorithm deriv, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h: In function 'void NLOGSP(int*)': f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h:109:45: warning: 'int nlopt_get_stochastic_population()' is deprecated [-Wdeprecated-declarations] *pop = nlopt_get_stochastic_population(); ^ In file included from f77api.c:26: nlopt.h:370:19: note: declared here NLOPT_EXTERN(int) nlopt_get_stochastic_population(void) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h: In function 'void NLOSSP(const int*)': f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from f77api.c:129: f77funcs.h:113:42: warning: 'void nlopt_set_stochastic_population(int)' is deprecated [-Wdeprecated-declarations] nlopt_set_stochastic_population(*pop); ^ In file included from f77api.c:26: nlopt.h:371:20: note: declared here NLOPT_EXTERN(void) nlopt_set_stochastic_population(int pop) NLOPT_DEPRECATED; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../cdirect -I../direct -I../stogo -I../praxis -I../lbfgs -I../luksan -I../crs -I../mlsl -I../mma -I../cobyla -I../newuoa -I../neldermead -I../auglag -I../bobyqa -I../isres -I../slsqp -I../esch -I../util -g -O2 -MT f77api.lo -MD -MP -MF .deps/f77api.Tpo -c f77api.c -o f77api.o >/dev/null 2>&1 mv -f .deps/f77api.Tpo .deps/f77api.Plo /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o libapi.la general.lo options.lo optimize.lo deprecated.lo f77api.lo -lm libtool: link: ar cru .libs/libapi.a .libs/general.o .libs/options.o .libs/optimize.o .libs/deprecated.o .libs/f77api.o libtool: link: ranlib .libs/libapi.a libtool: link: ( cd ".libs" && rm -f "libapi.la" && ln -s "../libapi.la" "libapi.la" ) make[3]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' Making all in . make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' /bin/sh ./libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -version-info 8:2:8 -o libnlopt_cxx.la -rpath /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib direct/libdirect.la cdirect/libcdirect.la stogo/libstogo.la praxis/libpraxis.la luksan/libluksan.la crs/libcrs.la mlsl/libmlsl.la mma/libmma.la cobyla/libcobyla.la newuoa/libnewuoa.la neldermead/libneldermead.la auglag/libauglag.la bobyqa/libbobyqa.la isres/libisres.la slsqp/libslsqp.la esch/libesch.la api/libapi.la util/libutil.la -lm libtool: link: gcc -shared -fPIC -DPIC -Wl,--whole-archive direct/.libs/libdirect.a cdirect/.libs/libcdirect.a stogo/.libs/libstogo.a praxis/.libs/libpraxis.a luksan/.libs/libluksan.a crs/.libs/libcrs.a mlsl/.libs/libmlsl.a mma/.libs/libmma.a cobyla/.libs/libcobyla.a newuoa/.libs/libnewuoa.a neldermead/.libs/libneldermead.a auglag/.libs/libauglag.a bobyqa/.libs/libbobyqa.a isres/.libs/libisres.a slsqp/.libs/libslsqp.a esch/.libs/libesch.a api/.libs/libapi.a util/.libs/libutil.a -Wl,--no-whole-archive -lm -O2 -Wl,-soname -Wl,libnlopt_cxx.so.0 -o .libs/libnlopt_cxx.so.0.8.2 libtool: link: (cd ".libs" && rm -f "libnlopt_cxx.so.0" && ln -s "libnlopt_cxx.so.0.8.2" "libnlopt_cxx.so.0") libtool: link: (cd ".libs" && rm -f "libnlopt_cxx.so" && ln -s "libnlopt_cxx.so.0.8.2" "libnlopt_cxx.so") libtool: link: (cd .libs/libnlopt_cxx.lax/libdirect.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct/.libs/libdirect.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libcdirect.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect/.libs/libcdirect.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libstogo.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo/.libs/libstogo.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libpraxis.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis/.libs/libpraxis.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libluksan.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan/.libs/libluksan.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libcrs.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs/.libs/libcrs.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libmlsl.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl/.libs/libmlsl.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libmma.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma/.libs/libmma.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libcobyla.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla/.libs/libcobyla.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libnewuoa.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa/.libs/libnewuoa.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libneldermead.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead/.libs/libneldermead.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libauglag.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag/.libs/libauglag.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libbobyqa.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa/.libs/libbobyqa.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libisres.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres/.libs/libisres.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libslsqp.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp/.libs/libslsqp.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libesch.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch/.libs/libesch.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libapi.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api/.libs/libapi.a") libtool: link: (cd .libs/libnlopt_cxx.lax/libutil.a && ar x "/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util/.libs/libutil.a") libtool: link: ar cru .libs/libnlopt_cxx.a .libs/libnlopt_cxx.lax/libdirect.a/DIRect.o .libs/libnlopt_cxx.lax/libdirect.a/DIRserial.o .libs/libnlopt_cxx.lax/libdirect.a/DIRsubrout.o .libs/libnlopt_cxx.lax/libdirect.a/direct_wrap.o .libs/libnlopt_cxx.lax/libcdirect.a/cdirect.o .libs/libnlopt_cxx.lax/libcdirect.a/hybrid.o .libs/libnlopt_cxx.lax/libstogo.a/global.o .libs/libnlopt_cxx.lax/libstogo.a/linalg.o .libs/libnlopt_cxx.lax/libstogo.a/local.o .libs/libnlopt_cxx.lax/libstogo.a/stogo.o .libs/libnlopt_cxx.lax/libstogo.a/tools.o .libs/libnlopt_cxx.lax/libpraxis.a/praxis.o .libs/libnlopt_cxx.lax/libluksan.a/mssubs.o .libs/libnlopt_cxx.lax/libluksan.a/plip.o .libs/libnlopt_cxx.lax/libluksan.a/plis.o .libs/libnlopt_cxx.lax/libluksan.a/pnet.o .libs/libnlopt_cxx.lax/libluksan.a/pssubs.o .libs/libnlopt_cxx.lax/libcrs.a/crs.o .libs/libnlopt_cxx.lax/libmlsl.a/mlsl.o .libs/libnlopt_cxx.lax/libmma.a/ccsa_quadratic.o .libs/libnlopt_cxx.lax/libmma.a/mma.o .libs/libnlopt_cxx.lax/libcobyla.a/cobyla.o .libs/libnlopt_cxx.lax/libnewuoa.a/newuoa.o .libs/libnlopt_cxx.lax/libneldermead.a/nldrmd.o .libs/libnlopt_cxx.lax/libneldermead.a/sbplx.o .libs/libnlopt_cxx.lax/libauglag.a/auglag.o .libs/libnlopt_cxx.lax/libbobyqa.a/bobyqa.o .libs/libnlopt_cxx.lax/libisres.a/isres.o .libs/libnlopt_cxx.lax/libslsqp.a/slsqp.o .libs/libnlopt_cxx.lax/libesch.a/esch.o .libs/libnlopt_cxx.lax/libapi.a/deprecated.o .libs/libnlopt_cxx.lax/libapi.a/f77api.o .libs/libnlopt_cxx.lax/libapi.a/general.o .libs/libnlopt_cxx.lax/libapi.a/optimize.o .libs/libnlopt_cxx.lax/libapi.a/options.o .libs/libnlopt_cxx.lax/libutil.a/mt19937ar.o .libs/libnlopt_cxx.lax/libutil.a/qsort_r.o .libs/libnlopt_cxx.lax/libutil.a/redblack.o .libs/libnlopt_cxx.lax/libutil.a/rescale.o .libs/libnlopt_cxx.lax/libutil.a/sobolseq.o .libs/libnlopt_cxx.lax/libutil.a/stop.o .libs/libnlopt_cxx.lax/libutil.a/timer.o libtool: link: ranlib .libs/libnlopt_cxx.a libtool: link: rm -fr .libs/libnlopt_cxx.lax libtool: link: ( cd ".libs" && rm -f "libnlopt_cxx.la" && ln -s "../libnlopt_cxx.la" "libnlopt_cxx.la" ) make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' Making all in octave make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' echo "#define NLOPT_OPTIMIZE_USAGE \\" > nlopt_optimize_usage.h sed 's/\"/\\"/g' ./nlopt_optimize.m | sed 's,^% ,\",;s,^%,\",;s,$,\\n\" \\,' >> nlopt_optimize_usage.h echo "" >> nlopt_optimize_usage.h make all-am make[3]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -I../util -g -O2 -MT dummy.o -MD -MP -MF .deps/dummy.Tpo -c -o dummy.o dummy.c mv -f .deps/dummy.Tpo .deps/dummy.Po /bin/sh ../libtool --tag=CC --mode=link g++ -std=gnu++11 -g -O2 -o dummy dummy.o -lm libtool: link: g++ -std=gnu++11 -g -O2 -o dummy dummy.o -lm make[3]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' Making all in test make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -I../util -g -O2 -MT testfuncs.o -MD -MP -MF .deps/testfuncs.Tpo -c -o testfuncs.o testfuncs.c mv -f .deps/testfuncs.Tpo .deps/testfuncs.Po g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I.. -I../api -I../util -g -O2 -MT testopt.o -MD -MP -MF .deps/testopt.Tpo -c -o testopt.o testopt.cpp testopt.cpp: In function 'int test_function(int)': testopt.cpp:223:21: warning: 'nlopt_result nlopt_minimize(nlopt_algorithm, int, nlopt_func_old, void*, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] maxeval, maxtime); ^ In file included from testopt.cpp:44: ../api/nlopt.h:329:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize( ^~~~~~~~~~~~~~ testopt.cpp:223:21: warning: 'nlopt_result nlopt_minimize(nlopt_algorithm, int, nlopt_func_old, void*, const double*, const double*, double*, double*, double, double, double, double, const double*, int, double)' is deprecated [-Wdeprecated-declarations] maxeval, maxtime); ^ In file included from testopt.cpp:44: ../api/nlopt.h:329:28: note: declared here NLOPT_EXTERN(nlopt_result) nlopt_minimize( ^~~~~~~~~~~~~~ mv -f .deps/testopt.Tpo .deps/testopt.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -std=gnu++11 -g -O2 -o testopt testfuncs.o testopt.o ../libnlopt_cxx.la -lm libtool: link: g++ -std=gnu++11 -g -O2 -o .libs/testopt testfuncs.o testopt.o ../.libs/libnlopt_cxx.so -lm -Wl,-rpath -Wl,/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' Making install in util make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/util' Making install in direct make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/direct' Making install in cdirect make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cdirect' Making install in stogo make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/stogo' Making install in praxis make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/praxis' Making install in luksan make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/luksan' Making install in crs make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/crs' Making install in mlsl make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mlsl' Making install in mma make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/mma' Making install in cobyla make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/cobyla' Making install in newuoa make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/newuoa' Making install in neldermead make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/neldermead' Making install in auglag make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/auglag' Making install in bobyqa make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/bobyqa' Making install in isres make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/isres' Making install in slsqp make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/slsqp' Making install in esch make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/esch' Making install in api make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make install-am make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make[3]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/include' /usr/bin/install -c -m 644 nlopt.h nlopt.f nlopt.hpp '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/include' /usr/bin/mkdir -p '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/share/man/man3' /usr/bin/install -c -m 644 nlopt.3 '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/share/man/man3' make[3]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/api' Making install in . make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' /usr/bin/mkdir -p '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libnlopt_cxx.la '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib' libtool: install: /usr/bin/install -c .libs/libnlopt_cxx.so.0.8.2 /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.so.0.8.2 libtool: install: (cd /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib && { ln -s -f libnlopt_cxx.so.0.8.2 libnlopt_cxx.so.0 || { rm -f libnlopt_cxx.so.0 && ln -s libnlopt_cxx.so.0.8.2 libnlopt_cxx.so.0; }; }) libtool: install: (cd /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib && { ln -s -f libnlopt_cxx.so.0.8.2 libnlopt_cxx.so || { rm -f libnlopt_cxx.so && ln -s libnlopt_cxx.so.0.8.2 libnlopt_cxx.so; }; }) libtool: install: /usr/bin/install -c .libs/libnlopt_cxx.lai /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.la libtool: install: /usr/bin/install -c .libs/libnlopt_cxx.a /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.a libtool: install: chmod 644 /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.a libtool: install: ranlib /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.a libtool: finish: PATH="/opt/python/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib ---------------------------------------------------------------------- Libraries have been installed in: /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/mkdir -p '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/pkgconfig' /usr/bin/install -c -m 644 nlopt.pc '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/pkgconfig' make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src' Making install in octave make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make install-am make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make[3]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/octave' Making install in test make[1]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' make[2]: Entering directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' make[1]: Leaving directory '/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/test' configure: Done installing library to /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/PkgFlags.R ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.cpp -o dummy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -g -O2 -I/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/include -fpic -g -O2 -c init_nloptr.c -o init_nloptr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -g -O2 -I/tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/include -fpic -g -O2 -c nloptr.c -o nloptr.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o nloptr.so dummy.o init_nloptr.o nloptr.o -lm -lm /tmp/Rtmp1sSHSE/R.INSTALL686061ded309/nloptr/src/nlopt_src/lib/libnlopt_cxx.a -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-nloptr/00new/nloptr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nloptr' finding HTML links ... done auglag html bobyqa html ccsaq html check.derivatives html cobyla html crs2lm html direct html is.nloptr html isres html lbfgs html mlsl html mma html neldermead html newuoa html nl.grad html nl.opts html nloptr-package html nloptr html nloptr.get.default.options html nloptr.print.options html print.nloptr html sbplx html slsqp html stogo html tnewton html varmetric html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nloptr) Making 'packages.html' ... done * installing *source* package 'statmod' ... ** package 'statmod' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c gaussq2.f -o gaussq2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o statmod.so gaussq2.o init.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-statmod/00new/statmod/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'statmod' finding HTML links ... done digammaf html elda html fitNBP html forward html gauss.quad html gauss.quad.prob html glmgam html glmnbfit html glmscoretest html growthcurve html hommel.test html invgauss html logmdigamma html matvec html meanT html mixedmodel html mscale html permp html plot.limdil html power html qresiduals html remlscor html remlscorgamma html sage.test html statmod html tweedie html welding html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statmod) Making 'packages.html' ... done * installing *source* package 'TH.data' ... ** package 'TH.data' successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** demo ** inst ** help *** installing help indices converting help for package 'TH.data' finding HTML links ... done GBSG2 html GlaucomaM html Westbc html birds html bodyfat html geyser html mammoexp html mn6.9 html sphase html wpbc html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TH.data) Making 'packages.html' ... done * installing *source* package 'ucminf' ... ** package 'ucminf' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c fortran.f -o fortran.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interface.c -o interface.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ucminf.so fortran.o interface.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ucminf/00new/ucminf/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ucminf' finding HTML links ... done ucminf html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ucminf) Making 'packages.html' ... done * installing *source* package 'scatterplot3d' ... ** package 'scatterplot3d' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scatterplot3d' finding HTML links ... done scatterplot3d html Rd warning: /tmp/RtmpXEDXLW/R.INSTALL42ce371c76/scatterplot3d/man/scatterplot3d.Rd:134: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scatterplot3d) Making 'packages.html' ... done * installing *source* package 'SparseM' ... ** package 'SparseM' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bckslv.f -o bckslv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c chol.f -o chol.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c chol2csr.f -o chol2csr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cholesky.f -o cholesky.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c csr.f -o csr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c extract.f -o extract.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sparskit.f -o sparskit.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c subscr.f -o subscr.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o init.o sparskit.o subscr.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-SparseM/00new/SparseM/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'diag' from package 'base' in package 'SparseM' Creating a generic function for 'diag<-' from package 'base' in package 'SparseM' Creating a generic function for 'norm' from package 'base' in package 'SparseM' Creating a new generic function for 'backsolve' in package 'SparseM' Creating a generic function for 'forwardsolve' from package 'base' in package 'SparseM' Creating a generic function for 'model.response' from package 'stats' in package 'SparseM' ** help *** installing help indices converting help for package 'SparseM' finding HTML links ... done SparseM.hb html SparseM.image html SparseM.ontology html SparseM.ops html Rd warning: /tmp/RtmpSNpagz/R.INSTALL49e1da51bcf/SparseM/man/SparseM.ops.Rd:101: file link 'determinant' in package 'base' does not exist and so has been treated as a topic SparseM.solve html character-null-class html lsq html matrix.coo-class html matrix.csc-class html matrix.csc.hb-class html matrix.csr-class html matrix.csr.chol-class html matrix.ssc-class html matrix.ssc.hb-class html matrix.ssr-class html mslm-class html numeric-null-class html slm-class html slm html slm.fit html slm.methods html summary.mslm-class html summary.slm-class html triogramX html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseM) Making 'packages.html' ... done * installing *source* package 'MatrixModels' ... ** package 'MatrixModels' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MatrixModels' finding HTML links ... done Model-class html glm4 html glpModel-class html lm.fit.sparse html mkRespMod html model.Matrix html modelMatrix-class html predModule-class html resid-et-al html respModule-class html reweightPred html solveCoef html updateMu html updateWts html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixModels) Making 'packages.html' ... done * installing *source* package 'fit.models' ... ** package 'fit.models' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fit.models' finding HTML links ... done center html ddPlot.covfm html designMD html distancePlot.covfm html ellipsesPlot.covfm html fit.models html fmclass html overlaidKernelDensityPlot html overlaidQQPlot html overlaidSimpleRegressionPlot html plot.covfm html plot.glmfm html plot.lmfm html screePlot.covfm html sideBySideIndexPlot html sideBySideKernelDensityPlot html sideBySideQQPlot html sideBySideScatterPlot html summary.covfm html summary.glmfm html summary.lmfm html vcor html Rd warning: /tmp/RtmpoKvXR1/R.INSTALL5ac28c0abe9/fit.models/man/vcor.Rd:19: file link 'cov2cor' in package 'stats' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fit.models) Making 'packages.html' ... done * installing *source* package 'DEoptimR' ... ** package 'DEoptimR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DEoptimR' finding HTML links ... done JDEoptim html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DEoptimR) Making 'packages.html' ... done * installing *source* package 'deldir' ... ** package 'deldir' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c acchk.f -o acchk.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c addpt.f -o addpt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c adjchk.f -o adjchk.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c binsrt.f -o binsrt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c circen.f -o circen.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cross.f -o cross.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crossutil.f -o crossutil.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c delet.f -o delet.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c delet1.f -o delet1.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c delout.f -o delout.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c delseg.f -o delseg.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dirout.f -o dirout.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dirseg.f -o dirseg.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dldins.f -o dldins.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c initad.f -o initad.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c insrt.f -o insrt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c insrt1.f -o insrt1.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c intri.f -o intri.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c locn.f -o locn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c master.f -o master.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c mnnd.f -o mnnd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c pred.f -o pred.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qtest.f -o qtest.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qtest1.f -o qtest1.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c stoke.f -o stoke.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c succ.f -o succ.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c swap.f -o swap.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c testeq.f -o testeq.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c triar.f -o triar.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c trifnd.f -o trifnd.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o crossutil.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-deldir/00new/deldir/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'deldir' finding HTML links ... done cvt html deldir-internal html deldir html divchain html divchain.default html divchain.deldir html duplicatedxy html grapherXmpl html lawSummary html niProperties html plot.deldir html plot.divchain html plot.tile.list html plot.triang.list html print.deldir html print.tileInfo html seaweed html tile.centroids html tile.list html tileArea html tileInfo html tilePerim html triMat html triang.list html volTriPoints html which.tile html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deldir) Making 'packages.html' ... done * installing *source* package 'LearnBayes' ... ** package 'LearnBayes' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'LearnBayes' finding HTML links ... done achievement html baseball.1964 html bayes.influence html bayes.model.selection html bayes.probit html bayesresiduals html bermuda.grass html beta.select html betabinexch html betabinexch0 html bfexch html bfindep html binomial.beta.mix html birdextinct html birthweight html blinreg html blinregexpected html blinregpred html bprobit.probs html bradley.terry.post html breastcancer html calculus.grades html cancermortality html careertraj.setup html cauchyerrorpost html chemotherapy html ctable html darwin html discint html discrete.bayes.2 html discrete.bayes html dmnorm html dmt html donner html election.2008 html election html footballscores html gibbs html groupeddatapost html hearttransplants html hiergibbs html histprior html howardprior html impsampling html indepmetrop html iowagpa html jeter2004 html laplace html lbinorm html logctablepost html logisticpost html logpoissgamma html logpoissnormal html marathontimes html mnormt.onesided html mnormt.twosided html mycontour html normal.normal.mix html normal.select html normchi2post html normnormexch html normpostpred html normpostsim html ordergibbs html pbetap html pbetat html pdisc html pdiscp html poissgamexch html poisson.gamma.mix html predplot html prior.two.parameters html puffin html rdirichlet html reg.gprior.post html regroup html rejectsampling html rigamma html rmnorm html rmt html robustt html rtruncated html rwmetrop html schmidt html simcontour html sir html sluggerdata html soccergoals html stanfordheart html strikeout html studentdata html transplantpost html triplot html weibullregpost html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LearnBayes) Making 'packages.html' ... done * installing *source* package 'expm' ... ** package 'expm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_dgebal.c -o R_dgebal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expm-eigen.c -o expm-eigen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expm.c -o expm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logm-eigen.c -o logm-eigen.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c matexp.f -o matexp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matexp_MH09.c -o matexp_MH09.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matpow.c -o matpow.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c matrexp.f -o matrexp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c matrexpO.f -o matrexpO.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c mexp-common.f -o mexp-common.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o expm.so R_dgebal.o expm-eigen.o expm.o init.o logm-eigen.o matexp.o matexp_MH09.o matpow.o matrexp.o matrexpO.o mexp-common.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-expm/00new/expm/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'expm' finding HTML links ... done balance html expAtv html expm.Higham08 html expm html expmCond html expmFrechet html logm html matStig html matpow html sqrtm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (expm) Making 'packages.html' ... done * installing *source* package 'commonmark' ... ** package 'commonmark' successfully unpacked and MD5 sums checked ** using staged installation ** libs rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'commonmark' finding HTML links ... done commonmark html extensions html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) Making 'packages.html' ... done * installing *source* package 'xml2' ... ** package 'xml2' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lxml2 -lz -llzma -lm -ldl ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -lz -llzma -lm -ldl -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xml2/00new/xml2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xml2' finding HTML links ... done as_list html as_xml_document html download_xml html oldclass html read_xml html url_absolute html url_escape html url_parse html write_xml html xml2_example html xml_attr html xml_cdata html xml_children html xml_comment html xml_dtd html xml_find_all html xml_missing html xml_name html xml_new_document html xml_ns html xml_ns_strip html xml_path html xml_replace html xml_serialize html Rd warning: /tmp/RtmpPUGxuZ/R.INSTALL97125e1c823/xml2/man/xml_serialize.Rd:15: file link 'connection' in package 'base' does not exist and so has been treated as a topic xml_set_namespace html xml_structure html Rd warning: /tmp/RtmpPUGxuZ/R.INSTALL97125e1c823/xml2/man/xml_structure.Rd:17: file link 'connection' in package 'base' does not exist and so has been treated as a topic xml_text html xml_type html xml_url html xml_validate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xml2) Making 'packages.html' ... done * installing *source* package 'brio' ... ** package 'brio' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-brio/00new/brio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'brio' finding HTML links ... done file_line_endings html readLines html read_file html read_lines html writeLines html write_file html write_lines html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brio) Making 'packages.html' ... done * installing *source* package 'praise' ... ** package 'praise' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'praise' finding HTML links ... done praise html praise_parts html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praise) Making 'packages.html' ... done * installing *source* package 'ps' ... ** package 'ps' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -g -O2 -Wall px.c -o px gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/4.0.3/lib/R/lib -lR installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-ps/00new/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ps' finding HTML links ... done CleanupReporter html errno html ps html ps_boot_time html ps_children html ps_cmdline html ps_connections html ps_cpu_count html ps_cpu_times html ps_create_time html ps_cwd html ps_descent html ps_disk_partitions html ps_disk_usage html ps_environ html ps_exe html ps_get_nice html ps_handle html ps_interrupt html ps_is_running html ps_kill html ps_kill_tree html ps_loadavg html ps_memory_info html ps_name html ps_num_fds html ps_num_threads html ps_open_files html ps_os_type html ps_pid html ps_pids html ps_ppid html ps_resume html ps_send_signal html ps_shared_lib_users html ps_shared_libs html ps_status html ps_suspend html ps_system_cpu_times html ps_system_memory html ps_system_swap html ps_terminal html ps_terminate html ps_tty_size html ps_uids html ps_username html ps_users html signals html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ps) Making 'packages.html' ... done * installing *source* package 'quadprog' ... ** package 'quadprog' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -msse2 -mfpmath=sse -fpic -g -O2 -c aind.f -o aind.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -msse2 -mfpmath=sse -fpic -g -O2 -c solve.QP.compact.f -o solve.QP.compact.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -msse2 -mfpmath=sse -fpic -g -O2 -c solve.QP.f -o solve.QP.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -msse2 -mfpmath=sse -fpic -g -O2 -c util.f -o util.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o quadprog.so aind.o init.o solve.QP.compact.o solve.QP.o util.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-quadprog/00new/quadprog/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'quadprog' finding HTML links ... done solve.QP html solve.QP.compact html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quadprog) Making 'packages.html' ... done * installing *source* package 'urca' ... ** package 'urca' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c UnitRootMacKinnon.f -o UnitRootMacKinnon.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o urca.so UnitRootMacKinnon.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-urca/00new/urca/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'urca' finding HTML links ... done Denmark html ECB html Finland html MacKinnonPValues html NPEXT html NPORG html Raotbl1 html Raotbl2 html Raotbl3 html Raotbl4 html Raotbl5 html Raotbl6 html Raotbl7 html UKconinc html UKconsumption html UKpppuip html ablrtest html alphaols html alrtest html bh5lrtest html bh6lrtest html blrtest html ca.jo-class html ca.jo html ca.po-class html ca.po html cajo.test-class html cajolst html cajools html cajorls html lttest html plot-methods html plotres html show-methods html show.urca html summary-methods html sumurca-class html ur.df-class html ur.df html ur.ers-class html ur.ers html ur.kpss-class html ur.kpss html ur.pp-class html ur.pp html ur.sp-class html ur.sp html ur.za-class html ur.za html urca-class html urca-internal html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (urca) Making 'packages.html' ... done * installing *source* package 'backports' ... ** package 'backports' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dotsElt.c -o dotsElt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dotsLength.c -o dotsLength.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o backports.so dotsElt.o dotsLength.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-backports/00new/backports/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'backports' finding HTML links ... done R_user_dir html URLencode html anyNA html asplit html backports-package html capture.output html dQuote html deparse1 html dir.exists html dotsElt html dotsLength html endsWith html file.info html file.size html get0 html hasName html import html isFALSE html isNamespaceLoaded html isTRUE html lengths html list2DF html removeSource html startsWith html str2expression html str2lang html strrep html suppressWarnings html trimws html valid.factor html vignetteInfo html warningCondition html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (backports) Making 'packages.html' ... done * installing *source* package 'generics' ... ** package 'generics' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'generics' finding HTML links ... done augment html calculate html coercion-factor html coercion-time-difference html compile html components html equation html estfun html evaluate html explain html fit html fit_xy html generate html generics-package html glance html hypothesize html interpolate html learn html min_grid html prune html refit html required_pkgs html setops html specify html tidy html train html tunable html var_imp html varying_args html visualize html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) Making 'packages.html' ... done * installing *source* package 'glue' ... ** package 'glue' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'glue' finding HTML links ... done as_glue html glue-deprecated html glue html glue_col html glue_collapse html Rd warning: /tmp/RtmpMBDbtA/R.INSTALLe5423c437b3/glue/man/glue_collapse.Rd:13: file link 'NA_character_' in package 'base' does not exist and so has been treated as a topic glue_safe html glue_sql html identity_transformer html quoting html trim html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) Making 'packages.html' ... done * installing *source* package 'rlang' ... ** package 'rlang' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rlang' finding HTML links ... done abort html are_na html arg_match html as_box html as_bytes html as_data_mask html as_env html as_environment html as_function html as_label html as_name html as_overscope html as_pairlist html as_quosure html as_string html as_utf8_character html bare-type-predicates html box html call2 html call_args html call_fn html call_inspect html call_modify html call_name html call_parse_type html call_standardise html caller_env html caller_fn html caller_frame html catch_cnd html chr_unserialise_unicode html cnd html cnd_message html cnd_muffle html cnd_signal html cnd_type html done html dots_definitions html dots_n html dots_values html duplicate html dyn-dots html empty_env html enquo0 html entrace html env html env_bind html env_bind_exprs html env_binding_are_active html env_binding_lock html env_browse html env_bury html env_clone html env_depth html env_get html env_has html env_inherits html env_lock html env_name html env_names html env_parent html env_poke html env_print html env_unbind html env_unlock html eval_bare html eval_tidy html exec html exiting html expr_interp html expr_label html expr_print html exprs_auto_name html f_rhs html f_text html faq-options html flatten html fn_body html fn_env html fn_fmls html format_error_bullets html frame_position html friendly_type html get_env html has_length html has_name html hash html inherits_any html inject html invoke html is_call html is_callable html is_condition html is_copyable html is_empty html is_env html is_environment html is_expr html is_expression html is_formula html is_frame html is_function html is_installed html is_integerish html is_interactive html is_lang html is_named html is_namespace html is_pairlist html is_reference html is_stack html is_symbol html is_true html is_weakref html lang html lang_head html lang_modify html last_error html lifecycle html list2 html local_bindings html local_options html missing html missing_arg html mut_node_car html names2 html new-vector-along-retired html new-vector html new_call html new_formula html new_function html new_node html new_quosures html new_weakref html ns_env html nse-defuse html nse-force html op-definition html op-get-attr html op-na-default html op-null-default html overscope_eval_next html pairlist2 html parse_expr html parse_quosure html prepend html prim_name html quo_expr html quo_label html quo_squash html quosure html raw_deparse_str html rep_along html restarting html return_from html rlang_backtrace_on_error html rst_abort html rst_list html scalar-type-predicates html scoped_env html scoped_interactive html search_envs html seq2 html set_attrs html set_expr html set_names html splice html stack html stack_trim html string html switch_type html sym html tidyeval-data html trace_back html type-predicates html type_of html vec_poke_n html vector-coercion html vector-construction html vector-old-ctors html with_abort html with_env html with_handlers html with_restarts html wref_key html zap html zap_srcref html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) Making 'packages.html' ... done * installing *source* package 'AUC' ... ** package 'AUC' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'AUC' finding HTML links ... done AUC-package html AUCNews html accuracy html auc html churn html plot.AUC html roc html sensitivity html specificity html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AUC) Making 'packages.html' ... done * installing *source* package 'cmprsk' ... ** package 'cmprsk' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cincsub.f -o cincsub.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crr.f -o crr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crstm.f -o crstm.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tpoi.f -o tpoi.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o cmprsk.so cincsub.o crr.o crstm.o tpoi.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-cmprsk/00new/cmprsk/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cmprsk' finding HTML links ... done crr html cuminc html extract.cuminc html plot.cuminc html plot.predict.crr html predict.crr html print.crr html print.cuminc html summary.crr html timepoints html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmprsk) Making 'packages.html' ... done * installing *source* package 'coda' ... ** package 'coda' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'coda' finding HTML links ... done Cramer html HPDinterval html as.ts.mcmc html autocorr html autocorr.diag html autocorr.plot html batchSE html bugs2jags html coda.options html codamenu html crosscorr html crosscorr.plot html cumuplot html densplot html effectiveSize html gelman.diag html gelman.plot html geweke.diag html geweke.plot html heidel.diag html linepost html mcmc html mcmc.convert html mcmc.list html mcmc.subset html mcmcUpgrade html mcpar html multi.menu html nchain html plot.mcmc html raftery.diag html read.and.check html read.coda html read.coda.interactive html read.openbugs html rejectionRate html spectrum0 html spectrum0.ar html summary.mcmc html thin html time.mcmc html traceplot html trellisplots html varnames html window.mcmc html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coda) Making 'packages.html' ... done * installing *source* package 'gee' ... ** package 'gee' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dgedi.f -o dgedi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dgefa.f -o dgefa.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ugee.c -o ugee.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gee.so dgedi.o dgefa.o ugee.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gee/00new/gee/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gee' finding HTML links ... done gee html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gee) Making 'packages.html' ... done * installing *source* package 'irlba' ... ** package 'irlba' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Matrix/include' -I/usr/local/include -fpic -g -O2 -c irlb.c -o irlb.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Matrix/include' -I/usr/local/include -fpic -g -O2 -c utility.c -o utility.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o irlba.so irlb.o utility.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-irlba/00new/irlba/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'irlba' finding HTML links ... done irlba html partial_eigen html prcomp_irlba html ssvd html summary.irlba_prcomp html svdr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irlba) Making 'packages.html' ... done * installing *source* package 'Kendall' ... ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c Kendall.f -o Kendall.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Kendall.so Kendall.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Kendall/00new/Kendall/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Kendall' finding HTML links ... done GuelphP html Kendall-package html Kendall html MannKendall html PrecipGL html SeasonalMannKendall html print.Kendall html summary.Kendall html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Kendall) Making 'packages.html' ... done * installing *source* package 'leaps' ... ** package 'leaps' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c leaps.f -o leaps.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c leapshdr.f -o leapshdr.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o leaps.so leaps.o leapshdr.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-leaps/00new/leaps/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'leaps' finding HTML links ... done leaps html leaps.setup html plot.regsubsets html regsubsets html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaps) Making 'packages.html' ... done * installing *source* package 'lm.beta' ... ** package 'lm.beta' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lm.beta' finding HTML links ... done coef.lm.beta html lm.beta-package html lm.beta html print.lm.beta html summary.lm.beta html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lm.beta) Making 'packages.html' ... done * installing *source* package 'lmodel2' ... ** package 'lmodel2' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lmodel2' finding HTML links ... done lmodel2 html mod2ex1 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lmodel2) Making 'packages.html' ... done * installing *source* package 'maps' ... ** package 'maps' successfully unpacked and MD5 sums checked ** using staged installation checking for gawk... gawk configure: creating ./config.status config.status: creating src/Makefile ** libs ** arch - make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile init.o mapclip.o mapget.o smooth.o thin.o make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mapclip.c -o mapclip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mapget.c -o mapget.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c smooth.c -o smooth.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c thin.c -o thin.o make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' "/opt/R/4.0.3/lib/R/bin/R" CMD SHLIB -o maps.so init.o mapclip.o mapget.o smooth.o thin.o make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o maps.so init.o mapclip.o mapget.o smooth.o thin.o -L/opt/R/4.0.3/lib/R/lib -lR make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile Gmake make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' gcc -g -O2 -I/usr/local/include -L/usr/local/lib Gmake.c -o Gmake make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile Lmake make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' gcc -g -O2 -I/usr/local/include -L/usr/local/lib Lmake.c -o Lmake make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile world2.line make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' Converting world to world2 gawk -f ./convert.awk < world.line > world2.line Creating legacy world2 database gawk -f ./legacy_convert.awk < legacy_world.line > legacy_world2.line make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile county.L state.L usa.L nz.L world.L world2.L italy.L france.L state.vbm.L state.carto.L legacy_world.L legacy_world2.L lakes.L make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' ./Lmake 0 s b county.line county.linestats ../inst/mapdata/county.L ./Lmake 0 s b state.line state.linestats ../inst/mapdata/state.L ./Lmake 0 s b usa.line usa.linestats ../inst/mapdata/usa.L ./Lmake 0 s b nz.line nz.linestats ../inst/mapdata/nz.L ./Lmake 0 s b world.line world.linestats ../inst/mapdata/world.L ./Lmake 0 s b world2.line world2.linestats ../inst/mapdata/world2.L ./Lmake 0 s b italy.line italy.linestats ../inst/mapdata/italy.L ./Lmake 0 s b france.line france.linestats ../inst/mapdata/france.L ./Lmake 0 p b state.vbm.line state.vbm.linestats ../inst/mapdata/state.vbm.L ./Lmake 0 p b state.carto.line state.carto.linestats ../inst/mapdata/state.carto.L ./Lmake 0 s b legacy_world.line legacy_world.linestats ../inst/mapdata/legacy_world.L ./Lmake 0 s b legacy_world2.line legacy_world2.linestats ../inst/mapdata/legacy_world2.L ./Lmake 0 s b lakes.line lakes.linestats ../inst/mapdata/lakes.L make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile county.G state.G usa.G nz.G world.G world2.G italy.G france.G state.vbm.G state.carto.G legacy_world.G legacy_world2.G lakes.G make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' ./Gmake b county.gon county.gonstats ../inst/mapdata/county.G ../inst/mapdata/county.L ./Gmake b state.gon state.gonstats ../inst/mapdata/state.G ../inst/mapdata/state.L ./Gmake b usa.gon usa.gonstats ../inst/mapdata/usa.G ../inst/mapdata/usa.L ./Gmake b nz.gon nz.gonstats ../inst/mapdata/nz.G ../inst/mapdata/nz.L ./Gmake b world.gon world.gonstats ../inst/mapdata/world.G ../inst/mapdata/world.L ./Gmake b world2.gon world2.gonstats ../inst/mapdata/world2.G ../inst/mapdata/world2.L ./Gmake b italy.gon italy.gonstats ../inst/mapdata/italy.G ../inst/mapdata/italy.L ./Gmake b france.gon france.gonstats ../inst/mapdata/france.G ../inst/mapdata/france.L ./Gmake b state.vbm.gon state.vbm.gonstats ../inst/mapdata/state.vbm.G ../inst/mapdata/state.vbm.L ./Gmake b state.carto.gon state.carto.gonstats ../inst/mapdata/state.carto.G ../inst/mapdata/state.carto.L ./Gmake b legacy_world.gon legacy_world.gonstats ../inst/mapdata/legacy_world.G ../inst/mapdata/legacy_world.L ./Gmake b legacy_world2.gon legacy_world2.gonstats ../inst/mapdata/legacy_world2.G ../inst/mapdata/legacy_world2.L ./Gmake b lakes.gon lakes.gonstats ../inst/mapdata/lakes.G ../inst/mapdata/lakes.L make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile county.N state.N usa.N nz.N world.N world2.N italy.N france.N state.vbm.N state.carto.N legacy_world.N legacy_world2.N lakes.N make[1]: Entering directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' make[1]: Leaving directory '/tmp/RtmpzHac8P/R.INSTALL13df5da2f2da/maps/src' installing to /opt/R/4.0.3/lib/R/library/00LOCK-maps/00new/maps/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maps' finding HTML links ... done Spatial2map html area.map html canada.cities html county html county.fips html france html identify.map html internal html internal2 html iso.expand html iso3166 html italy html lakes html legacy_world html map html map.axes html map.cities html map.scale html map.text html map.where html maps-deprecated html match.map html nz html ozone html polygon html smooth.map html state html state.carto html state.fips html state.vbm html us.cities html usa html world html world.cities html world.legacy html world2 html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maps) Making 'packages.html' ... done * installing *source* package 'mclust' ... ** package 'mclust' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dmvnorm.f -o dmvnorm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c mclust.f -o mclust.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c mclustaddson.f -o mclustaddson.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mclust.so dmvnorm.o init.o mclust.o mclustaddson.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mclust/00new/mclust/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mclust' finding HTML links ... done Baudry_etal_2010_JCGS_examples html BrierScore html EuroUnemployment html GvHD html Mclust html MclustBootstrap html MclustDA html MclustDR html MclustDRsubsel html MclustSSC html acidity html adjustedRandIndex html banknote html bic html cdens html cdensE html cdfMclust html chevron html clPairs html classError html classPriorProbs html clustCombi-internals html clustCombi html clustCombiOptim html combMat html combiPlot html combiTree html coordProj html covw html cross html cvMclustDA html decomp2sigma html defaultPrior html dens html densityMclust html densityMclust.diagnostic html diabetes html dmvnorm html em html emControl html emE html entPlot html errorBars html estep html estepE html gmmhd html hc html hcE html hcRandomPairs html hclass html hdrlevels html hypvol html icl html imputeData html imputePairs html logLik.Mclust html logLik.MclustDA html majorityVote html map html mapClass html mclust-deprecated html mclust-internal html mclust-package html mclust.options html mclust1Dplot html mclust2Dplot html mclustBIC html mclustBICupdate html mclustBootstrapLRT html mclustICL html mclustLoglik html mclustModel html mclustModelNames html mclustVariance html me html me.weighted html meE html mstep html mstepE html mvn html mvnX html nMclustParams html nVarParams html partconv html partuniq html plot.Mclust html plot.MclustBoostrap html plot.MclustDA html plot.MclustDR html plot.MclustSSC html plot.clustCombi html plot.densityMclust html plot.hc html plot.mclustBIC html plot.mclustICL html predict.Mclust html predict.MclustDA html predict.MclustDR html predict.MclustSSC html predict.densityMclust html priorControl html randProj html randomOrthogonalMatrix html sigma2decomp html sim html simE html summary.Mclust html summary.MclustBootstrap html summary.MclustDA html summary.MclustDR html summary.MclustSSC html summary.mclustBIC html surfacePlot html thyroid html uncerPlot html unmap html wdbc html wreath html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mclust) Making 'packages.html' ... done * installing *source* package 'metafor' ... ** package 'metafor' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'metafor' finding HTML links ... done addpoly html addpoly.default html addpoly.rma html anova.rma html baujat html bldiag html blup html coef.permutest.rma.uni html coef.rma html confint.rma html contrmat html cumul html dat.bangertdrowns2004 html dat.begg1989 html dat.berkey1998 html dat.bonett2010 html dat.bourassa1996 html dat.colditz1994 html dat.collins1985a html dat.collins1985b html dat.curtis1998 html dat.debruin2009 html dat.egger2001 html dat.fine1993 html dat.gibson2002 html dat.graves2010 html dat.hackshaw1998 html dat.hart1999 html dat.hasselblad1998 html dat.hine1989 html dat.ishak2007 html dat.konstantopoulos2011 html dat.laopaiboon2015 html dat.lee2004 html dat.li2007 html dat.linde2005 html dat.mcdaniel1994 html dat.molloy2014 html dat.nielweise2007 html dat.nielweise2008 html dat.normand1999 html dat.pagliaro1992 html dat.pignon2000 html dat.pritz1997 html dat.raudenbush1985 html dat.riley2003 html dat.senn2013 html dat.yusuf1985 html escalc html fitstats html fitted.rma html forest html forest.cumul.rma html forest.default html forest.rma html formula.rma html fsn html funnel html gosh html Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/gosh.Rd:31: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/gosh.Rd:31: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/gosh.Rd:31: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic hc html influence.rma.mv html Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/influence.rma.mv.Rd:39: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/influence.rma.mv.Rd:39: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/influence.rma.mv.Rd:39: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic influence.rma.uni html labbe html leave1out html llplot html metafor-package html metafor.news html methods.escalc html methods.list.rma html model.matrix.rma html permutest html plot.cumul.rma html plot.gosh.rma html plot.infl.rma.uni html plot.rma html predict.rma html print.anova.rma html print.confint.rma html print.escalc html print.fsn html print.gosh.rma html print.hc.rma.uni html print.list.rma html print.permutest.rma.uni html print.ranktest.rma html print.regtest.rma html print.rma html print.robust.rma html profile.rma html Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/profile.rma.Rd:54: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/profile.rma.Rd:54: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/profile.rma.Rd:54: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic qqnorm.rma html radial html ranef html ranktest html regtest html replmiss html reporter html residuals.rma html Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/residuals.rma.Rd:74: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/residuals.rma.Rd:74: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmppe0y6x/R.INSTALL166355905c4e/metafor/man/residuals.rma.Rd:74: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic rma.glmm html rma.mh html rma.mv html rma.peto html rma.uni html robust html simulate.rma html to.long html to.table html to.wide html transf html trimfill html update.rma html vcov.rma html vif html weights.rma html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metafor) Making 'packages.html' ... done * installing *source* package 'modeldata' ... ** package 'modeldata' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'modeldata' finding HTML links ... done Chicago html Sacramento html Smithsonian html ad_data html ames html attrition html biomass html bivariate html car_prices html cells html check_times html concrete html covers html credit_data html crickets html drinks html grants html hpc_cv html hpc_data html lending_club html meats html mlc_churn html oils html okc html okc_text html parabolic html pathology html pd_speech html penguins html scat html small_fine_foods html solubility_test html stackoverflow html two_class_dat html two_class_example html wa_churn html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modeldata) Making 'packages.html' ... done * installing *source* package 'muhaz' ... ** package 'muhaz' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c muhaz.f -o muhaz.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o muhaz.so init.o muhaz.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-muhaz/00new/muhaz/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'muhaz' finding HTML links ... done kphaz.fit html kphaz.plot html muhaz html muhaz.object html pehaz html pehaz.object html plot.muhaz html plot.pehaz html print.pehaz html summary.muhaz html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (muhaz) Making 'packages.html' ... done * installing *source* package 'sp' ... ** package 'sp' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rcentroid.c -o Rcentroid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gcdist.c -o gcdist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pip.c -o pip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pip2.c -o pip2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sp_xports.c -o sp_xports.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c surfaceArea.c -o surfaceArea.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zerodist.c -o zerodist.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sp/00new/sp/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sp' finding HTML links ... done 00sp html CRS-class html DMS-class html GridTopology-class html Line-class html Line html Lines-class html Polygon-class html Polygons-class html Rlogo html Spatial-class html SpatialGrid-class html SpatialGrid html SpatialGridDataFrame-class html SpatialGridDataFrame html SpatialLines-class html SpatialLines html SpatialLinesDataFrame-class html SpatialMultiPoints-class html SpatialMultiPoints html SpatialMultiPointsDataFrame-class html SpatialPixels-class html SpatialPixelsDataFrame-class html SpatialPoints-class html SpatialPoints html SpatialPointsDataFrame-class html SpatialPolygons-class html SpatialPolygons html SpatialPolygonsDataFrame-class html addattr html aggregate html as.SpatialPolygons.GridTopology html as.SpatialPolygons.PolygonsList html asciigrid html bbox html bpy.colors html bubble html char2dms html compassRose html coordinates-methods html coordinates html coordnames-methods html degaxis html dimensions html disaggregate html flip html geometry-methods html gridded-methods html gridindex2nb html gridlines html image html is.projected html loadmeuse html mapasp html merge html meuse html meuse.grid html meuse.grid_ll html meuse.riv html over html panel html point.in.polygon html polygons-methods html polygons html recenter-methods html select.spatial html sp-deprecated html spChFIDs-methods html spDistsN1 html spTransform html spplot html spsample html stack html surfaceArea html zerodist html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sp) Making 'packages.html' ... done * installing *source* package 'speedglm' ... ** package 'speedglm' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'speedglm' finding HTML links ... done add1&drop1 html Rd warning: /tmp/RtmpF4xJcG/R.INSTALL186860d8bd76/speedglm/man/add1&drop1.Rd:41: file link 'drop1' in package 'stats' does not exist and so has been treated as a topic data1 html miscellanea-Internal html predict.speedglm html predict.speedlm html speedglm-package html speedglm html speedlm html summary.speedglm html summary.speedlm html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (speedglm) Making 'packages.html' ... done * installing *source* package 'zoo' ... ** package 'zoo' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c coredata.c -o coredata.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c lag.c -o lag.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o zoo.so coredata.o init.o lag.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-zoo/00new/zoo/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'zoo' finding HTML links ... done MATCH html ORDER html aggregate.zoo html as.zoo html coredata html frequency html ggplot2.zoo html index html is.regular html lag.zoo html make.par.list html merge.zoo html na.StructTS html na.aggregate html na.approx html na.fill html na.locf html na.trim html plot.zoo html read.zoo html rollapply html rollmean html window.zoo html xblocks html xyplot.zoo html yearmon html yearqtr html zoo html zooreg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zoo) Making 'packages.html' ... done * installing *source* package 'lava' ... ** package 'lava' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lava' finding HTML links ... done By html Col html Combine html Expand html Graph html Grep html Missing html Model html NA2x html NR html PD html Range.lvm html addvar html backdoor html baptize html binomial.rd html blockdiag html bmd html bmidata html bootstrap html bootstrap.lvm html brisa html calcium html cancel html children html click html closed.testing html colorbar html commutation html compare html complik html confband html confint.lvmfit html confpred html constrain-set html contr html correlation html covariance html csplit html curly html cv html devcoords html diagtest html dsep.lvm html equivalence html estimate.default html estimate.lvm html eventTime html fplot html getMplus html getSAS html gof html hubble html hubble2 html iid html images html indoorenv html intercept html internal html ksmooth2 html labels-set html lava-package html lava.options html lvm html makemissing html measurement.error html missingdata html mixture html modelsearch html multinomial html mvnmix html nldata html nsem html op_concat html op_match html ordinal-set html ordreg html parpos html partialcor html path html pcor html pdfconvert html plot.estimate html plot.lvm html plot.sim html plotConf html predict.lvm html predictlvm html rbind.Surv html regression-set html revdiag html rmvar html rotate2 html scheffe html semdata html serotonin html serotonin2 html sim html sim.default html spaghetti html stack.estimate html subset.lvm html summary.sim html timedep html toformula html tr html trim html twindata html twostage html twostage.lvmfit html twostageCV html vars html vec html wait html wkm html wrapvec html zibreg html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lava) Making 'packages.html' ... done * installing *source* package 'caTools' ... ** package 'caTools' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Gif2R.cpp -o Gif2R.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c GifTools.cpp -o GifTools.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c caTools_init.c -o caTools_init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o caTools.so Gif2R.o GifTools.o caTools_init.o runfunc.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-caTools/00new/caTools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'caTools' finding HTML links ... done ENVI html GIF html LogitBoost html base64 html caTools-internal html caTools-package html colAUC html combs html predict.LogitBoost html runmad html runmean html runminmax html Rd warning: /tmp/RtmpLa3iQk/R.INSTALL19d62d61fdf1/caTools/man/runminmax.Rd:86: file link 'rollmax' in package 'zoo' does not exist and so has been treated as a topic runquantile html Rd warning: /tmp/RtmpLa3iQk/R.INSTALL19d62d61fdf1/caTools/man/runquantile.Rd:97: file link 'rollmedian' in package 'zoo' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpLa3iQk/R.INSTALL19d62d61fdf1/caTools/man/runquantile.Rd:103: file link 'rollmax' in package 'zoo' does not exist and so has been treated as a topic runsd html sample.split html sumexact html trapz html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caTools) Making 'packages.html' ... done * installing *source* package 'askpass' ... ** package 'askpass' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-askpass/00new/askpass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'askpass' finding HTML links ... done askpass html ssh_askpass html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (askpass) Making 'packages.html' ... done * installing *source* package 'openxlsx' ... ** package 'openxlsx' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helper_functions.cpp -o helper_functions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c load_workbook.cpp -o load_workbook.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c openxlsx_init.c -o openxlsx_init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c read_workbook.cpp -o read_workbook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_data.cpp -o write_data.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_file.cpp -o write_file.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_file_2.cpp -o write_file_2.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o openxlsx.so RcppExports.o helper_functions.o load_workbook.o openxlsx_init.o read_workbook.o write_data.o write_file.o write_file_2.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-openxlsx/00new/openxlsx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'openxlsx' finding HTML links ... done addCreator html addFilter html addStyle html addWorksheet html all.equal html cloneWorksheet html conditionalFormat html conditionalFormatting html convertFromExcelRef html convertToDate html convertToDateTime html copyWorkbook html createComment html createNamedRegion html createStyle html createWorkbook html dataValidation html deleteData html freezePane html getBaseFont html getCellRefs html getCreators html getDateOrigin html getNamedRegions html getSheetNames html getStyles html getTables html groupColumns html groupRows html insertImage html insertPlot html int2col html loadWorkbook html makeHyperlinkString html mergeCells html modifyBaseFont html names html openXL html openxlsx html pageBreak html pageSetup html protectWorkbook html protectWorksheet html read.xlsx html readWorkbook html removeCellMerge html removeColWidths html removeComment html removeFilter html removeRowHeights html removeTable html removeWorksheet html renameWorksheet html replaceStyle html saveWorkbook html setColWidths html setFooter html setHeader html setHeaderFooter html setLastModifiedBy html setRowHeights html sheetVisibility html sheetVisible html sheets html showGridLines html ungroupColumns html ungroupRows html worksheetOrder html write.xlsx html writeComment html writeData html writeDataTable html writeFormula html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openxlsx) Making 'packages.html' ... done * installing *source* package 'munsell' ... ** package 'munsell' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'munsell' finding HTML links ... done check_mnsl html chroma_slice html complement html complement_slice html darker html desaturate html fix_mnsl html hue_slice html hvc2mnsl html in_gamut html lighter html mnsl html mnsl2hvc html mnsl_hues html munsell html pbgyr html plot_closest html plot_hex html plot_mnsl html rgb2mnsl html rygbp html saturate html seq_mnsl html text_colour html theme_munsell html value_slice html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) Making 'packages.html' ... done * installing *source* package 'checkmate' ... ** package 'checkmate' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c all_missing.c -o all_missing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c any_infinite.c -o any_infinite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c any_missing.c -o any_missing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c any_nan.c -o any_nan.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c checks.c -o checks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c find_min_nchar.c -o find_min_nchar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c guess_type.c -o guess_type.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c helper.c -o helper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c integerish.c -o integerish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c is_sorted.c -o is_sorted.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c qassert.c -o qassert.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c which_first.c -o which_first.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o checkmate.so all_missing.o any_infinite.o any_missing.o any_nan.o checks.o find_min_nchar.o guess_type.o helper.o init.o integerish.o is_sorted.o qassert.o which_first.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-checkmate/00new/checkmate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'checkmate' finding HTML links ... done AssertCollection html anyInfinite html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/anyInfinite.Rd:17: file link 'is.atomic' in package 'base' does not exist and so has been treated as a topic anyMissing html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/anyMissing.Rd:21: file link 'is.atomic' in package 'base' does not exist and so has been treated as a topic anyNaN html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/anyNaN.Rd:17: file link 'is.atomic' in package 'base' does not exist and so has been treated as a topic asInteger html assert html checkAccess html checkArray html checkAtomic html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkAtomic.Rd:156: file link 'is.atomic' in package 'base' does not exist and so has been treated as a topic checkAtomicVector html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkAtomicVector.Rd:156: file link 'is.atomic' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkAtomicVector.Rd:156: file link 'is.vector' in package 'base' does not exist and so has been treated as a topic checkCharacter html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkCharacter.Rd:146: file link 'grepl' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkCharacter.Rd:150: file link 'grepl' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkCharacter.Rd:155: file link 'grepl' in package 'base' does not exist and so has been treated as a topic checkChoice html checkClass html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkClass.Rd:53: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkComplex html checkCount html checkDataFrame html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkDataFrame.Rd:142: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkDataTable html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkDataTable.Rd:162: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkDate html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkDate.Rd:175: file link 'Date' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkDate.Rd:114: file link 'Date' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkDate.Rd:117: file link 'Date' in package 'base' does not exist and so has been treated as a topic checkDirectoryExists html checkDisjunct html checkDouble html checkEnvironment html checkFALSE html checkFactor html checkFileExists html checkFlag html checkFormula html checkFunction html checkInt html checkInteger html checkIntegerish html checkList html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkList.Rd:121: file link 'inherits' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkList.Rd:187: file link 'is.list' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkList.Rd:187: file link 'pairlist' in package 'base' does not exist and so has been treated as a topic checkLogical html checkMatrix html checkMultiClass html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkMultiClass.Rd:38: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkNamed html checkNames html checkNull html checkNumber html checkNumeric html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkNumeric.Rd:207: file link 'is.numeric' in package 'base' does not exist and so has been treated as a topic checkOS html checkPOSIXct html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkPOSIXct.Rd:185: file link 'POSIXct' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkPOSIXct.Rd:121: file link 'Date' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkPOSIXct.Rd:124: file link 'Date' in package 'base' does not exist and so has been treated as a topic checkPathForOutput html checkR6 html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkR6.Rd:94: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkRaw html checkScalar html checkScalarNA html checkSetEqual html checkString html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkString.Rd:100: file link 'grepl' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkString.Rd:104: file link 'grepl' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkString.Rd:109: file link 'grepl' in package 'base' does not exist and so has been treated as a topic checkSubset html checkTRUE html checkTibble html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkTibble.Rd:142: file link 'inherits' in package 'base' does not exist and so has been treated as a topic checkVector html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/checkVector.Rd:100: file link 'is.vector' in package 'base' does not exist and so has been treated as a topic checkmate-package html coalesce html makeAssertion html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeAssertion.Rd:40: file link '.Call' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeAssertion.Rd:53: file link 'parent.frame' in package 'base' does not exist and so has been treated as a topic makeExpectation html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeExpectation.Rd:36: file link '.Call' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeExpectation.Rd:45: file link 'parent.frame' in package 'base' does not exist and so has been treated as a topic makeTest html Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeTest.Rd:35: file link 'isTRUE' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeTest.Rd:22: file link '.Call' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp2YtrBc/R.INSTALL1bf333699875/checkmate/man/makeTest.Rd:26: file link 'parent.frame' in package 'base' does not exist and so has been treated as a topic matchArg html qassert html qassertr html register_test_backend html vname html wf html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (checkmate) Making 'packages.html' ... done * installing *source* package 'miscTools' ... ** package 'miscTools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'miscTools' finding HTML links ... done coefTable html colMedians html compPlot html Rd warning: /tmp/RtmpBJyCuV/R.INSTALL1c9b3253a86c/miscTools/man/compPlot.Rd:18: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic ddnorm html Rd warning: /tmp/RtmpBJyCuV/R.INSTALL1c9b3253a86c/miscTools/man/ddnorm.Rd:30: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic insertCol html insertRow html margEff html miscTools-internal html nObs html nParam html quasiconcavity html rSquared html rowMedians html semidefiniteness html stdEr html sumKeepAttr html summarizeDF html symMatrix html triang html vecli html vecli2m html veclipos html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miscTools) Making 'packages.html' ... done * installing *source* package 'pcaPP' ... ** package 'pcaPP' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c L1Median_HoCr.cpp -o L1Median_HoCr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c L1Median_VardiZhang.cpp -o L1Median_VardiZhang.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c ML_meal.cpp -o ML_meal.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c ML_package.cpp -o ML_package.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c ML_passrng.cpp -o ML_passrng.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c PCAgrid.cpp -o PCAgrid.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c PCAproj.cpp -o PCAproj.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c R_meal.cpp -o R_meal.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c R_meal_BLAS.cpp -o R_meal_BLAS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c R_package.cpp -o R_package.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c cov.kendall.cpp -o cov.kendall.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c hess.cpp -o hess.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c l1median.cpp -o l1median.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c outSDo.cpp -o outSDo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c pcaPP.cpp -o pcaPP.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c pcaPP_init.c -o pcaPP_init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c qnn.cpp -o qnn.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_PACKAGE_FILE -I/usr/local/include -fpic -g -O2 -c smat.cpp -o smat.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o pcaPP.so L1Median_HoCr.o L1Median_VardiZhang.o ML_meal.o ML_package.o ML_passrng.o PCAgrid.o PCAproj.o R_meal.o R_meal_BLAS.o R_package.o cov.kendall.o hess.o l1median.o outSDo.o pcaPP.o pcaPP_init.o qnn.o smat.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-pcaPP/00new/pcaPP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pcaPP' finding HTML links ... done PCAgrid html PCAproj html PCdiagplot html Qn html ScaleAdv html cor.fk html covPC html covPCA html data.Zou html l1median html l1median_NLM html objplot html opt.TPO html plot.opt.TPO html plotcov html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaPP) Making 'packages.html' ... done * installing *source* package 'future' ... ** package 'future' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'future' finding HTML links ... done ClusterFuture-class html ConstantFuture-class html Future-class html FutureCondition html FutureGlobals html FutureResult html MulticoreFuture-class html MultiprocessFuture-class html UniprocessFuture-class html as_lecyer_cmrg_seed html backtrace html cluster html clusterExportSticky html find_references html future html future.options html futureOf html futures html getExpression html getGlobalsAndPackages html grapes-conditions-grapes html grapes-globals-grapes html grapes-label-grapes html grapes-lazy-grapes html grapes-plan-grapes html grapes-seed-grapes html grapes-stdout-grapes html grapes-tweak-grapes html make_rng_seeds html mandelbrot html multicore html multiprocess html multisession html nbrOfWorkers html nullcon html pid_exists html plan html private_length html re-exports html readImmediateConditions html remote html requestCore html resetWorkers html resolve html resolved html result html run html save_rds html sequential html sessionDetails html signalConditions html sticky_globals html tweak html usedCores html value html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (future) Making 'packages.html' ... done * installing *source* package 'raster' ... ** package 'raster' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RasterModule.cpp -o RasterModule.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c aggregate.cpp -o aggregate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bilinear.cpp -o bilinear.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c broom.cpp -o broom.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cellRowCol.cpp -o cellRowCol.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c clamp.cpp -o clamp.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c distance.cpp -o distance.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c edge.cpp -o edge.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c focal_fun.cpp -o focal_fun.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c focal_get.cpp -o focal_get.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c focal_sum.cpp -o focal_sum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c geodesic.c -o geodesic.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c getPolygons.cpp -o getPolygons.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c layerize.cpp -o layerize.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c memory.cpp -o memory.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c modal.cpp -o modal.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c ppmin.cpp -o ppmin.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c raster_aggregate.cpp -o raster_aggregate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c raster_distance.cpp -o raster_distance.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rasterize.cpp -o rasterize.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c reclass.cpp -o reclass.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c terrain.cpp -o terrain.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c util.cpp -o util.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c xyCell.cpp -o xyCell.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o raster.so RasterModule.o RcppExports.o aggregate.o bilinear.o broom.o cellRowCol.o clamp.o distance.o edge.o focal_fun.o focal_get.o focal_sum.o geodesic.o getPolygons.o layerize.o memory.o modal.o ppmin.o raster_aggregate.o raster_distance.o rasterize.o reclass.o terrain.o util.o xyCell.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-raster/00new/raster/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'brick' with signature 'x="kasc"': no definition for class "kasc" in method for 'brick' with signature 'x="grf"': no definition for class "grf" in method for 'brick' with signature 'x="SpatRaster"': no definition for class "SpatRaster" in method for 'coerce' with signature '"STFDF","RasterBrick"': no definition for class "STFDF" in method for 'coerce' with signature '"STSDF","RasterBrick"': no definition for class "STSDF" in method for 'coerce' with signature '"asc","RasterLayer"': no definition for class "asc" in method for 'coerce' with signature '"RasterLayer","asc"': no definition for class "asc" in method for 'coerce' with signature '"kasc","RasterBrick"': no definition for class "kasc" in method for 'coerce' with signature '"kasc","RasterStack"': no definition for class "kasc" in method for 'coerce' with signature '"kde","RasterLayer"': no definition for class "kde" in method for 'coerce' with signature '"grf","RasterBrick"': no definition for class "grf" in method for 'coerce' with signature '"grf","RasterLayer"': no definition for class "grf" Creating a generic function for 'ncol' from package 'base' in package 'raster' in method for 'extent' with signature 'x="bbox"': no definition for class "bbox" in method for 'extent' with signature 'x="sf"': no definition for class "sf" in method for 'extract' with signature 'x="Raster",y="sf"': no definition for class "sf" in method for 'mask' with signature 'x="Raster",mask="sf"': no definition for class "sf" in method for 'raster' with signature 'x="sf"': no definition for class "sf" in method for 'raster' with signature 'x="kasc"': no definition for class "kasc" in method for 'raster' with signature 'x="asc"': no definition for class "asc" in method for 'raster' with signature 'x="kde"': no definition for class "kde" in method for 'raster' with signature 'x="grf"': no definition for class "grf" in method for 'raster' with signature 'x="SpatRaster"': no definition for class "SpatRaster" in method for 'rasterize' with signature 'x="sf",y="Raster"': no definition for class "sf" Creating a generic function for 'rowSums' from package 'base' in package 'raster' Creating a generic function for 'colSums' from package 'base' in package 'raster' in method for 'setValues' with signature 'x="RasterLayerSparse"': no definition for class "RasterLayerSparse" in method for 'spplot' with signature 'obj="SpatRaster"': no definition for class "SpatRaster" in method for 'spplot' with signature 'obj="SpatVector"': no definition for class "SpatVector" in method for 'stack' with signature 'x="kasc"': no definition for class "kasc" in method for 'stack' with signature 'x="SpatRaster"': no definition for class "SpatRaster" ** help *** installing help indices converting help for package 'raster' finding HTML links ... done Arith-methods html Compare-methods html Extent-class html KML html Logic-methods html Math-methods html NAvalue html RGB html Raster-classes html Rcpp-classes html Summary-methods html addLayer html adjacent html aggregate html alignExtent html animate html approxNA html area html as.character html as.data.frame html as.list html as.logical-methods html as.matrix html as.raster html atan2 html autocor html bands html barplot html bind html blockSize html boundaries html boxplot html brick html buffer html calc html cellFrom html cellStats html cellsFromExtent html clamp html clearValues html click html clump html cluster html colortable html compare html compareCRS html contour html coordinates html corLocal html cover html crop html crosstab html cut html cv html dataType html datasource html density html dimensions html direction html disaggregate html distance html distanceFromPoints html draw html drawExtent html erase html extend html extension html extent html extract html finding level-2 HTML links ... done extractIndex html extremeValues html factor html filename html filledContour html flip html flowpath html focal html focalWeight html freq html gainoffset html geom html getData html getValues html getValuesBlock html getValuesFocal html gridDistance html hdrFiles html headtail html hillShade html hist html image html iniFile html init html interpolate html intersect html isLonLat html layerStats html layerize html localFun html mask html match html merge html metadata html modal html mosaic html movingFun html names html ncell html nlayers html origin html overlay html pairs html persp html plot html plotRGB html pointDistance html predict html programming html projectRaster html projection html properties html quantile html raster-package html raster html rasterFromCells html rasterFromXYZ html rasterOptions html rasterTmpFile html rasterToContour html rasterToPoints html rasterToPolygons html rasterize html readAll html reclassify html rectify html replacement html resample html resolution html rotate html rotated html round html roundExtent html rowFromCell html rowSums html sampleInt html sampleRandom html sampleRegular html sampleStratified html saveStack html scale html scalebar html select html setExtent html setMinMax html setValues html shapefile html shift html slopeAspect html spEasy html spplot html stack html stackApply html stackSelect html strech html subs html subset html summary html symdif html terrain html text html transpose html trim html union html unique html unstack html update html validCell html validNames html weighted.mean html which html which.minmax html writeFormats html writeRaster html writeValues html xyFromCell html zApply html zonal html zoom html zvalues html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (raster) Making 'packages.html' ... done * installing *source* package 'units' ... ** package 'units' successfully unpacked and MD5 sums checked ** using staged installation configure: units: 0.7-1 checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for error_at_line... yes checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for XML_ParserCreate in -lexpat... yes checking udunits2.h usability... no checking udunits2.h presence... no checking for udunits2.h... no checking udunits2/udunits2.h usability... yes checking udunits2/udunits2.h presence... yes checking for udunits2/udunits2.h... yes checking for ut_read_xml in -ludunits2... yes configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=1 -I/usr/local/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DUDUNITS2_DIR=1 -I/usr/local/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c udunits.cpp -o udunits.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o units.so RcppExports.o udunits.o -lexpat -lexpat -ludunits2 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-units/00new/units/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'units' finding HTML links ... done Math.units html Ops.units html as_difftime html boxplot.units html deparse_unit html drop_units html hist.units html install_conversion_constant html install_symbolic_unit html install_unit html keep_units html load_units_xml html mixed_units html plot.units html seq.units html ud_are_convertible html unitless html units html units_options html valid_udunits html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (units) Making 'packages.html' ... done * installing *source* package 'gdata' ... ** package 'gdata' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gdata' finding HTML links ... done Args html ConvertMedUnits html MedUnits html ans html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/ans.Rd:14: file link '.Last.value' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/ans.Rd:20: file link '.Last.value' in package 'base' does not exist and so has been treated as a topic bindData html case html cbindX html centerText html combine html drop.levels html duplicated2 html elem html env html first html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/first.Rd:34: file link 'tail' in package 'utils' does not exist and so has been treated as a topic frameApply html gdata-defunct html gdata-package html getDateTimePart html humanReadable html installXLSXsupport html interleave html is.what html keep html left html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/left.Rd:27: file link 'tail' in package 'utils' does not exist and so has been treated as a topic ll html ls.funs html mapLevels html matchcols html mv html nPairs html nobs html object.size html read.xls html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/read.xls.Rd:66: file link 'read.csv' in package 'utils' does not exist and so has been treated as a topic rename.vars html reorder html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/reorder.Rd:56: file link 'reorder' in package 'stats' does not exist and so has been treated as a topic resample html sheetCount html startsWith html trim html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/trim.Rd:37: file link 'sub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/trim.Rd:37: file link 'gsub' in package 'base' does not exist and so has been treated as a topic trimSum html unknown html unmatrix html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/unmatrix.Rd:23: file link 'as.vector' in package 'base' does not exist and so has been treated as a topic update.list html upperTriangle html Rd warning: /tmp/Rtmpv8gHng/R.INSTALL22764392cd34/gdata/man/upperTriangle.Rd:47: file link 'upper.tri' in package 'base' does not exist and so has been treated as a topic wideByFactor html write.fwf html xlsFormats html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gdata) Making 'packages.html' ... done * installing *source* package 'diffobj' ... ** package 'diffobj' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-diffobj/00new/diffobj/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'diffobj' finding HTML links ... done AlignThreshold-class html Diff-class html Extract_PaletteOfStyles html Pager html PaletteOfStyles-class html Rdiff_chr html Style html StyleFuns html StyleSummary html StyleText html any-Diff-method html as.character-DiffSummary-method html as.character-MyersMbaSes-method html auto_context html console_lines html diffChr html finding level-2 HTML links ... done diffCsv html diffDeparse html diffFile html diffObj html diffPrint html diffStr html diff_myers html diffobj-package html diffobj_s4method_doc html diffobj_set_def_opts html dimnames-PaletteOfStyles-method html extract-Diff-method html finalizeHtml html gdo html guides html has_Rdiff html make_blocking html nchar_html html pager_is_less html par_frame html ses html show-DiffSummary-method html show-PaletteOfStyles-method html show-Style-method html strip_hz_control html summary-Diff-method html summary-MyersMbaSes-method html summary-PaletteOfStyles-method html tag_f html trim html view_or_browse html webfiles html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffobj) Making 'packages.html' ... done * installing *source* package 'xts' ... ** package 'xts' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c add_class.c -o add_class.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c any.c -o any.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c attr.c -o attr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c binsearch.c -o binsearch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c coredata.c -o coredata.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c dimnames.c -o dimnames.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c endpoints.c -o endpoints.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c extract_col.c -o extract_col.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c isOrdered.c -o isOrdered.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c isXts.c -o isXts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c merge.c -o merge.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c na.c -o na.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c period_apply.c -o period_apply.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c period_arithmetic.c -o period_arithmetic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c period_quantile.c -o period_quantile.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c rbind.c -o rbind.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c rollfun.c -o rollfun.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c runSum.c -o runSum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c startofyear.c -o startofyear.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c subset.c -o subset.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c subset.old.c -o subset.old.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c toperiod.c -o toperiod.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c totalcols.c -o totalcols.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c tryXts.c -o tryXts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.0.3/lib/R/library/zoo/include' -I/usr/local/include -fpic -g -O2 -c unique.time.c -o unique.time.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o merge.o na.o period_apply.o period_arithmetic.o period_quantile.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xts/00new/xts/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xts' finding HTML links ... done CLASS html addEventLines html addLegend html addPanel html addPolygon html addSeries html align.time html apply.monthly html as.environment html as.xts html as.xts.methods html axTicksByTime html coredata.xts html diff html dimnames.xts html endpoints html first html firstof html isOrdered html make.index.unique html merge html na.locf.xts html ndays html parseISO8601 html period.apply html period.max html period.min html period.prod html period.sum html periodicity html plot.xts html rbind.xts html sample.data html split html Rd warning: /tmp/RtmpbUuHX4/R.INSTALL237c520b2123/xts/man/split.Rd:58: file link 'split.zoo' in package 'zoo' does not exist and so has been treated as a topic subset.xts html tclass html timeBased html timeBasedSeq html to.period html tzone html window.xts html xts-internals html xts-package html xts html xtsAPI html xtsAttributes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xts) Making 'packages.html' ... done * installing *source* package 'lifecycle' ... ** package 'lifecycle' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lifecycle' finding HTML links ... done badge html deprecate_soft html deprecated html expect_deprecated html last_warnings html lifecycle-package html signal_experimental html signal_stage html verbosity html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) Making 'packages.html' ... done * installing *source* package 'flexmix' ... ** package 'flexmix' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flexmix' finding HTML links ... done AIC-methods html BIC-methods html BregFix html EIC html ExLinear html ExNPreg html ExNclus html FLXMCdist1 html FLXMCfactanal html FLXMCmvcombi html FLXMCmvpois html FLXMRcondlogit html FLXMRglmnet html FLXMRlmer html FLXMRlmmc html FLXMRmgcv html FLXMRmultinom html FLXMRrobglm html FLXMRziglm html FLXP-class html FLXbclust html FLXcomponent-class html FLXconcomitant html FLXcontrol-class html FLXdist-class html FLXdist html FLXfit html FLXglm html FLXglmFix html FLXmclust html FLXmodel-class html FLXnested-class html ICL html KLdiv html Lapply-methods html Mehta html NregFix html betablocker html bioChemists html boot html candy html dmft html fabricfault html fitted html flexmix-class html flexmix-internal html flexmix html group html logLik-methods html patent html plot-methods html plotEll html posterior html refit html relabel html rflexmix html salmonellaTA98 html seizure html stepFlexmix html tribolium html trypanosome html whiskey html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flexmix) Making 'packages.html' ... done ERROR: dependency 'gmp' is not available for package 'partitions' * removing '/opt/R/4.0.3/lib/R/library/partitions' * installing *source* package 'Rdpack' ... ** package 'Rdpack' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rdpack' finding HTML links ... done RStudio_reprompt html Rd_combo html Rdapply html Rdo2Rdf html Rdo_append_argument html Rdo_collect_metadata html Rdo_empty_sections html Rdo_fetch html Rdo_flatinsert html Rdo_get_argument_names html Rdo_get_insert_pos html Rdo_get_item_labels html Rdo_insert html Rdo_insert_element html Rdo_is_newline html Rdo_locate html Rdo_locate_leaves html Rdo_macro html Rdo_modify html Rdo_modify_simple html Rdo_piecetag html Rdo_remove_srcref html Rdo_reparse html Rdo_sections html Rdo_set_section html Rdo_show html Rdo_tag html Rdo_tags html Rdo_which html Rdpack-package html Rdpack_bibstyles html Rdreplace_section html S4formals html append_to_Rd_list html bibentry_key html c_Rd html char2Rdpiece html compare_usage1 html deparse_usage html ereprompt html format_funusage html get_bibentries html get_sig_text html get_usage_text html insert_all_ref html insert_ref html inspect_Rd html inspect_args html inspect_signatures html inspect_slots html inspect_usage html list_Rd html makeVignetteReference html parse_Rdname html parse_Rdpiece html parse_Rdtext html parse_pairlist html parse_text html parse_usage_text html predefined html promptPackageSexpr html promptUsage html rdo_text_restore html rebib html reprompt html set_Rdpack_bibstyle html update_aliases_tmp html viewRd html zzasym_compare html zzbsdup html zzcapture_promptany html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdpack) Making 'packages.html' ... done * installing *source* package 'igraph' ... ** package 'igraph' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for rintf... yes checking for finite... yes checking for expm1... yes checking for rint... yes checking for log2... yes checking for logbl... yes checking for snprintf... yes checking for log1p... yes checking for round... yes checking for fmin... yes checking for stpcpy... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether stpcpy is declared... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking net/if.h usability... yes checking net/if.h presence... yes checking for net/if.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking net/if_dl.h usability... no checking net/if_dl.h presence... no checking for net/if_dl.h... no checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking for struct sockaddr.sa_len... no checking for xml2-config... /usr/bin/xml2-config checking for xmlSAXUserParseFile in -lxml2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for __gmpz_add in -lgmp... no checking for glp_read_mps in -lglpk... no configure: creating ./config.status config.status: creating src/Makevars.tmp config.status: creating src/Makevars config.status: creating src/config.h ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c AMD/Source/amd.f -o AMD/Source/amd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_1.c -o AMD/Source/amd_1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_2.c -o AMD/Source/amd_2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_aat.c -o AMD/Source/amd_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_control.c -o AMD/Source/amd_control.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_defaults.c -o AMD/Source/amd_defaults.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_dump.c -o AMD/Source/amd_dump.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_global.c -o AMD/Source/amd_global.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_info.c -o AMD/Source/amd_info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_order.c -o AMD/Source/amd_order.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_post_tree.c -o AMD/Source/amd_post_tree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_postorder.c -o AMD/Source/amd_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_preprocess.c -o AMD/Source/amd_preprocess.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c AMD/Source/amd_valid.c -o AMD/Source/amd_valid.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c AMD/Source/amdbar.f -o AMD/Source/amdbar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Check/cholmod_check.c -o CHOLMOD/Check/cholmod_check.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Check/cholmod_read.c -o CHOLMOD/Check/cholmod_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Check/cholmod_write.c -o CHOLMOD/Check/cholmod_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_amd.c -o CHOLMOD/Cholesky/cholmod_amd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_analyze.c -o CHOLMOD/Cholesky/cholmod_analyze.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_colamd.c -o CHOLMOD/Cholesky/cholmod_colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_etree.c -o CHOLMOD/Cholesky/cholmod_etree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_factorize.c -o CHOLMOD/Cholesky/cholmod_factorize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_postorder.c -o CHOLMOD/Cholesky/cholmod_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_rcond.c -o CHOLMOD/Cholesky/cholmod_rcond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_resymbol.c -o CHOLMOD/Cholesky/cholmod_resymbol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_rowcolcounts.c -o CHOLMOD/Cholesky/cholmod_rowcolcounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_rowfac.c -o CHOLMOD/Cholesky/cholmod_rowfac.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_solve.c -o CHOLMOD/Cholesky/cholmod_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Cholesky/cholmod_spsolve.c -o CHOLMOD/Cholesky/cholmod_spsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_aat.c -o CHOLMOD/Core/cholmod_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_add.c -o CHOLMOD/Core/cholmod_add.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_band.c -o CHOLMOD/Core/cholmod_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_change_factor.c -o CHOLMOD/Core/cholmod_change_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_common.c -o CHOLMOD/Core/cholmod_common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_complex.c -o CHOLMOD/Core/cholmod_complex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_copy.c -o CHOLMOD/Core/cholmod_copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_dense.c -o CHOLMOD/Core/cholmod_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_error.c -o CHOLMOD/Core/cholmod_error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_factor.c -o CHOLMOD/Core/cholmod_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_memory.c -o CHOLMOD/Core/cholmod_memory.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_sparse.c -o CHOLMOD/Core/cholmod_sparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_transpose.c -o CHOLMOD/Core/cholmod_transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_triplet.c -o CHOLMOD/Core/cholmod_triplet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Core/cholmod_version.c -o CHOLMOD/Core/cholmod_version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_drop.c -o CHOLMOD/MatrixOps/cholmod_drop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_horzcat.c -o CHOLMOD/MatrixOps/cholmod_horzcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_norm.c -o CHOLMOD/MatrixOps/cholmod_norm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_scale.c -o CHOLMOD/MatrixOps/cholmod_scale.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_sdmult.c -o CHOLMOD/MatrixOps/cholmod_sdmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_ssmult.c -o CHOLMOD/MatrixOps/cholmod_ssmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_submatrix.c -o CHOLMOD/MatrixOps/cholmod_submatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_symmetry.c -o CHOLMOD/MatrixOps/cholmod_symmetry.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/MatrixOps/cholmod_vertcat.c -o CHOLMOD/MatrixOps/cholmod_vertcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Modify/cholmod_rowadd.c -o CHOLMOD/Modify/cholmod_rowadd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Modify/cholmod_rowdel.c -o CHOLMOD/Modify/cholmod_rowdel.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Modify/cholmod_updown.c -o CHOLMOD/Modify/cholmod_updown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Partition/cholmod_camd.c -o CHOLMOD/Partition/cholmod_camd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Partition/cholmod_ccolamd.c -o CHOLMOD/Partition/cholmod_ccolamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Partition/cholmod_csymamd.c -o CHOLMOD/Partition/cholmod_csymamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Partition/cholmod_metis.c -o CHOLMOD/Partition/cholmod_metis.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Partition/cholmod_nesdis.c -o CHOLMOD/Partition/cholmod_nesdis.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Supernodal/cholmod_super_numeric.c -o CHOLMOD/Supernodal/cholmod_super_numeric.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Supernodal/cholmod_super_solve.c -o CHOLMOD/Supernodal/cholmod_super_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c CHOLMOD/Supernodal/cholmod_super_symbolic.c -o CHOLMOD/Supernodal/cholmod_super_symbolic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c COLAMD/Source/colamd.c -o COLAMD/Source/colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c COLAMD/Source/colamd_global.c -o COLAMD/Source/colamd_global.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c DensityGrid.cpp -o DensityGrid.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c DensityGrid_3d.cpp -o DensityGrid_3d.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c NetDataTypes.cpp -o NetDataTypes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c NetRoutines.cpp -o NetRoutines.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c SuiteSparse_config/SuiteSparse_config.c -o SuiteSparse_config/SuiteSparse_config.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c adjlist.c -o adjlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c arpack.c -o arpack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c array.c -o array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c atlas.c -o atlas.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c attributes.c -o attributes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c basic_query.c -o basic_query.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c bfgs.c -o bfgs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c bigint.c -o bigint.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c bignum.c -o bignum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c bipartite.c -o bipartite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c blas.c -o blas.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss.cc -o bliss.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/bliss_heap.cc -o bliss/bliss_heap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/defs.cc -o bliss/defs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/graph.cc -o bliss/graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/orbit.cc -o bliss/orbit.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/partition.cc -o bliss/partition.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/uintseqhash.cc -o bliss/uintseqhash.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c bliss/utils.cc -o bliss/utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cattributes.c -o cattributes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c centrality.c -o centrality.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cliquer/cliquer.c -o cliquer/cliquer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cliquer/cliquer_graph.c -o cliquer/cliquer_graph.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cliquer/reorder.c -o cliquer/reorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cliques.c -o cliques.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c clustertool.cpp -o clustertool.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cocitation.c -o cocitation.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cohesive_blocks.c -o cohesive_blocks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c coloring.c -o coloring.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c community.c -o community.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c complex.c -o complex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c components.c -o components.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c conversion.c -o conversion.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cores.c -o cores.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_add.c -o cs/cs_add.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_amd.c -o cs/cs_amd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_chol.c -o cs/cs_chol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_cholsol.c -o cs/cs_cholsol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_compress.c -o cs/cs_compress.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_counts.c -o cs/cs_counts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_cumsum.c -o cs/cs_cumsum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_dfs.c -o cs/cs_dfs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_dmperm.c -o cs/cs_dmperm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_droptol.c -o cs/cs_droptol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_dropzeros.c -o cs/cs_dropzeros.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_dupl.c -o cs/cs_dupl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_entry.c -o cs/cs_entry.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_ereach.c -o cs/cs_ereach.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_etree.c -o cs/cs_etree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_fkeep.c -o cs/cs_fkeep.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_gaxpy.c -o cs/cs_gaxpy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_happly.c -o cs/cs_happly.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_house.c -o cs/cs_house.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_ipvec.c -o cs/cs_ipvec.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_leaf.c -o cs/cs_leaf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_load.c -o cs/cs_load.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_lsolve.c -o cs/cs_lsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_ltsolve.c -o cs/cs_ltsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_lu.c -o cs/cs_lu.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_lusol.c -o cs/cs_lusol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_malloc.c -o cs/cs_malloc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_maxtrans.c -o cs/cs_maxtrans.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_multiply.c -o cs/cs_multiply.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_norm.c -o cs/cs_norm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_permute.c -o cs/cs_permute.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_pinv.c -o cs/cs_pinv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_post.c -o cs/cs_post.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_print.c -o cs/cs_print.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_pvec.c -o cs/cs_pvec.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_qr.c -o cs/cs_qr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_qrsol.c -o cs/cs_qrsol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_randperm.c -o cs/cs_randperm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_reach.c -o cs/cs_reach.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_scatter.c -o cs/cs_scatter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_scc.c -o cs/cs_scc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_schol.c -o cs/cs_schol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_spsolve.c -o cs/cs_spsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_sqr.c -o cs/cs_sqr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_symperm.c -o cs/cs_symperm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_tdfs.c -o cs/cs_tdfs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_transpose.c -o cs/cs_transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_updown.c -o cs/cs_updown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_usolve.c -o cs/cs_usolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_util.c -o cs/cs_util.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c cs/cs_utsolve.c -o cs/cs_utsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c decomposition.c -o decomposition.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c distances.c -o distances.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c dotproduct.c -o dotproduct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c dqueue.c -o dqueue.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c drl_graph.cpp -o drl_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c drl_graph_3d.cpp -o drl_graph_3d.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c drl_layout.cpp -o drl_layout.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c drl_layout_3d.cpp -o drl_layout_3d.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c drl_parse.cpp -o drl_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c eigen.c -o eigen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c embedding.c -o embedding.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c fast_community.c -o fast_community.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c feedback_arc_set.c -o feedback_arc_set.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c flow.c -o flow.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-dl-lexer.c -o foreign-dl-lexer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-dl-parser.c -o foreign-dl-parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-gml-lexer.c -o foreign-gml-lexer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-gml-parser.c -o foreign-gml-parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-graphml.c -o foreign-graphml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-lgl-lexer.c -o foreign-lgl-lexer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-lgl-parser.c -o foreign-lgl-parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-ncol-lexer.c -o foreign-ncol-lexer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-ncol-parser.c -o foreign-ncol-parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-pajek-lexer.c -o foreign-pajek-lexer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign-pajek-parser.c -o foreign-pajek-parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c foreign.c -o foreign.o foreign.c: In function 'igraph_i_gml_tostring': foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] return p; ^ foreign.c:1029:8: note: declared here char tmp[256]; ^~~ foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] return p; ^ foreign.c:1029:8: note: declared here char tmp[256]; ^~~ foreign.c:1050:10: warning: function may return address of local variable [-Wreturn-local-addr] return p; ^ foreign.c:1029:8: note: declared here char tmp[256]; ^~~ gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c forestfire.c -o forestfire.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c fortran_intrinsics.c -o fortran_intrinsics.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c games.c -o games.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_box_list.cpp -o gengraph_box_list.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_degree_sequence.cpp -o gengraph_degree_sequence.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_graph_molloy_hash.cpp -o gengraph_graph_molloy_hash.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_graph_molloy_optimized.cpp -o gengraph_graph_molloy_optimized.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_mr-connected.cpp -o gengraph_mr-connected.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_powerlaw.cpp -o gengraph_powerlaw.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c gengraph_random.cpp -o gengraph_random.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c glet.c -o glet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c glpk_support.c -o glpk_support.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c gml_tree.c -o gml_tree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c hacks.c -o hacks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c heap.c -o heap.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_buckets.c -o igraph_buckets.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_cliquer.c -o igraph_cliquer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_error.c -o igraph_error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_estack.c -o igraph_estack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_fixed_vectorlist.c -o igraph_fixed_vectorlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_grid.c -o igraph_grid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_hashtable.c -o igraph_hashtable.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_heap.c -o igraph_heap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c igraph_hrg.cc -o igraph_hrg.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c igraph_hrg_types.cc -o igraph_hrg_types.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_marked_queue.c -o igraph_marked_queue.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_psumtree.c -o igraph_psumtree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_set.c -o igraph_set.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_stack.c -o igraph_stack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_strvector.c -o igraph_strvector.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c igraph_trie.c -o igraph_trie.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c infomap.cc -o infomap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c infomap_FlowGraph.cc -o infomap_FlowGraph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c infomap_Greedy.cc -o infomap_Greedy.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c infomap_Node.cc -o infomap_Node.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c interrupt.c -o interrupt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c iterators.c -o iterators.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c lad.c -o lad.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c lapack.c -o lapack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c layout.c -o layout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c layout_dh.c -o layout_dh.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c layout_fr.c -o layout_fr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c layout_gem.c -o layout_gem.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c layout_kk.c -o layout_kk.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c lsap.c -o lsap.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c matching.c -o matching.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c math.c -o math.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c matrix.c -o matrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c maximal_cliques.c -o maximal_cliques.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c memory.c -o memory.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c microscopic_update.c -o microscopic_update.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c mixing.c -o mixing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c motifs.c -o motifs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c operators.c -o operators.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c optimal_modularity.c -o optimal_modularity.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c other.c -o other.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c paths.c -o paths.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/error.c -o plfit/error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/gss.c -o plfit/gss.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/kolmogorov.c -o plfit/kolmogorov.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/lbfgs.c -o plfit/lbfgs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/options.c -o plfit/options.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/plfit.c -o plfit/plfit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c plfit/zeta.c -o plfit/zeta.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c pottsmodel_2.cpp -o pottsmodel_2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c progress.c -o progress.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack.cpp -o prpack.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_base_graph.cpp -o prpack/prpack_base_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_igraph_graph.cpp -o prpack/prpack_igraph_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_preprocessed_ge_graph.cpp -o prpack/prpack_preprocessed_ge_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_preprocessed_gs_graph.cpp -o prpack/prpack_preprocessed_gs_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_preprocessed_scc_graph.cpp -o prpack/prpack_preprocessed_scc_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_preprocessed_schur_graph.cpp -o prpack/prpack_preprocessed_schur_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_result.cpp -o prpack/prpack_result.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_solver.cpp -o prpack/prpack_solver.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c prpack/prpack_utils.cpp -o prpack/prpack_utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c qsort.c -o qsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c qsort_r.c -o qsort_r.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c random.c -o random.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c random_walk.c -o random_walk.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c sbm.c -o sbm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scan.c -o scan.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg.c -o scg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg_approximate_methods.c -o scg_approximate_methods.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg_exact_scg.c -o scg_exact_scg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg_kmeans.c -o scg_kmeans.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg_optimal_method.c -o scg_optimal_method.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c scg_utils.c -o scg_utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c separators.c -o separators.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c sir.c -o sir.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c spanning_trees.c -o spanning_trees.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c sparsemat.c -o sparsemat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c spectral_properties.c -o spectral_properties.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c spmatrix.c -o spmatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c st-cuts.c -o st-cuts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c statusbar.c -o statusbar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c structural_properties.c -o structural_properties.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c structure_generators.c -o structure_generators.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c sugiyama.c -o sugiyama.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c topology.c -o topology.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c triangles.c -o triangles.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c type_indexededgelist.c -o type_indexededgelist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c types.c -o types.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c vector.c -o vector.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c vector_ptr.c -o vector_ptr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c version.c -o version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c visitors.c -o visitors.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c walktrap.cpp -o walktrap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c walktrap_communities.cpp -o walktrap_communities.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c walktrap_graph.cpp -o walktrap_graph.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c walktrap_heap.cpp -o walktrap_heap.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c zeroin.c -o zeroin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dgetv0.f -o dgetv0.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dlaqrb.f -o dlaqrb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dmout.f -o dmout.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dnaitr.f -o dnaitr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dnapps.f -o dnapps.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dnaup2.f -o dnaup2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dnaupd.f -o dnaupd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dnconv.f -o dnconv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dneigh.f -o dneigh.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dneupd.f -o dneupd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dngets.f -o dngets.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsaitr.f -o dsaitr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsapps.f -o dsapps.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsaup2.f -o dsaup2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsaupd.f -o dsaupd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsconv.f -o dsconv.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dseigt.f -o dseigt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsesrt.f -o dsesrt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dseupd.f -o dseupd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsgets.f -o dsgets.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsortc.f -o dsortc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsortr.f -o dsortr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dstatn.f -o dstatn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dstats.f -o dstats.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dstqrb.f -o dstqrb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dvout.f -o dvout.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c ivout.f -o ivout.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c second.f -o second.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c wrap.f -o wrap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Color.cpp -o simpleraytracer/Color.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Light.cpp -o simpleraytracer/Light.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Point.cpp -o simpleraytracer/Point.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/RIgraphRay.cpp -o simpleraytracer/RIgraphRay.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Ray.cpp -o simpleraytracer/Ray.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/RayTracer.cpp -o simpleraytracer/RayTracer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/RayVector.cpp -o simpleraytracer/RayVector.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Shape.cpp -o simpleraytracer/Shape.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Sphere.cpp -o simpleraytracer/Sphere.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/Triangle.cpp -o simpleraytracer/Triangle.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -DIGRAPH_THREAD_LOCAL=/**/ -DNDEBUG -Iprpack -I. -Iinclude -DPRPACK_IGRAPH_SUPPORT -fpic -g -O2 -c simpleraytracer/unit_limiter.cpp -o simpleraytracer/unit_limiter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/R.c -o uuid/R.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/clear.c -o uuid/clear.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/compare.c -o uuid/compare.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/copy.c -o uuid/copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/gen_uuid.c -o uuid/gen_uuid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/isnull.c -o uuid/isnull.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/pack.c -o uuid/pack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/parse.c -o uuid/parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/unpack.c -o uuid/unpack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c uuid/unparse.c -o uuid/unparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c rinterface.c -o rinterface.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c rinterface_extra.c -o rinterface_extra.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSparse_config -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT -DPACKAGE_VERSION=\"1.2.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fpic -g -O2 -c lazyeval.c -o lazyeval.o WARNING: Error writing log line to trace: transform: short internal buffer installing to /opt/R/4.0.3/lib/R/library/00LOCK-igraph/00new/igraph/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'igraph' finding HTML links ... done E html V html aaa-igraph-package html add_edges html add_layout_ html add_vertices html adjacent_vertices html all_simple_paths html alpha_centrality html are_adjacent html arpack html articulation_points html as.directed html as.igraph html as_adj_list html as_adjacency_matrix html as_edgelist html as_graphnel html as_ids html as_incidence_matrix html as_long_data_frame html as_membership html assortativity html authority_score html automorphisms html betweenness html bfs html biconnected_components html bipartite_mapping html bipartite_projection html c.igraph.es html c.igraph.vs html canonical_permutation html categorical_pal html centr_betw html centr_betw_tmax html centr_clo html centr_clo_tmax html centr_degree html centr_degree_tmax html centr_eigen html centr_eigen_tmax html centralize html cliques html closeness html cluster_edge_betweenness html cluster_fast_greedy html cluster_infomap html cluster_label_prop html cluster_leading_eigen html Rd warning: /tmp/Rtmpa1E9kH/R.INSTALL25bd219c78f7/igraph/man/cluster_leading_eigen.Rd:120: file link 'as.dendrogram' in package 'stats' does not exist and so has been treated as a topic cluster_louvain html cluster_optimal html cluster_spinglass html cluster_walktrap html cocitation html cohesive_blocks html communities html compare html complementer html component_wise html components html compose html consensus_tree html console html constraint html contract html convex_hull html coreness html count_isomorphisms html count_motifs html count_subgraph_isomorphisms html count_triangles html curve_multiple html decompose html degree html delete_edge_attr html delete_edges html delete_graph_attr html delete_vertex_attr html delete_vertices html dfs html diameter html difference html difference.igraph html difference.igraph.es html difference.igraph.vs html dim_select html disjoint_union html distances html diverging_pal html diversity html dominator_tree html dyad_census html each_edge html eccentricity html edge html edge_attr-set html edge_attr html edge_attr_names html edge_connectivity html edge_density html ego html eigen_centrality html embed_adjacency_matrix html embed_laplacian_matrix html ends html erdos.renyi.game html fit_hrg html fit_power_law html get.edge.ids html girth html gorder html graph_ html graph_attr-set html graph_attr html graph_attr_names html graph_from_adj_list html graph_from_adjacency_matrix html graph_from_atlas html graph_from_data_frame html graph_from_edgelist html graph_from_graphdb html graph_from_graphnel html graph_from_incidence_matrix html graph_from_isomorphism_class html graph_from_lcf html graph_from_literal html graph_id html graph_version html graphlet_basis html groups html gsize html head_of html head_print html hrg-methods html hrg html hrg_tree html hub_score html identical_graphs html igraph-attribute-combination html igraph-dollar html igraph-es-attributes html igraph-es-indexing html igraph-es-indexing2 html igraph-minus html igraph-vs-attributes html igraph-vs-indexing html igraph-vs-indexing2 html igraph_demo html igraph_options html igraph_test html igraph_version html incident html incident_edges html indent_print html intersection html intersection.igraph html intersection.igraph.es html intersection.igraph.vs html is_chordal html is_dag html is_degseq html is_directed html is_graphical html is_igraph html is_min_separator html is_named html is_printer_callback html is_separator html is_weighted html isomorphic html isomorphism_class html isomorphisms html ivs html keeping_degseq html knn html laplacian_matrix html layout.deprecated html layout.fruchterman.reingold.grid html layout.spring html layout.svd html layout_ html layout_as_bipartite html layout_as_star html layout_as_tree html layout_in_circle html layout_nicely html layout_on_grid html layout_on_sphere html layout_randomly html layout_with_dh html layout_with_drl html layout_with_fr html layout_with_gem html layout_with_graphopt html layout_with_kk html layout_with_lgl html layout_with_mds html layout_with_sugiyama html local_scan html make_ html make_bipartite_graph html make_chordal_ring html make_clusters html make_de_bruijn_graph html make_empty_graph html make_full_bipartite_graph html make_full_citation_graph html make_full_graph html make_graph html make_kautz_graph html make_lattice html make_line_graph html make_ring html make_star html make_tree html match_vertices html matching html max_cardinality html max_flow html merge_coords html min_cut html min_separators html min_st_separators html modularity.igraph html motifs html mst html neighbors html nexus html norm_coords html normalize html page_rank html path html permute html pipe html plot.common html Rd warning: /tmp/Rtmpa1E9kH/R.INSTALL25bd219c78f7/igraph/man/plot.common.Rd:13: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpa1E9kH/R.INSTALL25bd219c78f7/igraph/man/plot.common.Rd:184: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpa1E9kH/R.INSTALL25bd219c78f7/igraph/man/plot.common.Rd:186: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpa1E9kH/R.INSTALL25bd219c78f7/igraph/man/plot.common.Rd:217: file link 'tkfont.create' in package 'tcltk' does not exist and so has been treated as a topic plot.igraph html plot.sir html plot_dendrogram.communities html plot_dendrogram.igraphHRG html plus-.igraph html power_centrality html predict_edges html print.igraph html print.igraph.es html print.igraph.vs html print.igraphHRG html print.igraphHRGConsensus html printer_callback html r_pal html radius html random_walk html read_graph html reciprocity html rep.igraph html rev.igraph.es html rev.igraph.vs html rewire html rglplot html running_mean html sample_ html sample_bipartite html sample_correlated_gnp html sample_correlated_gnp_pair html sample_degseq html sample_dirichlet html sample_dot_product html sample_fitness html sample_fitness_pl html sample_forestfire html sample_gnm html sample_gnp html sample_grg html sample_growing html sample_hierarchical_sbm html sample_hrg html sample_islands html sample_k_regular html sample_last_cit html sample_motifs html sample_pa html sample_pa_age html 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vertex_connectivity html which_multiple html which_mutual html with_edge_ html with_graph_ html with_igraph_opt html with_vertex_ html without_attr html without_loops html without_multiples html write_graph html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (igraph) Making 'packages.html' ... done * installing *source* package 'RSiena' ... ** package 'RSiena' successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ -std=gnu++11 accepts -g... (cached) yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes configure: creating ./config.status config.status: creating src/Makevars.tmp config.status: creating src/Makevars -------------------------------------------------- Configuration for RSiena ================ cppflags: -I/usr/local/include cxxflags: -g -O2 libs: -------------------------------------------------- ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c siena07internals.cpp -o siena07internals.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c siena07models.cpp -o siena07models.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c siena07setup.cpp -o siena07setup.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c siena07utilities.cpp -o siena07utilities.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ChangingDyadicCovariate.cpp -o data/ChangingDyadicCovariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ConstantDyadicCovariate.cpp -o data/ConstantDyadicCovariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ContinuousLongitudinalData.cpp -o data/ContinuousLongitudinalData.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/OneModeNetworkLongitudinalData.cpp -o data/OneModeNetworkLongitudinalData.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/DyadicCovariateValueIterator.cpp -o data/DyadicCovariateValueIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/LongitudinalData.cpp -o data/LongitudinalData.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/NetworkLongitudinalData.cpp -o data/NetworkLongitudinalData.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ExogenousEvent.cpp -o data/ExogenousEvent.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/Covariate.cpp -o data/Covariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/DyadicCovariate.cpp -o data/DyadicCovariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/BehaviorLongitudinalData.cpp -o data/BehaviorLongitudinalData.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ChangingCovariate.cpp -o data/ChangingCovariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/Data.cpp -o data/Data.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/NetworkConstraint.cpp -o data/NetworkConstraint.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ActorSet.cpp -o data/ActorSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c data/ConstantCovariate.cpp -o data/ConstantCovariate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/BehaviorChange.cpp -o model/ml/BehaviorChange.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/Chain.cpp -o model/ml/Chain.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/NetworkChange.cpp -o model/ml/NetworkChange.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/MiniStep.cpp -o model/ml/MiniStep.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/Option.cpp -o model/ml/Option.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/ml/MLSimulation.cpp -o model/ml/MLSimulation.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/DiffusionEffectValueTable.cpp -o model/variables/DiffusionEffectValueTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/EffectValueTable.cpp -o model/variables/EffectValueTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/BehaviorVariable.cpp -o model/variables/BehaviorVariable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/NetworkVariable.cpp -o model/variables/NetworkVariable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/DependentVariable.cpp -o model/variables/DependentVariable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/EpochSimulation.cpp -o model/EpochSimulation.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutOutDegreeAssortativityEffect.cpp -o model/effects/OutOutDegreeAssortativityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ReciprocatedSimilarityEffect.cpp -o model/effects/ReciprocatedSimilarityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageInAlterEffect.cpp -o model/effects/AverageInAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/NetworkEffect.cpp -o model/effects/NetworkEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/EffectFactory.cpp -o model/effects/EffectFactory.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DyadicCovariateDependentNetworkEffect.cpp -o model/effects/DyadicCovariateDependentNetworkEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InteractionCovariateEffect.cpp -o model/effects/InteractionCovariateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ReciprocalDegreeBehaviorEffect.cpp -o model/effects/ReciprocalDegreeBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutdegreeActivityEffect.cpp -o model/effects/OutdegreeActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveTriadsEffect.cpp -o model/effects/TransitiveTriadsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/RecipdegreePopularityEffect.cpp -o model/effects/RecipdegreePopularityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SimilarityEffect.cpp -o model/effects/SimilarityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SimilarityIndegreeEffect.cpp -o model/effects/SimilarityIndegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IsolateNetEffect.cpp -o model/effects/IsolateNetEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DenseTriadsBehaviorEffect.cpp -o model/effects/DenseTriadsBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageAlterInDist2Effect.cpp -o model/effects/AverageAlterInDist2Effect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageAlterEffect.cpp -o model/effects/AverageAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TruncatedOutdegreeEffect.cpp -o model/effects/TruncatedOutdegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TruncatedOutdegreeEffect2.cpp -o model/effects/TruncatedOutdegreeEffect2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DyadicCovariateAndNetworkBehaviorEffect.cpp -o model/effects/DyadicCovariateAndNetworkBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutdegreeActivitySqrtEffect.cpp -o model/effects/OutdegreeActivitySqrtEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/LinearShapeEffect.cpp -o model/effects/LinearShapeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ConstantEffect.cpp -o model/effects/ConstantEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/Effect.cpp -o model/effects/Effect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InStructuralEquivalenceEffect.cpp -o model/effects/InStructuralEquivalenceEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IsolateEffect.cpp -o model/effects/IsolateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/HomCovariateActivityEffect.cpp -o model/effects/HomCovariateActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/NetworkDependentBehaviorEffect.cpp -o model/effects/NetworkDependentBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/BetweennessEffect.cpp -o model/effects/BetweennessEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/BothDegreesEffect.cpp -o model/effects/BothDegreesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateIndirectTiesEffect.cpp -o model/effects/CovariateIndirectTiesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/QuadraticShapeEffect.cpp -o model/effects/QuadraticShapeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ThresholdShapeEffect.cpp -o model/effects/ThresholdShapeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SameCovariateActivityEffect.cpp -o model/effects/SameCovariateActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IndegreeEffect.cpp -o model/effects/IndegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersInDist2CovariateAverageEffect.cpp -o model/effects/AltersInDist2CovariateAverageEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageAlterDist2Effect.cpp -o model/effects/AverageAlterDist2Effect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DyadicCovariateAvAltEffect.cpp -o model/effects/DyadicCovariateAvAltEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/PopularityAlterEffect.cpp -o model/effects/PopularityAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/WXXClosureEffect.cpp -o model/effects/WXXClosureEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateAvSimEffect.cpp -o model/effects/AltersCovariateAvSimEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/XWXClosureEffect.cpp -o model/effects/XWXClosureEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IndegreePopularityEffect.cpp -o model/effects/IndegreePopularityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateAvAltEffect.cpp -o model/effects/AltersCovariateAvAltEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateDiffEgoEffect.cpp -o model/effects/CovariateDiffEgoEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InverseSquaredOutdegreeEffect.cpp -o model/effects/InverseSquaredOutdegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InverseOutdegreeEffect.cpp -o model/effects/InverseOutdegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateAndNetworkBehaviorEffect.cpp -o model/effects/CovariateAndNetworkBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateAlterEffect.cpp -o model/effects/CovariateAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SimilarityTransitiveTripletsEffect.cpp -o model/effects/SimilarityTransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SameCovariateTransitiveTripletsEffect.cpp -o model/effects/SameCovariateTransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AlterCovariateActivityEffect.cpp -o model/effects/AlterCovariateActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IndegreeActivityEffect.cpp -o model/effects/IndegreeActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/HomCovariateTransitiveTripletsEffect.cpp -o model/effects/HomCovariateTransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/HigherCovariateEffect.cpp -o model/effects/HigherCovariateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SimilarityWEffect.cpp -o model/effects/SimilarityWEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SameCovariateEffect.cpp -o model/effects/SameCovariateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersDist2CovariateAverageEffect.cpp -o model/effects/AltersDist2CovariateAverageEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DistanceTwoEffect.cpp -o model/effects/DistanceTwoEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DoubleInPopEffect.cpp -o model/effects/DoubleInPopEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DoubleRecDegreeBehaviorEffect.cpp -o model/effects/DoubleRecDegreeBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutdegreePopularityEffect.cpp -o model/effects/OutdegreePopularityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageGroupEffect.cpp -o model/effects/AverageGroupEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateMinimumEffect.cpp -o model/effects/AltersCovariateMinimumEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateMaximumEffect.cpp -o model/effects/AltersCovariateMaximumEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateTransitiveTripletsEffect.cpp -o model/effects/CovariateTransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SameCovariateTransitiveReciprocatedTripletsEffect.cpp -o model/effects/SameCovariateTransitiveReciprocatedTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/ProductFunction.cpp -o model/effects/generic/ProductFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/InTieFunction.cpp -o model/effects/generic/InTieFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDegreeFunction.cpp -o model/effects/generic/CovariateDegreeFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateInStarFunction.cpp -o model/effects/generic/SameCovariateInStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/DifferentCovariateInStarFunction.cpp -o model/effects/generic/DifferentCovariateInStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/EqualCovariatePredicate.cpp -o model/effects/generic/EqualCovariatePredicate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/HomCovariateMixedTwoPathFunction.cpp -o model/effects/generic/HomCovariateMixedTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDistance2SimilarityNetworkFunction.cpp -o model/effects/generic/CovariateDistance2SimilarityNetworkFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateTwoPathFunction.cpp -o model/effects/generic/SameCovariateTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OutStarFunction.cpp -o model/effects/generic/OutStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/InDegreeFunction.cpp -o model/effects/generic/InDegreeFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/EgoInDegreeFunction.cpp -o model/effects/generic/EgoInDegreeFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OutTieFunction.cpp -o model/effects/generic/OutTieFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDistance2InAlterNetworkFunction.cpp -o model/effects/generic/CovariateDistance2InAlterNetworkFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/DifferenceFunction.cpp -o model/effects/generic/DifferenceFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDistance2EgoAltSimNetworkFunction.cpp -o model/effects/generic/CovariateDistance2EgoAltSimNetworkFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateMixedNetworkAlterFunction.cpp -o model/effects/generic/CovariateMixedNetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/DyadicCovariateMixedNetworkAlterFunction.cpp -o model/effects/generic/DyadicCovariateMixedNetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/InJaccardFunction.cpp -o model/effects/generic/InJaccardFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDistance2AlterNetworkFunction.cpp -o model/effects/generic/CovariateDistance2AlterNetworkFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OutActDistance2Function.cpp -o model/effects/generic/OutActDistance2Function.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/TwoStepFunction.cpp -o model/effects/generic/TwoStepFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/TwoPathFunction.cpp -o model/effects/generic/TwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/GenericNetworkEffect.cpp -o model/effects/generic/GenericNetworkEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/MissingCovariatePredicate.cpp -o model/effects/generic/MissingCovariatePredicate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariatePredicate.cpp -o model/effects/generic/CovariatePredicate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/IntAlterFunction.cpp -o model/effects/generic/IntAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateInTiesFunction.cpp -o model/effects/generic/SameCovariateInTiesFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateOutTiesFunction.cpp -o model/effects/generic/SameCovariateOutTiesFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/BetweennessFunction.cpp -o model/effects/generic/BetweennessFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/EgoOutDegreeFunction.cpp -o model/effects/generic/EgoOutDegreeFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OutJaccardFunction.cpp -o model/effects/generic/OutJaccardFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateOutStarFunction.cpp -o model/effects/generic/SameCovariateOutStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/DifferentCovariateOutStarFunction.cpp -o model/effects/generic/DifferentCovariateOutStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SumFunction.cpp -o model/effects/generic/SumFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/EgoFunction.cpp -o model/effects/generic/EgoFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/ReciprocatedTwoPathFunction.cpp -o model/effects/generic/ReciprocatedTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/ConditionalFunction.cpp -o model/effects/generic/ConditionalFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/MixedThreeCyclesFunction.cpp -o model/effects/generic/MixedThreeCyclesFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateDistance2NetworkFunction.cpp -o model/effects/generic/CovariateDistance2NetworkFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/AlterFunction.cpp -o model/effects/generic/AlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/IntSqrtFunction.cpp -o model/effects/generic/IntSqrtFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/MixedNetworkAlterFunction.cpp -o model/effects/generic/MixedNetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OutDegreeFunction.cpp -o model/effects/generic/OutDegreeFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/SameCovariateMixedTwoPathFunction.cpp -o model/effects/generic/SameCovariateMixedTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/InStarsTimesDegreesFunction.cpp -o model/effects/generic/InStarsTimesDegreesFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/ConstantFunction.cpp -o model/effects/generic/ConstantFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/MixedTwoStepFunction.cpp -o model/effects/generic/MixedTwoStepFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/WeightedMixedTwoPathFunction.cpp -o model/effects/generic/WeightedMixedTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/ReverseTwoPathFunction.cpp -o model/effects/generic/ReverseTwoPathFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/AlterPredicate.cpp -o model/effects/generic/AlterPredicate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/CovariateNetworkAlterFunction.cpp -o model/effects/generic/CovariateNetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/GwespFunction.cpp -o model/effects/generic/GwespFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/NetworkAlterFunction.cpp -o model/effects/generic/NetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/DoubleOutActFunction.cpp -o model/effects/generic/DoubleOutActFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/OneModeNetworkAlterFunction.cpp -o model/effects/generic/OneModeNetworkAlterFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/generic/InStarFunction.cpp -o model/effects/generic/InStarFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveMediatedTripletsEffect.cpp -o model/effects/TransitiveMediatedTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveTiesEffect.cpp -o model/effects/TransitiveTiesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ReciprocityEffect.cpp -o model/effects/ReciprocityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/MaxAlterEffect.cpp -o model/effects/MaxAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DenseTriadsSimilarityEffect.cpp -o model/effects/DenseTriadsSimilarityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/RecipdegreeActivityEffect.cpp -o model/effects/RecipdegreeActivityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveTripletsEffect.cpp -o model/effects/TransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutdegreeEffect.cpp -o model/effects/OutdegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateEgoSquaredEffect.cpp -o model/effects/CovariateEgoSquaredEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateDependentNetworkEffect.cpp -o model/effects/CovariateDependentNetworkEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/GwdspEffect.cpp -o model/effects/GwdspEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/WWXClosureEffect.cpp -o model/effects/WWXClosureEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateDependentBehaviorEffect.cpp -o model/effects/CovariateDependentBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutInDegreeAssortativityEffect.cpp -o model/effects/OutInDegreeAssortativityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DyadicCovariateReciprocityEffect.cpp -o model/effects/DyadicCovariateReciprocityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AntiIsolateEffect.cpp -o model/effects/AntiIsolateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/NetworkInteractionEffect.cpp -o model/effects/NetworkInteractionEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InInDegreeAssortativityEffect.cpp -o model/effects/InInDegreeAssortativityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateAverageEffect.cpp -o model/effects/AltersCovariateAverageEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DyadicCovariateMainEffect.cpp -o model/effects/DyadicCovariateMainEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/FourCyclesEffect.cpp -o model/effects/FourCyclesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SameCovariateFourCyclesEffect.cpp -o model/effects/SameCovariateFourCyclesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateEgoAlterEffect.cpp -o model/effects/CovariateEgoAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InIsolateDegreeEffect.cpp -o model/effects/InIsolateDegreeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ThreeCyclesEffect.cpp -o model/effects/ThreeCyclesEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TwoNetworkDependentBehaviorEffect.cpp -o model/effects/TwoNetworkDependentBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/BalanceEffect.cpp -o model/effects/BalanceEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateEgoEffect.cpp -o model/effects/CovariateEgoEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateEgoDiffEffect.cpp -o model/effects/CovariateEgoDiffEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DenseTriadsEffect.cpp -o model/effects/DenseTriadsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/JumpCovariateTransitiveTripletsEffect.cpp -o model/effects/JumpCovariateTransitiveTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageReciprocatedAlterEffect.cpp -o model/effects/AverageReciprocatedAlterEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DoubleDegreeBehaviorEffect.cpp -o model/effects/DoubleDegreeBehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/StructuralRateEffect.cpp -o model/effects/StructuralRateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/BehaviorInteractionEffect.cpp -o model/effects/BehaviorInteractionEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveReciprocatedTriplets2Effect.cpp -o model/effects/TransitiveReciprocatedTriplets2Effect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateSimilarityEffect.cpp -o model/effects/CovariateSimilarityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InAltersCovariateAverageEffect.cpp -o model/effects/InAltersCovariateAverageEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/BehaviorEffect.cpp -o model/effects/BehaviorEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/MixedNetworkEffect.cpp -o model/effects/MixedNetworkEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/TransitiveReciprocatedTripletsEffect.cpp -o model/effects/TransitiveReciprocatedTripletsEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DiffusionRateEffect.cpp -o model/effects/DiffusionRateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IsolatePopEffect.cpp -o model/effects/IsolatePopEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DensityEffect.cpp -o model/effects/DensityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InOutDegreeAssortativityEffect.cpp -o model/effects/InOutDegreeAssortativityEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateContrastEffect.cpp -o model/effects/CovariateContrastEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateDiffEffect.cpp -o model/effects/CovariateDiffEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/DoubleOutActEffect.cpp -o model/effects/DoubleOutActEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/MainCovariateContinuousEffect.cpp -o model/effects/MainCovariateContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/MainCovariateEffect.cpp -o model/effects/MainCovariateEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageAlterContinuousEffect.cpp -o model/effects/AverageAlterContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/CovariateDependentContinuousEffect.cpp -o model/effects/CovariateDependentContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IsolateOutContinuousEffect.cpp -o model/effects/IsolateOutContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/MaxAlterContinuousEffect.cpp -o model/effects/MaxAlterContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ReciprocalDegreeContinuousEffect.cpp -o model/effects/ReciprocalDegreeContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/IndegreeContinuousEffect.cpp -o model/effects/IndegreeContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AltersCovariateTotSimEffect.cpp -o model/effects/AltersCovariateTotSimEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/EffectInfo.cpp -o model/EffectInfo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/OutdegreeContinuousEffect.cpp -o model/effects/OutdegreeContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/State.cpp -o model/State.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/PermittedChangeFilter.cpp -o model/filters/PermittedChangeFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/LowerFilter.cpp -o model/filters/LowerFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/DisjointFilter.cpp -o model/filters/DisjointFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/NetworkDependentFilter.cpp -o model/filters/NetworkDependentFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/HigherFilter.cpp -o model/filters/HigherFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/filters/AtLeastOneFilter.cpp -o model/filters/AtLeastOneFilter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/Function.cpp -o model/Function.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/Model.cpp -o model/Model.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/NetworkDependentContinuousEffect.cpp -o model/effects/NetworkDependentContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/SdeSimulation.cpp -o model/SdeSimulation.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/ComposableSetting.cpp -o model/settings/ComposableSetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/DyadicSetting.cpp -o model/settings/DyadicSetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/GeneralSetting.cpp -o model/settings/GeneralSetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/MeetingSetting.cpp -o model/settings/MeetingSetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/PrimarySetting.cpp -o model/settings/PrimarySetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/Setting.cpp -o model/settings/Setting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/SettingInfo.cpp -o model/settings/SettingInfo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/SettingsFactory.cpp -o model/settings/SettingsFactory.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/settings/UniversalSetting.cpp -o model/settings/UniversalSetting.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/SimulationActorSet.cpp -o model/SimulationActorSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/StatisticCalculator.cpp -o model/StatisticCalculator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/EgocentricConfigurationTable.cpp -o model/tables/EgocentricConfigurationTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/NetworkCache.cpp -o model/tables/NetworkCache.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/ConfigurationTable.cpp -o model/tables/ConfigurationTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/MixedConfigurationTable.cpp -o model/tables/MixedConfigurationTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/Cache.cpp -o model/tables/Cache.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/BetweennessTable.cpp -o model/tables/BetweennessTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/TwoPathTable.cpp -o model/tables/TwoPathTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/TwoNetworkCache.cpp -o model/tables/TwoNetworkCache.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/CriticalInStarTable.cpp -o model/tables/CriticalInStarTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/MixedTwoPathTable.cpp -o model/tables/MixedTwoPathTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/tables/MixedEgocentricConfigurationTable.cpp -o model/tables/MixedEgocentricConfigurationTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/NetworkUtils.cpp -o network/NetworkUtils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/UnionNeighborIterator.cpp -o network/UnionNeighborIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/CommonNeighborIterator.cpp -o network/CommonNeighborIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/IncidentTieIterator.cpp -o network/IncidentTieIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/iterators/AdvUnionTieIterator.cpp -o network/iterators/AdvUnionTieIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/iterators/GeneralTieIterator.cpp -o network/iterators/GeneralTieIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/layers/DistanceTwoLayer.cpp -o network/layers/DistanceTwoLayer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/layers/PrimaryLayer.cpp -o network/layers/PrimaryLayer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/Network.cpp -o network/Network.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/OneModeNetwork.cpp -o network/OneModeNetwork.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c network/TieIterator.cpp -o network/TieIterator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c utils/Utils.cpp -o utils/Utils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c utils/NamedObject.cpp -o utils/NamedObject.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c utils/Random.cpp -o utils/Random.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c utils/SqrtTable.cpp -o utils/SqrtTable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/ContinuousEffect.cpp -o model/effects/ContinuousEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/variables/ContinuousVariable.cpp -o model/variables/ContinuousVariable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/WienerEffect.cpp -o model/effects/WienerEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/FeedbackEffect.cpp -o model/effects/FeedbackEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/InterceptEffect.cpp -o model/effects/InterceptEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SettingSizeEffect.cpp -o model/effects/SettingSizeEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/AverageGroupEgoEffect.cpp -o model/effects/AverageGroupEgoEffect.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/local/include -fpic -g -O2 -c model/effects/SettingsNetworkEffect.cpp -o model/effects/SettingsNetworkEffect.o WARNING: Error writing log line to trace: transform: short internal buffer installing to /opt/R/4.0.3/lib/R/library/00LOCK-RSiena/00new/RSiena/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RSiena' finding HTML links ... done RSiena-package html Wald html allEffects html coCovar html coDyadCovar html edit.sienaEffects html effectsDocumentation html funnelPlot html getEffects html hn3401 html includeEffects html includeGMoMStatistics html includeInteraction html includeTimeDummy html iwlsm html maxlikefn html n3401 html plot.sienaTimeTest html print.sienaEffects html print.sienaMeta html print.sienaTest html print01Report html s50 html s501 html s502 html s503 html s50a html s50s html setEffect html siena07 html siena08 html sienaAlgorithmCreate html sienaCompositionChange html sienaDataConstraint html sienaDataCreate html sienaDependent html sienaFit html sienaGOF-auxiliary html sienaGOF html sienaGroupCreate html sienaNodeSet html sienaRI html sienaTimeTest html simstats0c html summary.iwlsm html tmp3 html tmp4 html updateTheta html varCovar html varDyadCovar html xtable html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSiena) Making 'packages.html' ... done * installing *source* package 'statnet.common' ... ** package 'statnet.common' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logspace_utils.c -o logspace_utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o statnet.common.so init.o logspace_utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-statnet.common/00new/statnet.common/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'statnet.common' finding HTML links ... done ERRVL html Rd warning: /tmp/RtmpQ16zP1/R.INSTALL35b837f70608/statnet.common/man/ERRVL.Rd:48: file link 'inherits' in package 'base' does not exist and so has been treated as a topic NVL html Rd warning: /tmp/RtmpQ16zP1/R.INSTALL35b837f70608/statnet.common/man/NVL.Rd:114: file link 'is.null' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpQ16zP1/R.INSTALL35b837f70608/statnet.common/man/NVL.Rd:114: file link 'if' in package 'base' does not exist and so has been treated as a topic all_identical html check.control.class html compress_rows html compress_rows.data.frame html control.list.accessor html Rd warning: /tmp/RtmpQ16zP1/R.INSTALL35b837f70608/statnet.common/man/control.list.accessor.Rd:24: file link 'getElement' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpQ16zP1/R.INSTALL35b837f70608/statnet.common/man/control.list.accessor.Rd:24: file link '$' in package 'base' does not exist and so has been treated as a topic control.remap html deInf html deprecation-utilities html despace html diff.control.list html forkTimeout html formula.utilities html logspace.utils html mcmc-utilities html finding level-2 HTML links ... done message_print html once html opttest html paste.and html persistEval html print.control.list html rle-reexport html set.control.class html sort.data.frame html split.array html statnet.cite html statnetStartupMessage html sweep_cols.matrix html trim_env html ult html unwhich html vector.namesmatch html wmatrix html wmatrix_weights html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statnet.common) Making 'packages.html' ... done * installing *source* package 'foreach' ... ** package 'foreach' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreach' finding HTML links ... done foreach-ext html foreach-package html foreach html getDoParWorkers html getDoSeqWorkers html registerDoSEQ html setDoPar html setDoSeq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreach) Making 'packages.html' ... done * installing *source* package 'plyr' ... ** package 'plyr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c loop_apply.c -o loop_apply.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c split-numeric.cpp -o split-numeric.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-plyr/00new/plyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plyr' finding HTML links ... done a_ply html aaply html adply html alply html amv_dim html amv_dimnames html arrange html as.data.frame.function html as.list.split html as.quoted html baseball html colwise html compact html count html create_progress_bar html d_ply html daply html ddply html defaults html desc html dims html dlply html each html empty html eval.quoted html failwith html get-split html here html id html id_var html idata.frame html indexed_array html indexed_df html is.discrete html is.formula html isplit2 html join html join.keys html join_all html l_ply html laply html ldply html liply html list_to_array html list_to_dataframe html list_to_vector html llply html loop_apply html m_ply html maply html mapvalues html match_df html mdply html mlply html mutate html name_rows html names.quoted html nunique html ozone html plyr-deprecated html plyr html print.quoted html print.split html progress_none html progress_text html progress_time html progress_tk html progress_win html quickdf html quoted html r_ply html raply html rbind.fill html rbind.fill.matrix html Rd warning: /tmp/RtmpN4ASBT/R.INSTALL36be14f91e17/plyr/man/rbind.fill.matrix.Rd:48: file link 'rbind' in package 'base' does not exist and so has been treated as a topic rdply html reduce_dim html rename html revalue html rlply html round_any html splat html split_indices html split_labels html splitter_a html splitter_d html strip_splits html summarise html take html true html try_default html tryapply html unrowname html vaggregate html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plyr) Making 'packages.html' ... done * installing *source* package 'ModelMetrics' ... ** package 'ModelMetrics' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c auc_.cpp -o auc_.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c confusionMatrix_.cpp -o confusionMatrix_.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c error.cpp -o error.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gini_.cpp -o gini_.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c logLoss_.cpp -o logLoss_.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ModelMetrics.so RcppExports.o auc_.o confusionMatrix_.o error.o gini_.o logLoss_.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ModelMetrics/00new/ModelMetrics/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ModelMetrics' finding HTML links ... done auc html brier html ce html confusionMatrix html f1Score html fScore html gini html kappa html logLoss html mae html mauc html mcc html mlogLoss html mse html msle html npv html ppv html recall html rmse html rmsle html testDF html tnr html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ModelMetrics) Making 'packages.html' ... done * installing *source* package 'rex' ... ** package 'rex' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rex' finding HTML links ... done as.regex html capture html character_class html character_class_escape html counts html escape html group html lookarounds html not html or html re_matches html re_substitutes html regex html register_shortcuts html rex html rex_mode html shortcuts html single_shortcuts html wildcards html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rex) Making 'packages.html' ... done * installing *source* package 'pander' ... ** package 'pander' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pandoc.cpp -o pandoc.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o pander.so RcppExports.o helpers.o pandoc.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-pander/00new/pander/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pander' finding HTML links ... done Pandoc-class html Pandoc.brew html Pandoc.convert html add.blank.lines html add.lattice.grid html add.lattice.xsubticks html add.minor.ticks html add.significance.stars html brew html cache.off html check_caption html check_digits html coef_mat html emphasize.rows html eval.msgs html evals html evalsOptions html get.alignment html get.caption html get.emphasize html get.storage html has.rownames html multitable html openFileInOS html p html pander.Arima html pander.CrossTable html pander.Date html pander.NULL html pander.POSIXct html pander.POSIXlt html pander html pander.anova html pander.aov html pander.aovlist html pander.call html pander.cast_df html pander.character html pander.clogit html pander.coxph html pander.cph html pander.data.frame html pander.data.table html pander.default html pander.density html pander.describe html pander.ets html pander.evals html pander.factor html pander.formula html pander.ftable html pander.function html pander.glm html pander.glm.rms html pander.gtable html pander.htest html pander.image html pander.irts html pander.list html pander.lm html pander.lme html pander.logical html pander.lrm html pander.manova html pander.matrix html pander.microbenchmark html pander.name html pander.nls html pander.numeric html pander.ols html pander.orm html pander.polr html pander.prcomp html pander.randomForest html pander.rapport html pander.rlm html pander.sessionInfo html pander.smooth.spline html pander.stat.table html pander.summary.aov html pander.summary.aovlist html pander.summary.glm html pander.summary.lm html pander.summary.lme html pander.summary.manova html pander.summary.nls html pander.summary.polr html pander.summary.prcomp html pander.summary.rms html pander.summary.survreg html pander.summary.table html pander.survdiff html pander.survfit html pander.survreg html pander.table html pander.tabular html pander.ts html pander.vector html pander.zoo html panderOptions html pander_return html pandoc.date.return html pandoc.emphasis.return html pandoc.footnote.return html pandoc.formula.return html pandoc.header.return html pandoc.horizontal.rule.return html pandoc.image.return html pandoc.indent html pandoc.link.return html pandoc.list.return html pandoc.p.return html pandoc.strikeout.return html pandoc.strong.return html pandoc.table.return html pandoc.title.return html pandoc.verbatim.return html redraw.recordedplot html redrawPlot html remove.extra.newlines html repChar html set.alignment html set.caption html splitLine html trim.spaces html wrap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pander) Making 'packages.html' ... done * installing *source* package 'lubridate' ... ** package 'lubridate' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/zone_info_source.cc -o cctz/src/zone_info_source.o ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o ./cctz/src/zone_info_source.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c update.cpp -o update.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c datetime.c -o datetime.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c period.c -o period.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tparse.c -o tparse.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lubridate/00new/lubridate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lubridate' finding HTML links ... done DateCoercion html DateTimeUpdate html Deprecated html Duration-class html Interval-class html Period-class html Timespan-class html am html as.duration html as.interval html as.period html as_date html cyclic_encoding html date html date_decimal html date_utils html day html days_in_month html decimal_date html dst html duration html fit_to_timeline html force_tz html format_ISO8601 html format_ISO8601_precision_check html guess_formats html hidden_aliases html hms html hour html interval html is.difftime html is.instant html is.timespan html lakers html leap_year html local_time html lubridate-package html make_datetime html make_difftime html minute html month html mplus html now html origin html parse_date_time html period html period_to_seconds html posix_utils html pretty_dates html quarter html reclass_date html reclass_timespan html reexports html rollbackward html round_date html second html stamp html time_length html timespan html tz html week html with_tz html within-interval html year html ymd html ymd_hms html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (lubridate) Making 'packages.html' ... done * installing *source* package 'dreamerr' ... ** package 'dreamerr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dreamerr' finding HTML links ... done check_arg html dreamerr-package html enumerate_items html fit_screen html fsignif html ifsingle html n_times html package_stats html plural html setDreamerr_check html setDreamerr_dev.mode html set_check html set_up html sfill html stop_up html validate_dots html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dreamerr) Making 'packages.html' ... done * installing *source* package 'latticeExtra' ... ** package 'latticeExtra' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'latticeExtra' finding HTML links ... done EastAuClimate html SeatacWeather html USAge html USCancerRates html ancestry html as.layer html biocAccess html c.trellis html combineLimits html custom.theme html dendrogramGrob html doubleYScale html ecdfplot html ggplot2like.theme html gvhd10 html horizonplot html layer html mapplot html marginal.plot html panel.2dsmoother html panel.3dmisc html panel.ellipse html panel.key html panel.lmlineq html panel.qqmath.tails html panel.quantile html panel.scaleArrow html panel.segplot html panel.smoother html panel.tskernel html panel.voronoi html panel.xblocks html panel.xyarea html panel.xyimage html postdoc html resizePanels html rootogram html scale.components html segplot html theEconomist.theme html tileplot html useOuterStrips html xyplot.stl html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (latticeExtra) Making 'packages.html' ... done * installing *source* package 'gridExtra' ... ** package 'gridExtra' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gridExtra' finding HTML links ... done arrangeGrob html bind html combine html gridExtra-package html ngonGrob html tableGrob html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridExtra) Making 'packages.html' ... done * installing *source* package 'htmltools' ... ** package 'htmltools' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-htmltools/00new/htmltools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'htmltools' finding HTML links ... done HTML html as.tags html browsable html builder html capturePlot html copyDependencyToDir html css html defaultPngDevice html findDependencies html htmlDependencies html htmlDependency html htmlEscape html htmlPreserve html htmlTemplate html html_print html include html knitr_methods html makeDependencyRelative html parseCssColors html plotTag html print.html html renderDependencies html renderDocument html renderTags html resolveDependencies html save_html html singleton html singleton_tools html subtractDependencies html suppressDependencies html tag html tagFunction html urlEncodePath html validateCssUnit html withTags html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) Making 'packages.html' ... done * installing *source* package 'randtoolbox' ... ** package 'randtoolbox' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for inttypes.h... (cached) yes checking whether byte ordering is bigendian... no checking size of unsigned long long... 8 configure: creating ./config.status config.status: creating src/config.h config.status: src/config.h is unchanged ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c LowDiscrepancy-halton.c -o LowDiscrepancy-halton.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c LowDiscrepancy-sobol.c -o LowDiscrepancy-sobol.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c LowDiscrepancy.f -o LowDiscrepancy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SFMT.c -o SFMT.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c congruRand.c -o congruRand.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c knuthTAOCP2002.c -o knuthTAOCP2002.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mt19937ar.c -o mt19937ar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c randtoolbox.c -o randtoolbox.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runifInterface.c -o runifInterface.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c testrng.c -o testrng.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c version.c -o version.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o randtoolbox.so LowDiscrepancy-halton.o LowDiscrepancy-sobol.o LowDiscrepancy.o SFMT.o congruRand.o init.o knuthTAOCP2002.o mt19937ar.o randtoolbox.o runifInterface.o testrng.o version.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-randtoolbox/00new/randtoolbox/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'randtoolbox' finding HTML links ... done auxfun html colltest html colltestsparse html freqtest html gaptest html get.primes html getWELLState html ordertest html overall-doc html pokertest html pseudoRNG html quasiRNG html rngWELLScriptR html runifInterface html serialtest html sobol-test-func html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randtoolbox) Making 'packages.html' ... done * installing *source* package 'RcppArmadillo' ... ** package 'RcppArmadillo' successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ -std=gnu++11 accepts -g... (cached) yes checking whether we have a suitable tempdir... /tmp checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking LAPACK_LIBS... R-supplied partial LAPACK found configure: WARNING: Some complex-valued LAPACK functions may not be available configure: creating ./config.status config.status: creating inst/include/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c fastLm.cpp -o fastLm.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RcppArmadillo' finding HTML links ... done RcppArmadillo-package html RcppArmadillo.package.skeleton html armadillo_set_seed html armadillo_set_seed_random html armadillo_version html fastLm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppArmadillo) Making 'packages.html' ... done * installing *source* package 'highr' ... ** package 'highr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'highr' finding HTML links ... done hi_andre html hilight html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highr) Making 'packages.html' ... done * installing *source* package 'markdown' ... ** package 'markdown' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-markdown/00new/markdown/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'markdown' finding HTML links ... done markdown html markdownExtensions html markdownHTMLOptions html markdownToHTML html registeredRenderers html renderMarkdown html rendererExists html rendererOutputType html rpubsUpload html smartypants html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (markdown) Making 'packages.html' ... done * installing *source* package 'multicool' ... ** package 'multicool' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c compositions.cpp -o compositions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c multicool.cpp -o multicool.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o multicool.so RcppExports.o compositions.o multicool.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-multicool/00new/multicool/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'multicool' finding HTML links ... done Bell html Stirling2 html allPerm html genComp html initMC html multinom html nextPerm html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multicool) Making 'packages.html' ... done * installing *source* package 'plot3D' ... ** package 'plot3D' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: no DISPLAY variable so Tk is not available ** help *** installing help indices converting help for package 'plot3D' finding HTML links ... done Image html ImageOcean html Oxsat html arrows3D html colorkey html colors html contour3D html image3D html mesh html persp3D html perspbox html plot3D html plotdev html scatter html slice3D html finding level-2 HTML links ... done surf3D html trans3D html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: no DISPLAY variable so Tk is not available ** testing if installed package can be loaded from final location Warning: no DISPLAY variable so Tk is not available ** testing if installed package keeps a record of temporary installation path * DONE (plot3D) Making 'packages.html' ... done * installing *source* package 'mnormt' ... ** package 'mnormt' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c biv-nt.f -o biv-nt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mnormt_init.c -o mnormt_init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sadmvnt.f -o sadmvnt.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tvpack.f -o tvpack.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mnormt.so biv-nt.o mnormt_init.o sadmvnt.o tvpack.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mnormt/00new/mnormt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mnormt' finding HTML links ... done mnorm html mnormt-package html mom.mtruncnorm html mom2cum html mt html mtruncnorm html mtrunct html pd.solve html recintab html sample_Mardia_measures html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mnormt) Making 'packages.html' ... done * installing *source* package 'minqa' ... ** package 'minqa' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c altmov.f -o altmov.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bigden.f -o bigden.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c biglag.f -o biglag.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bobyqa.f -o bobyqa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bobyqb.f -o bobyqb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lagmax.f -o lagmax.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c minqa.cpp -o minqa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c newuoa.f -o newuoa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c newuob.f -o newuob.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c prelim.f -o prelim.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rescue.f -o rescue.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c trsapp.f -o trsapp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c trsbox.f -o trsbox.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c trstep.f -o trstep.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c uobyqa.f -o uobyqa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c uobyqb.f -o uobyqb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c update.f -o update.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c updatebobyqa.f -o updatebobyqa.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-minqa/00new/minqa/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'minqa' finding HTML links ... done bobyqa html newuoa html uobyqa html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minqa) Making 'packages.html' ... done * installing *source* package 'RcppEigen' ... ** package 'RcppEigen' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppEigen.cpp -o RcppEigen.o In file included from ../inst/include/Eigen/Core:397, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from ../inst/include/Eigen/Core:377, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/SparseCore:37, from ../inst/include/Eigen/Sparse:26, from ../inst/include/RcppEigenForward.h:31, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': ../inst/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' ../inst/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' ../inst/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppEigen.cpp:22: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from ../inst/include/Eigen/Core:397, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from ../inst/include/Eigen/Core:377, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/SparseCore:37, from ../inst/include/Eigen/Sparse:26, from ../inst/include/RcppEigenForward.h:31, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': ../inst/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' ../inst/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' ../inst/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from RcppExports.cpp:4: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c fastLm.cpp -o fastLm.o In file included from ../inst/include/Eigen/Core:397, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ ../inst/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from ../inst/include/Eigen/Core:377, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ ../inst/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' ../inst/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' ../inst/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/SparseCore:37, from ../inst/include/Eigen/Sparse:26, from ../inst/include/RcppEigenForward.h:31, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': ../inst/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' ../inst/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' ../inst/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here ../inst/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' fastLm.h:45:21: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' fastLm.h:45:21: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:68:124: required from 'class Eigen::ColPivHouseholderQR >' fastLm.h:48:42: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:438:19: required from 'class Eigen::ColPivHouseholderQR >' fastLm.h:48:42: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' fastLm.h:53:16: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' fastLm.h:54:16: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' fastLm.h:67:74: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' fastLm.cpp:47:44: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' fastLm.cpp:60:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Array >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Array > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, Eigen::Array > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Array >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, Eigen::Array > >' fastLm.cpp:64:24: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 0, Eigen::Stride<0, 0> > >' fastLm.cpp:70:29: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl >, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 0, Eigen::Stride<0, 0> >, Eigen::Matrix, 0>' fastLm.cpp:93:23: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>' fastLm.cpp:94:52: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 2>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 2>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, -1, -1, false>, 2>, Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, -1, -1, false>, 2>, Eigen::Matrix >' fastLm.cpp:95:38: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1> >' ../inst/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>' fastLm.cpp:95:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>' fastLm.cpp:95:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >' fastLm.cpp:100:42: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' fastLm.cpp:102:17: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Block, -1, 1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Block, -1, 1, false>, 0>' fastLm.cpp:102:61: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Matrix, 2>' fastLm.cpp:103:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::internal::member_norm, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::internal::member_norm, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::internal::member_norm, 1> >' ../inst/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl >, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' fastLm.cpp:123:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' fastLm.cpp:123:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 1>, Eigen::Matrix >' fastLm.cpp:125:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0> >' ../inst/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>' fastLm.cpp:125:63: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 0>' fastLm.cpp:130:19: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 1>, Eigen::Matrix >' fastLm.cpp:137:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Matrix >, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 1>, Eigen::Matrix >, 0>' fastLm.cpp:137:47: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix >, 0> > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, 1>, Eigen::Matrix >, 0> > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> >' fastLm.cpp:137:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >' fastLm.cpp:137:62: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' fastLm.cpp:159:26: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper >' fastLm.cpp:159:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::DiagonalWrapper > >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::DiagonalWrapper > >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::DiagonalWrapper > >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base >, Eigen::DiagonalWrapper > >, 1, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl >, Eigen::DiagonalWrapper > >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product >, Eigen::DiagonalWrapper > >, 1>' fastLm.cpp:159:59: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 0>' fastLm.cpp:160:32: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper >' fastLm.cpp:168:39: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::DiagonalWrapper > >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::DiagonalWrapper > >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::DiagonalWrapper > >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::DiagonalWrapper > >, 1, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::DiagonalWrapper > >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::DiagonalWrapper > >, 1>' fastLm.cpp:168:62: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, -1>' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:96:21: required from 'class Eigen::Tridiagonalization >' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:105:62: required from 'class Eigen::SelfAdjointEigenSolver >' fastLm.cpp:176:39: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Array > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::Array > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Array, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Array >' fastLm.cpp:178:48: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Array > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Array > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Array > > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper, const Eigen::Array > >' fastLm.cpp:178:57: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::DiagonalWrapper, const Eigen::Array > > >, 1>' fastLm.cpp:178:70: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>' fastLm.cpp:179:51: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> >, const Eigen::Matrix >' fastLm.cpp:226:49: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >' fastLm.cpp:231:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >' fastLm.cpp:231:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/util/XprHelper.h:510:38: required from 'struct Eigen::internal::cast_return_type, 0, Eigen::Stride<0, 0> >, const Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:48:179: required from 'struct Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::CastXpr' ../inst/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:62:1: required by substitution of 'template typename Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::CastXpr::Type Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >::cast() const [with NewType = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:359:9: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/util/XprHelper.h:510:38: required from 'struct Eigen::internal::cast_return_type, const Eigen::CwiseUnaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:48:179: required from 'struct Eigen::MatrixBase >::CastXpr' ../inst/include/Eigen/src/Core/../plugins/CommonCwiseUnaryOps.h:62:1: required by substitution of 'template typename Eigen::MatrixBase >::CastXpr::Type Eigen::MatrixBase >::cast() const [with NewType = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:359:9: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:107:59: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' fastLm.cpp:69:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:307:86: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:307:86: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>' ../inst/include/Eigen/src/Cholesky/LLT.h:441:39: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, 1, true>, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1, 1, true>, -1>' ../inst/include/Eigen/src/Cholesky/LLT.h:441:65: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' ../inst/include/Eigen/src/Cholesky/LLT.h:441:97: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, false>, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, 1, -1, false>, 1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>, 1, -1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, 1, -1, false>, -1>' ../inst/include/Eigen/src/Cholesky/LLT.h:441:116: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:433:37: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]' fastLm.cpp:229:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:496, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'class Eigen::internal::gebp_traits': ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:72:102: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:391:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:392:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:393:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:519:82: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:548:10: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:332:39: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 0>' ../inst/include/Eigen/src/Cholesky/LDLT.h:319:22: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 0>, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, 0>, -1>' ../inst/include/Eigen/src/Cholesky/LDLT.h:319:35: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 0>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 0>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 0>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >' ../inst/include/Eigen/src/Cholesky/LDLT.h:319:46: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' ../inst/include/Eigen/src/Cholesky/LDLT.h:346:35: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 1, -1, false> >' ../inst/include/Eigen/src/Cholesky/LDLT.h:352:67: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 0>, -1, 1, false> >, Eigen::Transpose, 1, -1, false> >, 1>' ../inst/include/Eigen/src/Cholesky/LDLT.h:352:67: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:121:7: required from 'class Eigen::internal::dense_product_base, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, 6>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>' ../inst/include/Eigen/src/Cholesky/LDLT.h:353:35: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:32: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Cholesky/LDLT.h:373:58: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper, -1, 1, false> >' ../inst/include/Eigen/src/Cholesky/LDLT.h:381:34: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/SVD/JacobiSVD.h:683:29: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/SVD/JacobiSVD.h:683:29: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/SVD/JacobiSVD.h:689:60: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix >, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, const Eigen::Matrix >, 0>' ../inst/include/Eigen/src/SVD/JacobiSVD.h:697:64: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >' ../inst/include/Eigen/src/SVD/JacobiSVD.h:757:62: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:438:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]' fastLm.cpp:62:26: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:496, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]': ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:100:15: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1981:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] PacketBlock kernel; ^~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; bool Conjugate = false; bool PanelMode = false]': ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:106:17: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] PacketBlock kernel; ^~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, Eigen::internal::gebp_kernel::ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; Eigen::internal::gebp_kernel::ResScalar = double]': ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:113:15: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1537:21: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] const int SResPacketHalfSize = unpacket_traits::half>::size; ^~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1592:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; ^~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1593:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; ^~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1594:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; ^~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1595:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; ^~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52: required from 'void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 1; Eigen::internal::tribb_kernel::ResScalar = double]' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:155:52: required from 'void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 1; Eigen::internal::tribb_kernel::ResScalar = double]' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>' ../inst/include/Eigen/src/Householder/Householder.h:44:80: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' ../inst/include/Eigen/src/Householder/Householder.h:124:63: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>, -1, -1, false>' ../inst/include/Eigen/src/Householder/Householder.h:125:82: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:126:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Householder/Householder.h:126:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>, 1, -1, false>' ../inst/include/Eigen/src/Householder/Householder.h:127:9: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Householder/Householder.h:128:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Householder/Householder.h:128:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:129:29: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Householder/Householder.h:129:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:83:75: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false> >' ../inst/include/Eigen/src/Core/TriangularMatrix.h:174:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/TriangularMatrix.h:186:58: required from 'class Eigen::TriangularView, -1, -1, false> >, 6>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:96: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:96: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 2>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 2>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 2>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 2>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 2>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 2>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:94:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' ../inst/include/Eigen/src/Core/TriangularMatrix.h:174:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/TriangularMatrix.h:186:58: required from 'class Eigen::TriangularView >, 1>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 1>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, 1>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, 1>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base >, 1>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl >, 1>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product >, 1>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 5>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, 5>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, 5>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:22: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' ../inst/include/Eigen/src/Householder/Householder.h:124:63: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>, -1, 1, false>' ../inst/include/Eigen/src/Householder/Householder.h:125:82: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:126:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:121:7: required from 'class Eigen::internal::dense_product_base, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0, 6>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Householder/Householder.h:126:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, 1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>, 1, 1, false>' ../inst/include/Eigen/src/Householder/Householder.h:127:9: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Householder/Householder.h:128:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Householder/Householder.h:128:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:129:29: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 4>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Householder/Householder.h:129:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/Dot.h:221:25: required from 'static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:269:52: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:441:77: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/Dot.h:221:25: required from 'static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:269:52: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:441:77: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:1337:8: required from 'struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from 'struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >' ../inst/include/Eigen/src/Core/BooleanRedux.h:86:60: required from 'bool Eigen::DenseBase::all() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >]' ../inst/include/Eigen/src/Cholesky/LDLT.h:373:21: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:1337:8: required from 'struct Eigen::internal::evaluator_wrapper_base, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from 'struct Eigen::internal::unary_evaluator, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >' ../inst/include/Eigen/src/Core/BooleanRedux.h:86:60: required from 'bool Eigen::DenseBase::all() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1, true>, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >]' ../inst/include/Eigen/src/Cholesky/LDLT.h:373:21: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:1337:8: required from 'struct Eigen::internal::evaluator_wrapper_base, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from 'struct Eigen::internal::unary_evaluator, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > > >' ../inst/include/Eigen/src/Core/BooleanRedux.h:86:60: required from 'bool Eigen::DenseBase::all() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, -1, 1, false> >, const Eigen::CwiseNullaryOp, Eigen::Array > >]' ../inst/include/Eigen/src/Cholesky/LDLT.h:381:19: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false> >' ../inst/include/Eigen/src/Core/TriangularMatrix.h:174:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/TriangularMatrix.h:186:58: required from 'class Eigen::TriangularView, -1, -1, false> >, 1>' ../inst/include/Eigen/src/SVD/JacobiSVD.h:232:24: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/misc/RealSvd2x2.h:25:26: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation*, Eigen::JacobiRotation*) [with MatrixType = Eigen::Matrix; RealScalar = double; Index = long int]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:722:42: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, -1>' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:447:43: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:505:34: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, false> >': ../inst/include/Eigen/src/Core/Visitor.h:69:8: required from 'class Eigen::internal::visitor_evaluator, 1, -1, false> >' ../inst/include/Eigen/src/Core/Visitor.h:110:17: required from 'void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, 1, -1, false> >; Derived = Eigen::Block, 1, -1, false>]' ../inst/include/Eigen/src/Core/Visitor.h:266:3: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:519:50: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, true>, -1, 1, false>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/Householder.h:74:64: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/Householder/Householder.h:91:22: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:565:40: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:24: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, true>, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:74: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:83: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:64:102: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:64:57: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:107: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:61: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:16: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:36: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:96: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 2>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 2>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 2>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 2>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 2>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 2>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:94:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 1>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, 1>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, 1>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base >, 1>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl >, 1>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product >, 1>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 5>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, 5>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, 5>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:22: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, Eigen::Transpose, 1, -1, false> >, 0>' ../inst/include/Eigen/src/Cholesky/LLT.h:325:45: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:337:23: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Cholesky/LLT.h:316:35: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Cholesky/LLT.h:325:45: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Transpose, -1, -1, false>, 1, -1, false> >, 0>' ../inst/include/Eigen/src/Cholesky/LLT.h:325:45: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:829:17: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, 1>, Eigen::Matrix >, Eigen::internal::member_norm, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:125:63: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, 0>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, 0>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Visitor.h:69:8: required from 'class Eigen::internal::visitor_evaluator, const Eigen::Block, 0>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Visitor.h:110:17: required from 'void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, const Eigen::Block, 0>, -1, 1, false> > >; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >]' ../inst/include/Eigen/src/Core/Visitor.h:266:3: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 0>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Cholesky/LDLT.h:319:7: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:131:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Product.h:170:24: required from 'Eigen::ProductImpl::Scalar Eigen::ProductImpl::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Option = 0; Eigen::ProductImpl::Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/DenseBase.h:484:33: required from 'Eigen::DenseBase::CoeffReturnType Eigen::DenseBase::value() const [with Derived = Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Eigen::DenseBase::CoeffReturnType = double]' ../inst/include/Eigen/src/Cholesky/LDLT.h:353:27: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 2, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, 2, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, 2, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 2, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 2, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 2, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Jacobi/Jacobi.h:279:10: required from 'void Eigen::MatrixBase::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/misc/RealSvd2x2.h:46:3: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation*, Eigen::JacobiRotation*) [with MatrixType = Eigen::Matrix; RealScalar = double; Index = long int]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:722:42: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/DenseBase.h:174:81: required from 'class Eigen::DenseBase, 1, 2, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 2, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 2, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase, 1, 2, false>, 1>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, 2, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Jacobi/Jacobi.h:279:10: required from 'void Eigen::MatrixBase::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/misc/RealSvd2x2.h:46:3: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation*, Eigen::JacobiRotation*) [with MatrixType = Eigen::Matrix; RealScalar = double; Index = long int]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:722:42: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, false> >': ../inst/include/Eigen/src/Jacobi/Jacobi.h:454:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 1, -1, false>; VectorY = Eigen::Block, 1, -1, false>; OtherScalar = double]' ../inst/include/Eigen/src/Jacobi/Jacobi.h:281:40: required from 'void Eigen::MatrixBase::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:725:13: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': ../inst/include/Eigen/src/Core/Visitor.h:69:8: required from 'class Eigen::internal::visitor_evaluator, -1, 1, false> >' ../inst/include/Eigen/src/Core/Visitor.h:110:17: required from 'void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor, -1, 1, false> >; Derived = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/Core/Visitor.h:266:3: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, -1, 1, false>; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:769:16: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:368:35: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Jacobi/Jacobi.h:294:10: required from 'void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:862:7: required from 'void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:520:87: required from 'Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:171:9: required from 'void Eigen::internal::tribb_kernel::operator()(Eigen::internal::tribb_kernel::ResScalar*, Index, Index, const LhsScalar*, const RhsScalar*, Index, Index, const ResScalar&) [with LhsScalar = double; RhsScalar = double; Index = long int; int mr = 4; int nr = 4; bool ConjLhs = false; bool ConjRhs = false; int ResInnerStride = 1; int UpLo = 1; Eigen::internal::tribb_kernel::ResScalar = double]' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h:116:13: required from 'static void Eigen::internal::general_matrix_matrix_triangular_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_triangular_product::ResScalar*, Index, Index, const ResScalar&, Eigen::internal::level3_blocking&) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int UpLo = 1; int Version = 0; Eigen::internal::general_matrix_matrix_triangular_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:113:12: required from 'static void Eigen::selfadjoint_product_selector::run(MatrixType&, const OtherType&, const typename MatrixType::Scalar&) [with MatrixType = Eigen::Matrix; OtherType = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int UpLo = 1; typename MatrixType::Scalar = double]' ../inst/include/Eigen/src/Core/products/SelfadjointProduct.h:126:62: required from 'Eigen::SelfAdjointView& Eigen::SelfAdjointView::rankUpdate(const Eigen::MatrixBase&, const Scalar&) [with DerivedU = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; _MatrixType = Eigen::Matrix; unsigned int UpLo = 1; Eigen::SelfAdjointView::Scalar = double]' fastLm.cpp:70:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Householder/Householder.h:76:37: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:129:29: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, -1, false>, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:221:29: required from 'static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:269:52: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, 1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:441:77: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:321:18: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:337:23: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, false>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:321:18: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': ../inst/include/Eigen/src/Core/util/XprHelper.h:369:102: required from 'struct Eigen::internal::plain_object_eval, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from 'struct Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from 'static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/HouseholderSequence.h:255:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Householder/Householder.h:165:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:255:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, 5>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose, -1, 1, false> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/HouseholderSequence.h:255:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/HouseholderSequence.h:258:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 5>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/HouseholderSequence.h:258:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, 2, false> >': ../inst/include/Eigen/src/Jacobi/Jacobi.h:454:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 1, 2, false>; VectorY = Eigen::Block, 1, 2, false>; OtherScalar = double]' ../inst/include/Eigen/src/Jacobi/Jacobi.h:281:40: required from 'void Eigen::MatrixBase::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/misc/RealSvd2x2.h:46:3: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation*, Eigen::JacobiRotation*) [with MatrixType = Eigen::Matrix; RealScalar = double; Index = long int]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:722:42: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:438:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:433:14: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, true> >': ../inst/include/Eigen/src/Jacobi/Jacobi.h:454:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase&, Eigen::DenseBase&, const Eigen::JacobiRotation&) [with VectorX = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; VectorY = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, true>; OtherScalar = double]' ../inst/include/Eigen/src/Jacobi/Jacobi.h:296:40: required from 'void Eigen::MatrixBase::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation&) [with OtherScalar = double; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:862:7: required from 'void Eigen::internal::tridiagonal_qr_step(RealScalar*, RealScalar*, Index, Index, Scalar*, Index) [with int StorageOrder = 0; RealScalar = double; Scalar = double; Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:520:87: required from 'Eigen::ComputationInfo Eigen::internal::computeFromTridiagonal_impl(DiagType&, SubDiagType&, Eigen::Index, bool, MatrixType&) [with MatrixType = Eigen::Matrix; DiagType = Eigen::Matrix; SubDiagType = Eigen::Matrix; Eigen::Index = long int]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:439:49: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double]' fastLm.cpp:229:45: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Matrix; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_max_op; Derived = Eigen::internal::redux_evaluator >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:438:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:509:88: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >': ../inst/include/Eigen/src/Core/util/XprHelper.h:369:102: required from 'struct Eigen::internal::plain_object_eval, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from 'struct Eigen::internal::generic_product_impl, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, 1, true>, -1, 1, false> >; Rhs = Eigen::Block, -1, -1, false>, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:141:7: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:181:25: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:53: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >' ../inst/include/Eigen/src/Householder/Householder.h:91:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 2>' ../inst/include/Eigen/src/Cholesky/LDLT.h:565:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product > >, Eigen::Matrix, 2>' ../inst/include/Eigen/src/Cholesky/LDLT.h:595:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/Dot.h:37:48: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:53: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h:33:74: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:60: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/products/SelfadjointRank2Update.h:34:23: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/Householder.h:76:37: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:95:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:42: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:61: required from 'static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, 1, false> >; Rhs = Eigen::Block, -1, 1, false>, -1, 1, false>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 4>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:411:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Householder/Householder.h:76:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:141:7: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = const double&; Eigen::Index = long int]' ../inst/include/Eigen/src/Householder/Householder.h:77:20: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:141:7: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = const double&; Eigen::Index = long int]' ../inst/include/Eigen/src/Householder/Householder.h:77:20: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:221:29: required from 'static typename Eigen::NumTraits::Scalar>::Real Eigen::internal::lpNorm_selector::run(const Eigen::MatrixBase&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:269:52: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::lpNorm() const [with int p = 1; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:441:77: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Cholesky/LLT.h:321:18: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:61: required from 'static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Product.h:170:24: required from 'Eigen::ProductImpl::Scalar Eigen::ProductImpl::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Block, 1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Option = 0; Eigen::ProductImpl::Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/DenseBase.h:484:33: required from 'Eigen::DenseBase::CoeffReturnType Eigen::DenseBase::value() const [with Derived = Eigen::Product, 1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Eigen::DenseBase::CoeffReturnType = double]' ../inst/include/Eigen/src/Cholesky/LDLT.h:353:27: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:67: required from 'Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Cholesky/LDLT.h:586:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:505:34: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:565:40: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false>, 1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, 1, false>, 1, 1, false>; Functor = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, 1, false>, 1, 1, false>; Functor = Eigen::internal::add_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, 1, false>, 1, 1, false>; Func = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, 1, false>, 1, 1, false>; Func = Eigen::internal::add_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from 'Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, false>, 1, 1, false>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]' ../inst/include/Eigen/src/Householder/Householder.h:127:9: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, -1, false> >': ../inst/include/Eigen/src/Core/util/XprHelper.h:369:102: required from 'struct Eigen::internal::plain_object_eval, -1, -1, false>, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from 'struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> >; Rhs = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, 0>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:42:31: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': ../inst/include/Eigen/src/Core/util/XprHelper.h:369:102: required from 'struct Eigen::internal::plain_object_eval, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from 'struct Eigen::internal::generic_product_impl, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product, -1, -1, false>, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:42:31: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/HouseholderSequence.h:255:13: required from 'void Eigen::HouseholderSequence::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:233:30: required from 'bool Eigen::internal::qr_preconditioner_impl::run(Eigen::JacobiSVD&, const MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:684:5: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Householder/Householder.h:76:37: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:5: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 16, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 16, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 16, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 16, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, false>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from 'Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, -1, -1, false>, -1, 1, false>; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Cholesky/LLT.h:326:21: required from 'static Eigen::Index Eigen::internal::llt_inplace::unblocked(MatrixType&) [with MatrixType = Eigen::Block, -1, -1, false>; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:356:24: required from 'static Eigen::Index Eigen::internal::llt_inplace::blocked(MatrixType&) [with MatrixType = Eigen::Matrix; Scalar = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Cholesky/LLT.h:401:68: required from 'static bool Eigen::internal::LLT_Traits::inplace_decomposition(MatrixType&) [with MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LLT.h:449:42: required from 'Eigen::LLT& Eigen::LLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LLT.h:100:7: required from 'Eigen::LLT::LLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:122:50: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>': ../inst/include/Eigen/src/Core/GeneralProduct.h:244:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:383:34: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from 'static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:75:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:76:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:77:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/GeneralProduct.h:287:40: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:383:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:689:18: required from 'Eigen::JacobiSVD& Eigen::JacobiSVD::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:548:7: required from 'Eigen::JacobiSVD::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix; int QRPreconditioner = 2; Eigen::JacobiSVD::MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/SVD/JacobiSVD.h:799:10: required from 'Eigen::JacobiSVD::PlainObject> Eigen::MatrixBase::jacobiSvd(unsigned int) const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::DenseBase::PlainObject = Eigen::Matrix]' fastLm.cpp:166:64: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true>, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/Householder.h:91:15: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/Householder/Householder.h:45:3: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:538:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/GeneralProduct.h:197:12: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/GeneralProduct.h:197:12: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::OuterStride<> >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:97:18: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:123:64: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>': ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:131:115: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Side = 1; int Mode = 2]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:509:37: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:605:3: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:75:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:76:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:77:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:496, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = true]': ../inst/include/Eigen/src/Core/products/TriangularSolverMatrix.h:153:19: required from 'static void Eigen::internal::triangular_solve_matrix::run(Index, Index, const Scalar*, Index, Scalar*, Index, Index, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 2; bool Conjugate = false; int TriStorageOrder = 0; int OtherInnerStride = 1]' ../inst/include/Eigen/src/Core/SolveTriangular.h:102:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; int Side = 1; int Mode = 2]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:509:37: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:539:7: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::CwiseNullaryOp, Eigen::Matrix >; DstType = Eigen::Matrix; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/Core/Solve.h:147:5: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::TriangularView, -1, -1, false>, 2>; RhsType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::SrcXprType = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from 'Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:818:7: required from 'void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >; OtherDerived = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Solve, -1, -1, false>, 2>, Eigen::CwiseNullaryOp, Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]' fastLm.cpp:100:43: required from here ../inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1981:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] PacketBlock kernel; ^~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:797:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Src = Eigen::Product, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:797:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Src = Eigen::Product, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false>, -1, -1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, 1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::add_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block, -1, -1, false>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::add_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, -1, false> >' ../inst/include/Eigen/src/Core/TriangularMatrix.h:174:44: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, true>, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:96: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, true>, -1, -1, false>, 5>, Eigen::Matrix, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:126:41: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0> >' ../inst/include/Eigen/src/Core/Product.h:121:7: required from 'class Eigen::internal::dense_product_base, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0, 6>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Householder/Householder.h:126:41: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/Householder.h:129:29: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, -1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, 4>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Householder/Householder.h:129:41: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/GeneralProduct.h:244:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:383:34: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:178:42: required from 'static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper pcj; ^~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::OuterStride<> >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:39:18: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>': ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:65:115: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 6]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Transpose >; unsigned int _Mode = 6]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:509:37: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Transpose >; unsigned int _Mode = 6]' ../inst/include/Eigen/src/Cholesky/LDLT.h:592:3: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:351:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:352:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:353:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:78:60: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:78:73: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:78:124: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, -1, -1, false>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>' ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:165:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:35: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, false>, const Eigen::Block, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:37:52: required from 'static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block, -1, 1, false>; U = Eigen::Block, -1, 1, true>, -1, 1, false>; bool NeedToTranspose = false; Eigen::internal::dot_nocheck::ResScalar = double]' ../inst/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:370:53: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, -1, false>, -1, -1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:131:115: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Side = 1; int Mode = 2]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:509:37: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:605:3: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper pcj; ^~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 1, -1, true>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:5: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:150:68: required from 'static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 0>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:35: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:370, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': ../inst/include/Eigen/src/Core/DenseBase.h:174:81: required from 'class Eigen::DenseBase, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 0>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:35: required from 'static void Eigen::internal::product_triangular_matrix_matrix::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking&) [with Scalar = double; Index = long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:23: required from 'static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, 1, false> >; Rhs = Eigen::Block, -1, 1, false>, -1, 1, false>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:42:31: required from 'ExpressionType& Eigen::NoAlias::operator=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>; ExpressionType = Eigen::Map, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:126:19: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >' ../inst/include/Eigen/src/Core/Dot.h:98:43: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Householder/Householder.h:76:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false>, -1, 1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:57: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1, 1, false>, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false>, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false>, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0, 7>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, true>, -1, -1, false>, -1, -1, false>, 5>, 0>' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:64:57: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:371, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/util/Memory.h: In instantiation of 'Index Eigen::internal::first_default_aligned(const Scalar*, Index) [with Scalar = double; Index = long int]': ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:128:55: required from 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/GeneralProduct.h:244:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Dest = Eigen::Block, -1, 1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:383:34: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, Eigen::Block, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:357:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, Eigen::Block, -1, 1, false>, 0>; ExpressionType = Eigen::Block, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Cholesky/LDLT.h:355:25: required from 'static bool Eigen::internal::ldlt_inplace<1>::unblocked(MatrixType&, TranspositionType&, Workspace&, Eigen::internal::SignMatrix&) [with MatrixType = Eigen::Matrix; TranspositionType = Eigen::Transpositions<-1, -1, int>; Workspace = Eigen::Matrix]' ../inst/include/Eigen/src/Cholesky/LDLT.h:520:51: required from 'Eigen::LDLT& Eigen::LDLT::compute(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' ../inst/include/Eigen/src/Cholesky/LDLT.h:112:7: required from 'Eigen::LDLT::LDLT(const Eigen::EigenBase&) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix; int _UpLo = 1]' fastLm.cpp:129:50: required from here ../inst/include/Eigen/src/Core/util/Memory.h:470:10: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return first_aligned::alignment>(array, size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::CwiseNullaryOp, Eigen::Matrix >; Functor = Eigen::internal::div_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::CwiseNullaryOp, Eigen::Matrix >; Func = Eigen::internal::div_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/SelfCwiseBinaryOp.h:41:28: required from 'Derived& Eigen::DenseBase::operator/=(const Scalar&) [with Derived = Eigen::Block, 1, 1, false>; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Cholesky/LDLT.h:586:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:65:115: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 6]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Transpose >; unsigned int _Mode = 6]' ../inst/include/Eigen/src/Core/TriangularMatrix.h:509:37: required from 'void Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; _MatrixType = const Eigen::Transpose >; unsigned int _Mode = 6]' ../inst/include/Eigen/src/Cholesky/LDLT.h:592:3: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper pcj; ^~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:372:5: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/util/BlasUtil.h:464:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false> >, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false> >, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false> >, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::Block, -1, -1, false>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >]' ../inst/include/Eigen/src/Core/Assign.h:66:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:280:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, -1, false>, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/GeneralProduct.h:197:12: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/GeneralProduct.h:197:12: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:503, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In instantiation of 'static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]': ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:227:7: required from 'static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Eigen::internal::selfadjoint_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:772:109: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Derived = Eigen::internal::generic_product_impl, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::SelfAdjointShape, Eigen::DenseShape, 7>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Block, -1, 1, false>; Lhs = Eigen::SelfAdjointView, -1, -1, false>, 1>; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, false>, 1>, Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:367:35: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, CoeffVectorType&) [with MatrixType = Eigen::Matrix; CoeffVectorType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:445:31: required from 'static void Eigen::internal::tridiagonalization_inplace_selector::run(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix; MatrixType = Eigen::Matrix; int Size = -1; bool IsComplex = false]' ../inst/include/Eigen/src/Eigenvalues/Tridiagonalization.h:430:55: required from 'void Eigen::internal::tridiagonalization_inplace(MatrixType&, DiagonalType&, SubDiagonalType&, bool) [with MatrixType = Eigen::Matrix; DiagonalType = Eigen::Matrix; SubDiagonalType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:437:39: required from 'Eigen::SelfAdjointEigenSolver& Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:168:7: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const Eigen::EigenBase&, int) [with InputType = Eigen::SelfAdjointView, 1>; _MatrixType = Eigen::Matrix]' fastLm.cpp:176:69: required from here ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:60:121: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, IsRowMajor), ConjugateRhs> pcj0; ^~~~ ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:60:121: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:61:121: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper::IsComplex && EIGEN_LOGICAL_XOR(ConjugateLhs, !IsRowMajor), ConjugateRhs> pcj1; ^~~~ ../inst/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:61:121: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::PartialReduxExpr, -1, -1, false>, 2>, Eigen::Matrix >, Eigen::internal::member_norm, 1>, 2>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:95:55: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<> >, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:111: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:111: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 1>': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:145:123: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; Derived = Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:351:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:352:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:353:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 1, false, double, Eigen::internal::const_blas_data_mapper, false, 0>': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:154:113: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; Derived = Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:351:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:352:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:353:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0> >' ../inst/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal, 0>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:35: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:5: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Diagonal, 0>; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Diagonal, 0>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:522:55: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, 1, -1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, 1, -1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false>, -1, 1, false> >': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:141:7: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::coeff(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:181:25: required from 'Eigen::DenseCoeffsBase::CoeffReturnType Eigen::DenseCoeffsBase::operator()(Eigen::Index) const [with Derived = Eigen::Block, -1, 1, false>, -1, 1, false>; Eigen::DenseCoeffsBase::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:53: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1, 1, false>, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, true>, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1, 1, false>, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, 1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, 1, true>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:305:135: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:547:5: required from 'void Eigen::ColPivHouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:475:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/ColPivHouseholderQR.h:135:7: required from 'Eigen::ColPivHouseholderQR::ColPivHouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:88:37: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 1; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:145:123: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; Derived = Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper pcj; ^~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:154:113: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>; Derived = Eigen::internal::generic_product_impl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView, -1, -1, false>, -1, -1, false>, 5>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:385:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:28: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:40: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:637:5: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> >, 1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:72: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:637:5: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:61: required from 'static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, -1, true>, -1, 1, false> >; Rhs = Eigen::Block, -1, 1, false>, -1, 1, false>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, 4>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:411:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularSolverVector.h:78:18: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 6; bool Conjugate = false]' ../inst/include/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; int Side = 1; int Mode = 6]' ../inst/include/Eigen/src/Core/SolveTriangular.h:182:21: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:92:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:5: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' ../inst/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' ../inst/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block, -1, -1, false>, -1, -1, true>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, -1, -1, false>, 5>, Eigen::Matrix, 0>; ExpressionType = Eigen::Block, -1, -1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Dot.h:98:22: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double]' ../inst/include/Eigen/src/Core/VectorwiseOp.h:100:1: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Functor = Eigen::internal::assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>]' ../inst/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_norm, 1>; Derived = Eigen::Block, -1, 1, false>]' fastLm.cpp:108:58: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 1, -1, true>, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 1, -1, true>, 1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 2>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:94:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; bool LhsIsTriangular = true; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 2>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:94:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase >, -1, -1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase >, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense >, -1, -1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, 1>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 1; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose >; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, 1>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/NoAlias.h:58:31: required from 'ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' ../inst/include/Eigen/src/Householder/Householder.h:129:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:342:11: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>, -1, -1, false>, -1, 1, true>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:305:135: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/QR/HouseholderQR.h:284:5: required from 'void Eigen::internal::householder_qr_inplace_unblocked(MatrixQR&, HCoeffs&, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Block, -1, -1, false>; HCoeffs = Eigen::Block, -1, 1, false>; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:334:39: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, -1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block, -1, -1, false>, -1, -1, true>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:96:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Matrix, 2>' ../inst/include/Eigen/src/Cholesky/LDLT.h:565:26: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:137:62: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase > >, Eigen::Matrix, 2>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >, Eigen::Matrix, 2> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base > >, Eigen::Matrix, 2, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl > >, Eigen::Matrix, 2, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product > >, Eigen::Matrix, 2>' ../inst/include/Eigen/src/Cholesky/LDLT.h:595:38: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::ArrayWrapper, 1>, Eigen::Matrix >, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:137:62: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:36: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: [ skipping 26 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Derived = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:27: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:63:43: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, true>, 1, -1, false> >, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:282:54: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; Dest = Eigen::Transpose >; int Mode = 1; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Derived = Eigen::Block, -1, -1, true>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:377:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Product, -1, -1, false> >, 6>, Eigen::Block, -1, -1, false>, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, true>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, true>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false>, -1, -1, true>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false>, -1, -1, true, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block, -1, -1, true>, -1, -1, false>; Rhs = Eigen::Matrix; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<> > >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<> >, 0>' ../inst/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::InnerStride<> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:48:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 1>' ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 3>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 1>': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:74:123: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const RhsScalar&) [with Index = long int; int Mode = 1; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:266:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; Dest = Eigen::Transpose >; int Mode = 1; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 2>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 2>; Derived = Eigen::internal::generic_product_impl, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:75:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type LhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:76:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type RhsPacket; ^~~~~~~~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:77:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename conditional::type ResPacket; ^~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block, -1, -1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, -1, -1, false> >; Derived = Eigen::Block, -1, -1, true>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:92:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::Block, -1, 1, false>]' ../inst/include/Eigen/src/QR/HouseholderQR.h:339:44: required from 'static void Eigen::internal::householder_qr_inplace_blocked::run(MatrixQR&, HCoeffs&, Eigen::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; MatrixQRScalar = double; bool InnerStrideIsOne = true; Eigen::Index = long int; typename MatrixQR::Scalar = double]' ../inst/include/Eigen/src/QR/HouseholderQR.h:391:73: required from 'void Eigen::HouseholderQR::computeInPlace() [with _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:172:7: required from 'Eigen::HouseholderQR& Eigen::HouseholderQR::compute(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' ../inst/include/Eigen/src/QR/HouseholderQR.h:103:7: required from 'Eigen::HouseholderQR::HouseholderQR(const Eigen::EigenBase&) [with InputType = Eigen::Map, 0, Eigen::Stride<0, 0> >; _MatrixType = Eigen::Matrix]' fastLm.cpp:113:30: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, -1, false>, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; Eigen::Index = long int]': ../inst/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >; Eigen::internal::redux_impl::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:251:23: required from 'static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, -1, true>, -1, 1, false> >; Rhs = Eigen::Block, -1, 1, false>, -1, 1, false>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Map, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Transpose, -1, -1, true>, -1, 1, false> >; Rhs = Eigen::Block, -1, 1, false>, -1, 1, false>; int Options = 0; Scalar = double; Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product, -1, -1, true>, -1, 1, false> >, Eigen::Block, -1, 1, false>, -1, 1, false>, 0>]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 1, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 1>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:436:29: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1> >' ../inst/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, 8>' ../inst/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1, Eigen::Dense>' ../inst/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 1>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:436:29: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:499, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsMapper&, const RhsMapper&, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; LhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateLhs = false; RhsScalar = double; RhsMapper = Eigen::internal::const_blas_data_mapper; bool ConjugateRhs = false; int Version = 1; Eigen::internal::general_matrix_vector_product::ResScalar = double]': ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:74:123: required from 'static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::triangular_matrix_vector_product::ResScalar*, Index, const RhsScalar&) [with Index = long int; int Mode = 1; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; Eigen::internal::triangular_matrix_vector_product::ResScalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:266:12: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false> >; Rhs = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; Dest = Eigen::Transpose >; int Mode = 1; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 2; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:751:113: required from 'static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 2>; int ProductTag = 7; Eigen::internal::generic_product_impl::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Block, 1, -1, true>, 1, -1, false>; Rhs = Eigen::TriangularView, -1, -1, false>, 2>; Derived = Eigen::internal::generic_product_impl, 1, -1, true>, 1, -1, false>, Eigen::TriangularView, -1, -1, false>, 2>, Eigen::DenseShape, Eigen::TriangularShape, 7>; Eigen::internal::generic_product_impl_base::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:349:33: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] conj_helper pcj; ^~~ ../inst/include/Eigen/src/Core/products/GeneralMatrixVector.h:112:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/util/BlasUtil.h:464:13: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>' ../inst/include/Eigen/src/Core/VectorBlock.h:56:47: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54: required from 'static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false> >, -1, -1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, -1, false> >, -1, -1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, -1, false> >, -1, -1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, -1, true>, -1, -1, false> >, -1, -1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose, -1, -1, true>, -1, -1, false> >; Rhs = Eigen::Block, -1, -1, false>; typename Dest::Scalar = double]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:738:14: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::Block, -1, 1, true>; Functor = Eigen::internal::swap_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = Eigen::internal::swap_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::Block, -1, 1, true>; Func = Eigen::internal::swap_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/DenseBase.h:418:22: required from 'void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; Derived = Eigen::Block, -1, 1, true>]' ../inst/include/Eigen/src/Core/ProductEvaluators.h:1088:36: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 1>, Eigen::Product, 0, Eigen::Stride<0, 0> > >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:135:46: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' ../inst/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:436:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, 2>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:94:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator >, -1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator >, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product >, 1>, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:95:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false, false>' ../inst/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false, Eigen::Dense>' ../inst/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false>' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:28: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:40: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:637:5: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:589:72: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:637:5: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 1, -1, true>, 1, -1, false> >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator >, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Func = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Func = Eigen::internal::sub_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false> >; Derived = Eigen::Block >, -1, 1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:282:27: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, -1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, -1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> >, -1, 1, false> >': ../inst/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Functor = Eigen::internal::add_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::add_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::add_assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from 'Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >; Derived = Eigen::Block, 0, Eigen::Stride<0, 0> >, -1, 1, false>]' ../inst/include/Eigen/src/Core/products/TriangularMatrixVector.h:66:28: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Householder/BlockHouseholder.h:67:33: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/BlockHouseholder.h:85:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block, -1, -1, false>; VectorsType = Eigen::Block, -1, -1, false>; CoeffsType = Eigen::VectorBlock, -1>]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:333:46: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&, Workspace&) const [with Dest = Eigen::Matrix; Workspace = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:308:7: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1]' ../inst/include/Eigen/src/Householder/HouseholderSequence.h:360:7: required from 'typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type Eigen::HouseholderSequence::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Map, 0, Eigen::Stride<0, 0> >; VectorsType = Eigen::Matrix; CoeffsType = Eigen::Matrix; int Side = 1; typename Eigen::internal::matrix_type_times_scalar_type >::Scalar, OtherDerived>::Type = Eigen::Matrix]' fastLm.cpp:101:67: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: [ skipping 33 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:269:8: required from 'struct Eigen::internal::unary_evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 31 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, true>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false> >, -1, -1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, -1, true>, -1, -1, false> >, -1, -1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> > >' ../inst/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, -1, true>, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op; Weak = void]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve >, Eigen::Map, 0, Eigen::Stride<0, 0> > >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:114:41: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:439, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false> >, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> > >' ../inst/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, 1, -1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 1, -1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:578:40: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase >, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense >, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:578:72: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Transpose >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:631:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 0>': ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 2>' ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, 0>' ../inst/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 0, Eigen::Stride<0, 0> > >, -1, 1, false, true>' ../inst/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] ../inst/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >, 0>': ../inst/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false>, Eigen::Dense>' ../inst/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/ProductEvaluators.h:578:72: required from 'const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Product, Eigen::Transpose >, 0>; Rhs = Eigen::Transpose, 0, Eigen::Stride<0, 0> > >; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::internal::traits::Lhs>::Scalar = double; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:631:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from ../inst/include/Eigen/Core:445, from ../inst/include/Eigen/Dense:1, from ../inst/include/RcppEigenForward.h:30, from ../inst/include/RcppEigen.h:25, from fastLm.h:25, from fastLm.cpp:23: ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:160:36: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ ../inst/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >': ../inst/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >' ../inst/include/Eigen/src/Core/CoreEvaluators.h:681:51: required from 'struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>' ../inst/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from 'struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:349:39: required from 'class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> > >' ../inst/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> > >, -1, 1, false> >; typename Eigen::internal::traits::Scalar = double]' ../inst/include/Eigen/src/Core/Redux.h:453:73: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] ../inst/include/Eigen/src/Core/Matrix.h:294:31: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:796:41: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if::value, void*>::type = void*]' ../inst/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>]' ../inst/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Matrix]' ../inst/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 0>, Eigen::Transpose, 0, Eigen::Stride<0, 0> > >, 0>, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' fastLm.cpp:179:55: required from here ../inst/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o init.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-RcppEigen/00new/RcppEigen/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RcppEigen' finding HTML links ... done RcppEigen-package html RcppEigen.package.skeleton html fastLm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppEigen) Making 'packages.html' ... done * installing *source* package 'prediction' ... ** package 'prediction' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'prediction' finding HTML links ... done build_datalist html find_data html margex html mean_or_mode html prediction html seq_range html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prediction) Making 'packages.html' ... done * installing *source* package 'msm' ... ** package 'msm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c analyticp.c -o analyticp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hmm.c -o hmm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hmmderiv.c -o hmmderiv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lik.c -o lik.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c msm-init.c -o msm-init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pijt.c -o pijt.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o msm.so analyticp.o hmm.o hmmderiv.o lik.o msm-init.o pijt.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-msm/00new/msm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'msm' finding HTML links ... done 2phase html MatrixExp html aneur html boot.msm html bos html cav html cmodel.object html coef.msm html crudeinits.msm html deltamethod html draic.msm html ecmodel.object html efpt.msm html ematrix.msm html emodel.object html fev html hazard.msm html hmm-dists html hmmMV html hmodel.object html logLik.msm html lrtest.msm html medists html model.frame.msm html msm html msm.form.qoutput html msm.object html msm2Surv html odds.msm html paramdata.object html pearson.msm html pexp html phasemeans.msm html plot.msm html plot.prevalence.msm html plot.survfit.msm html plotprog.msm html pmatrix.msm html pmatrix.piecewise.msm html pnext.msm html ppass.msm html prevalence.msm html print.msm html printold.msm html psor html qcmodel.object html qgeneric html qmatrix.msm html qmodel.object html qratio.msm html recreate.olddata html scoreresid.msm html sim.msm html simfitted.msm html simmulti.msm html sojourn.msm html statetable.msm html summary.msm html surface.msm html tnorm html totlos.msm html transient.msm html updatepars.msm html viterbi.msm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (msm) Making 'packages.html' ... done * installing *source* package 'tinytex' ... ** package 'tinytex' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tinytex' finding HTML links ... done check_installed html copy_tinytex html install_tinytex html is_tinytex html latexmk html parse_install html parse_packages html r_texmf html tl_pkgs html tl_sizes html tlmgr html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytex) Making 'packages.html' ... done * installing *source* package 'hunspell' ... ** package 'hunspell' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.cpp -o dictionary.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parser.cpp -o parser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parsers/textparser.cc -o parsers/textparser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parsers/latexparser.cc -o parsers/latexparser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parsers/manparser.cc -o parsers/manparser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parsers/xmlparser.cc -o parsers/xmlparser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parsers/htmlparser.cc -o parsers/htmlparser.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/affentry.cc -o hunspell/affentry.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/affixmgr.cc -o hunspell/affixmgr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/filemgr.cc -o hunspell/filemgr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/hashmgr.cc -o hunspell/hashmgr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/hunspell.cc -o hunspell/hunspell.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/hunzip.cc -o hunspell/hunzip.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/phonet.cc -o hunspell/phonet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/replist.cc -o hunspell/replist.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/suggestmgr.cc -o hunspell/suggestmgr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ihunspell -DBUILDING_LIBHUNSPELL -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hunspell/csutil.cc -o hunspell/csutil.o ar rcs hunspell/libstathunspell.a parsers/textparser.o parsers/latexparser.o parsers/manparser.o parsers/xmlparser.o parsers/htmlparser.o hunspell/affentry.o hunspell/affixmgr.o hunspell/filemgr.o hunspell/hashmgr.o hunspell/hunspell.o hunspell/hunzip.o hunspell/phonet.o hunspell/replist.o hunspell/suggestmgr.o hunspell/csutil.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o hunspell.so RcppExports.o dictionary.o parser.o -Lhunspell -lstathunspell -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-hunspell/00new/hunspell/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hunspell' finding HTML links ... done hunspell html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hunspell) Making 'packages.html' ... done * installing *source* package 'mitools' ... ** package 'mitools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mitools' finding HTML links ... done MIcombine html MIextract html PV html imputationList html pisamaths html smi html with.imputationList html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mitools) Making 'packages.html' ... done * installing *source* package 'cli' ... ** package 'cli' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cli' finding HTML links ... done ansi-styles html ansi_align html ansi_columns html ansi_has_any html ansi_hide_cursor html ansi_nchar html ansi_regex html ansi_strip html ansi_strsplit html ansi_strtrim html ansi_strwrap html ansi_substr html ansi_substring html ansi_toupper html ansi_trimws html boxx html builtin_theme html cat_line html cli html cli_alert html cli_blockquote html cli_bullets html cli_code html cli_debug_doc html cli_div html cli_dl html cli_end html cli_format html cli_format_method html cli_h1 html cli_li html cli_list_themes html cli_ol html cli_output_connection html cli_par html cli_process_start html cli_rule html cli_sitrep html cli_status html cli_status_clear html cli_status_update html cli_text html cli_ul html cli_vec html cli_verbatim html combine_ansi_styles html console_width html containers html demo_spinners html faq html format_error html get_spinner html inline-markup html is_ansi_tty html is_dynamic_tty html is_utf8_output html list_spinners html make_ansi_style html make_spinner html match_selector html match_selector_node html num_ansi_colors html parse_selector html pluralization-helpers html pluralization html pluralize html rule html simple_theme html spark_bar html spark_line html start_app html style_hyperlink html symbol html test_that_cli html themes html tree html unicode-width-workaround html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) Making 'packages.html' ... done * installing *source* package 'desc' ... ** package 'desc' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'desc' finding HTML links ... done check_encoding html check_field html cran_ascii_fields html cran_valid_fields html dep_types html desc html desc_add_author html desc_add_author_gh html desc_add_me html desc_add_orcid html desc_add_remotes html desc_add_role html desc_add_to_collate html desc_add_urls html desc_bump_version html desc_change_maintainer html desc_clear_remotes html desc_clear_urls html desc_coerce_authors_at_r html desc_del html desc_del_author html desc_del_collate html desc_del_dep html desc_del_deps html desc_del_from_collate html desc_del_remotes html desc_del_role html desc_del_urls html desc_fields html desc_get html desc_get_author html desc_get_authors html desc_get_built html desc_get_collate html desc_get_deps html desc_get_field html desc_get_maintainer html desc_get_remotes html desc_get_urls html desc_get_version html Rd warning: /tmp/Rtmpdi1rDn/R.INSTALL47de424460f3/desc/man/desc_get_version.Rd:15: file link 'package_version' in package 'base' does not exist and so has been treated as a topic desc_has_dep html desc_has_fields html desc_normalize html desc_print html desc_reformat_fields html desc_reorder_fields html desc_set html desc_set_authors html desc_set_collate html desc_set_dep html desc_set_deps html desc_set_remotes html desc_set_urls html desc_set_version html Rd warning: /tmp/Rtmpdi1rDn/R.INSTALL47de424460f3/desc/man/desc_set_version.Rd:10: file link 'package_version' in package 'base' does not exist and so has been treated as a topic desc_to_latex html desc_validate html description html Rd warning: /tmp/Rtmpdi1rDn/R.INSTALL47de424460f3/desc/man/description.Rd:162: file link 'package_version' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpdi1rDn/R.INSTALL47de424460f3/desc/man/description.Rd:172: file link 'package_version' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpdi1rDn/R.INSTALL47de424460f3/desc/man/description.Rd:176: file link 'package_version' in package 'base' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) Making 'packages.html' ... done * installing *source* package 'processx' ... ** package 'processx' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o gcc -shared -L"/opt/R/4.0.3/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ -L"/opt/R/4.0.3/lib/R/lib" -lR gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/4.0.3/lib/R/lib -lR installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'processx' finding HTML links ... done base64_decode html curl_fds html default_pty_options html poll html process html process_initialize html processx_connections html run html supervisor_kill html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) Making 'packages.html' ... done * installing *source* package 'ellipsis' ... ** package 'ellipsis' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ellipsis/00new/ellipsis/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ellipsis' finding HTML links ... done check_dots_empty html check_dots_unnamed html check_dots_used html dots_empty html dots_used html ellipsis-package html safe_median html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ellipsis) Making 'packages.html' ... done * installing *source* package 'purrr' ... ** package 'purrr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-purrr/00new/purrr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'purrr' finding HTML links ... done accumulate html along html array-coercion html as_mapper html as_vector html at_depth html attr_getter html compose html cross html detect html done html every html exec html faq-adverbs-export html flatten html get-attr html has_element html head_while html imap html insistently html invoke html is_numeric html keep html lift html list_modify html lmap html map html map2 html Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/map2.Rd:111: file link 'pmax' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/map2.Rd:111: file link 'pmin' in package 'base' does not exist and so has been treated as a topic map_if html modify html modify_in html negate html null-default html Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/null-default.Rd:13: file link '%||%' in package 'rlang' does not exist and so has been treated as a topic partial html pipe html pluck html prepend html purrr-package html rate-helpers html rate_sleep html rbernoulli html rdunif html reduce html reduce_right html reexports html Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_atomic' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_atomic' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_character' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_double' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_integer' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_list' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_logical' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_numeric' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_bare_vector' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_character' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_double' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_integer' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_list' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_logical' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_null' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_atomic' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_character' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_double' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_integer' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_list' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_logical' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_scalar_vector' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpfPL23w/R.INSTALL499562c4c6f1/purrr/man/reexports.Rd:39: file link 'is_vector' in package 'rlang' does not exist and so has been treated as a topic rep_along html rerun html safely html set_names html splice html transpose html vec_depth html when html zap html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (purrr) Making 'packages.html' ... done * installing *source* package 'stringr' ... ** package 'stringr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stringr' finding HTML links ... done case html invert_match html modifiers html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/modifiers.Rd:102: file link 'stringi-search-boundaries' in package 'stringi' does not exist and so has been treated as a topic pipe html str_c html str_conv html str_count html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_count.Rd:16: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_detect html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_detect.Rd:16: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_dup html str_extract html Rd 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and so has been treated as a topic str_replace html finding level-2 HTML links ... done Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_replace.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_replace_na html str_split html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_split.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_starts html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_starts.Rd:20: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_sub html str_subset html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_subset.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_trim html str_trunc html str_view html Rd warning: /tmp/RtmpUcKKfn/R.INSTALL4a316a7c3c1/stringr/man/str_view.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_wrap html stringr-data html stringr-package html word html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringr) Making 'packages.html' ... done * installing *source* package 'akima' ... ** package 'akima' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU Fortran 77 compiler... no checking whether ERROR: no information for variable 'F77' accepts -g... no checking for correct optimization with SUN compilers... not running on x86*-solaris* configure: creating ./config.status config.status: creating src/Makevars ** libs gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c akima433.f -o akima433.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c akima697.f -o akima697.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c akima760.f -o akima760.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c akima761.f -o akima761.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c bilinear.f -o bilinear.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idbvip.f -o idbvip.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idcldp.f -o idcldp.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idgrid.f -o idgrid.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idlctn.f -o idlctn.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idpdrv.f -o idpdrv.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idptip.f -o idptip.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idptli.f -o idptli.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idsfft.f -o idsfft.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idtang.f -o idtang.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c idxchg.f -o idxchg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -g -O2 -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -g -O2 -fpic -g -O2 -c tripack.f -o tripack.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o akima.so akima433.o akima697.o akima760.o akima761.o bilinear.o idbvip.o idcldp.o idgrid.o idlctn.o idpdrv.o idptip.o idptli.o idsfft.o idtang.o idxchg.o init.o tripack.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-akima/00new/akima/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'akima' finding HTML links ... done akima html akima760 html aspline html bicubic html bicubic.grid html bilinear html bilinear.grid html franke.data html interp html interp.old html interp2xyz html interpp html interpp.old html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (akima) Making 'packages.html' ... done * installing *source* package 'bbmle' ... ** package 'bbmle' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bbmle' finding HTML links ... done BIC-methods html ICtab html as.data.frame.profile.mle2 html call.to.char html dnorm_n html get.mnames html mle-class html mle2 html mle2.options html namedrop html parnames html pop_pred_samp html predict-methods html profile-methods html profile.mle-class html relist html sbinom html slice html slice.mle-class html strwrapx html summary.mle-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bbmle) Making 'packages.html' ... done * installing *source* package 'biglm' ... ** package 'biglm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c boundedQR.c -o boundedQR.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c boundedQRf.f -o boundedQRf.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o biglm.so boundedQR.o boundedQRf.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-biglm/00new/biglm/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'biglm' finding HTML links ... done bigglm html biglm html predict.bigglm html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biglm) Making 'packages.html' ... done * installing *source* package 'e1071' ... ** package 'e1071' successfully unpacked and MD5 sums checked ** using staged installation checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rsvm.c -o Rsvm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cmeans.c -o cmeans.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cshell.c -o cshell.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c floyd.c -o floyd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c svm.cpp -o svm.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o init.o svm.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-e1071/00new/e1071/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'e1071' finding HTML links ... done Discrete html bclust html bincombinations html bootstrap.lca html boxplot.bclust html classAgreement html cmeans html countpattern html cshell html e1071-deprecated html element html fclustIndex html gknn html hamming.distance html hamming.window html hanning.window html hsv_palette html ica html impute html interpolate html kurtosis html lca html matchClasses html matchControls html moment html naiveBayes html permutations html plot.stft html plot.svm html plot.tune html predict.svm html Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/predict.svm.Rd:17: file link 'matrix.csr' in package 'SparseM' does not exist and so has been treated as a topic probplot html Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/probplot.Rd:8: file link 'qqplot' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/probplot.Rd:36: file link 'qqplot' in package 'stats' does not exist and so has been treated as a topic rbridge html read.matrix.csr html Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/read.matrix.csr.Rd:33: file link 'matrix.csr' in package 'SparseM' does not exist and so has been treated as a topic rectangle.window html rwiener html scale_data_frame html shortestPaths html sigmoid html skewness html stft html svm html Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/svm.Rd:32: file link 'matrix.csr' in package 'SparseM' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpQNhDBG/R.INSTALL4dfb8458052/e1071/man/svm.Rd:182: file link 'matrix.csr' in package 'SparseM' does not exist and so has been treated as a topic tune html tune.control html tune.wrapper html write.svm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (e1071) Making 'packages.html' ... done * installing *source* package 'lmtest' ... ** package 'lmtest' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c pan.f -o pan.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lmtest.so init.o pan.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lmtest/00new/lmtest/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lmtest' finding HTML links ... done ChickEgg html Mandible html USDistLag html bgtest html bondyield html bptest html coeftest html Rd warning: /tmp/Rtmp4o9YtT/R.INSTALL500e6b1ddc7/lmtest/man/coeftest.Rd:99: file link 'BIC' in package 'stats' does not exist and so has been treated as a topic coxtest html currencysubstitution html dwtest html encomptest html ftemp html gqtest html grangertest html growthofmoney html harvtest html hmctest html jocci html jtest html lrtest html moneydemand html petest html raintest html resettest html unemployment html valueofstocks html wages html waldtest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lmtest) Making 'packages.html' ... done * installing *source* package 'maptools' ... ** package 'maptools' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rcentroid.c -o Rcentroid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rgshhs.c -o Rgshhs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rshapeget.c -o Rshapeget.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rshapeinfo.c -o Rshapeinfo.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rshapewrite.c -o Rshapewrite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rshapewrite1.c -o Rshapewrite1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c insiders.c -o insiders.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pip.c -o pip.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c shpopen.c -o shpopen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c shptree.c -o shptree.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o maptools.so Rcentroid.o Rgshhs.o Rshapeget.o Rshapeinfo.o Rshapewrite.o Rshapewrite1.o init.o insiders.o pip.o shpopen.o shptree.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-maptools/00new/maptools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maptools' finding HTML links ... done CCmaps html Rd warning: /tmp/RtmpwJAK85/R.INSTALL50952a2ddacd/maptools/man/CCmaps.Rd:17: file link 'SpatialPolygonsDataFrame' in package 'sp' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpwJAK85/R.INSTALL50952a2ddacd/maptools/man/CCmaps.Rd:36: file link 'SpatialPolygonsDataFrame' in package 'sp' does not exist and so has been treated as a topic ContourLines2SLDF html GE_SpatialGrid html Rgshhs html SpatialLines2PolySet html SpatialLinesMidPoints html SplashDams html as.SpatialPolygons.tess html as.im html as.linnet.SpatialLines html as.owin html as.ppp html as.psp html asciigrid html checkPolygonsHoles html dotsInPolys html elide-methods html gcDestination html getKMLcoordinates html getinfo.shape html gzAzimuth html holepolys html kmlLine html kmlLines html kmlOverlay html kmlPoints html kmlPolygon html kmlPolygons html leglabs html lineLabel html map2SpatialPolygons html nearestPointOnLine html nearestPointOnSegment html nowrapRecenter html nowrapSpatialLines html pal2SpatialPolygons html pointLabelBase html pointLabelLattice html ppp html readGPS html readShapeLines html readShapePoints html readShapePoly html readShapeSpatial html readSplus html snapPointsToLines html finding level-2 HTML links ... done sp2Mondrian html sp2WB html sp2tmap html spCbind-methods html spRbind-methods html state.vbm html sun-methods html symbolsInPolys html thinnedSpatialPoly html unionSpatialPolygons html wrld_simpl html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maptools) Making 'packages.html' ... done * installing *source* package 'ordinal' ... ** package 'ordinal' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c get_fitted.c -o get_fitted.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c links.c -o links.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utilityFuns.c -o utilityFuns.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ordinal.so get_fitted.o init.o links.o utilityFuns.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ordinal/00new/ordinal/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ordinal' finding HTML links ... done VarCorr html addtermOld html Rd warning: /tmp/RtmpYoyszj/R.INSTALL51375b38d5d0/ordinal/man/addtermOld.Rd:71: file link 'clm2' in package 'ordinal' does not exist and so has been treated as a topic anovaOld html Rd warning: /tmp/RtmpYoyszj/R.INSTALL51375b38d5d0/ordinal/man/anovaOld.Rd:48: file link 'clm2' in package 'ordinal' does not exist and so has been treated as a topic clm html clm.anova html clm.control html finding level-2 HTML links ... done clm.controlOld html clm.fit html clmOld html clmm html clmm.control html clmm.controlOld html clmmOld html confint.clm html confint.clmmOld html confintOld html convergence.clm html dropCoef html gfun html gumbel html income html lgamma html nominal.test html ordinal-package html predict html predictOld html Rd warning: /tmp/RtmpYoyszj/R.INSTALL51375b38d5d0/ordinal/man/predictOld.Rd:40: file link 'clm2' in package 'ordinal' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYoyszj/R.INSTALL51375b38d5d0/ordinal/man/predictOld.Rd:40: file link 'clmm2' in package 'ordinal' does not exist and so has been treated as a topic ranef html slice.clm html soup html updateOld html wine html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ordinal) Making 'packages.html' ... done * installing *source* package 'poLCA' ... ** package 'poLCA' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poLCA.c -o poLCA.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o poLCA.so poLCA.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-poLCA/00new/poLCA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'poLCA' finding HTML links ... done carcinoma html cheating html election html gss82 html poLCA html poLCA.entropy html poLCA.posterior html poLCA.predcell html poLCA.reorder html poLCA.simdata html poLCA.table html rmulti html values html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (poLCA) Making 'packages.html' ... done * installing *source* package 'rgeos' ... ** package 'rgeos' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 configure: rgeos: 0.5-5 checking for /usr/bin/svnversion... no configure: svn revision: 640 checking for geos-config... no no configure: error: geos-config not found or not executable. ERROR: configuration failed for package 'rgeos' * removing '/opt/R/4.0.3/lib/R/library/rgeos' * installing *source* package 'robustbase' ... ** package 'robustbase' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R-rng4ftn.c -o R-rng4ftn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c eigen.f -o eigen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lmrob.c -o lmrob.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mc.c -o mc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c monitor.c -o monitor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c qn_sn.c -o qn_sn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rf-common.f -o rf-common.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rffastmcd.f -o rffastmcd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rfltsreg.f -o rfltsreg.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rllarsbi.f -o rllarsbi.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rob-utils.c -o rob-utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wgt_himed.c -o wgt_himed.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o robustbase.so R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-robustbase/00new/robustbase/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function 'chgDefaults' in package 'robustbase' ** help *** installing help indices converting help for package 'robustbase' finding HTML links ... done Animals2 html BYlogreg html CrohnD html M.psi html Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/M.psi.Rd:74: file link 'psi.hampel' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/M.psi.Rd:74: file link 'psi.huber' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/M.psi.Rd:75: file link 'psi.bisquare' in package 'MASS' does not exist and so has been treated as a topic NOxEmissions html Qn html SiegelsEx html Sn html adjOutlyingness html adjbox html adjboxStats html aircraft html airmay html alcohol html ambientNOxCH html anova.glmrob html anova.lmrob html biomassTill html bushfire html carrots html chgDefaults-methods html classPC html cloud html colMedians html Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/colMedians.Rd:50: file link 'colWeightedMedians' in package 'matrixStats' does not exist and so has been treated as a topic coleman html condroz html covComed html covMcd html Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/covMcd.Rd:100: file link 'cov.mcd' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpEvqQJ1/R.INSTALL53376816226f/robustbase/man/covMcd.Rd:200: file link 'cov.mcd' in package 'MASS' does not exist and so has been treated as a topic covOGK html covPlot html cushny html delivery html education html epilepsy html estimethod html exAM html foodstamp html fullRank html functionX-class html functionXal-class html glmrob html glmrob.control html h.alpha.n html hbk html heart html huberM html kootenay html lactic html lmrob..D..fit html lmrob..M..fit html lmrob.M.S html lmrob html lmrob.S html lmrob.control html lmrob.fit html lmrob.lar html los html ltsPlot html ltsReg html mc html milk html nlrob-algos html nlrob html nlrob.control html outlierStats html pension html phosphor html pilot html plot-methods html plot.lmrob html possumDiv html predict.glmrob html predict.lmrob html print.lmrob html psiFindc html psiFunc html psi_func-class html pulpfiber html r6pack html radarImage html rankMM html residuals.glmrob html robustbase-internal html rrcov.control html salinity html scaleTau2 html sigma html smoothWgt html splitFrame html starsCYG html steamUse html summarizeRobWeights html summary.glmrob html summary.lmrob html summary.lts html summary.mcd html summary.nlrob html telef html tolEllipsePlot html toxicity html tukeyPsi1 html vaso html wagnerGrowth html weights.lmrob html wgt.himedian html wood html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robustbase) Making 'packages.html' ... done * installing *source* package 'sandwich' ... ** package 'sandwich' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sandwich' finding HTML links ... done InstInnovation html Investment html NeweyWest html PetersenCL html PublicSchools html bread html estfun html isoacf html kweights html lrvar html meat html sandwich html vcovBS html Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:52: file link 'cov' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:60: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:77: file link 'cov' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:83: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:115: file link 'glm.fit' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:119: file link 'lm.fit' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpMmTCL8/Rbuild4c44c65461636/sandwich/man/vcovBS.Rd:119: file link 'qr.coef' in package 'base' does not exist and so has been treated as a topic vcovCL html vcovHAC html vcovHC html vcovOPG html vcovPC html vcovPL html weightsAndrews html weightsLumley html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sandwich) Making 'packages.html' ... done * installing *source* package 'prodlim' ... ** package 'prodlim' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c GMLE.c -o GMLE.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c IntIndex.c -o IntIndex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c icens_prodlim.c -o icens_prodlim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c icens_prodlim_ml.c -o icens_prodlim_ml.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c iindex.c -o iindex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c life_table.c -o life_table.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c loo.c -o loo.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c neighborhood.c -o neighborhood.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c predict.c -o predict.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c predict_individual_survival.c -o predict_individual_survival.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c prodlim.c -o prodlim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c prodlim_clustersurv.c -o prodlim_clustersurv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c prodlim_comprisk.c -o prodlim_comprisk.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c prodlim_multistates.c -o prodlim_multistates.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c prodlim_surv.c -o prodlim_surv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c sindex.c -o sindex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c summary_prodlim.c -o summary_prodlim.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o prodlim.so GMLE.o IntIndex.o icens_prodlim.o icens_prodlim_ml.o iindex.o init.o life_table.o loo.o neighborhood.o predict.o predict_individual_survival.o prodlim.o prodlim_clustersurv.o prodlim_comprisk.o prodlim_multistates.o prodlim_surv.o sindex.o summary_prodlim.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-prodlim/00new/prodlim/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'prodlim' finding HTML links ... done EventHistory.frame html Hist html List2Matrix html PercentAxis html SimCompRisk html SimSurv html SmartControl html atRisk html backGround html checkCauses html confInt html crModel html dimColor html getEvent html getStates html jackknife html leaveOneOut html markTime html meanNeighbors html model.design html neighborhood html parseSpecialNames html plot.Hist html plot.prodlim html plotCompetingRiskModel html plotIllnessDeathModel html predict.prodlim html predictSurvIndividual html print.prodlim html prodlim html quantile.prodlim html redist html row.match html sindex html stopTime html strip.terms html summary.Hist html summary.prodlim html survModel html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prodlim) Making 'packages.html' ... done * installing *source* package 'gplots' ... ** package 'gplots' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gplots' finding HTML links ... done angleAxis html balloonplot html bandplot html barplot2 html boxplot2 html ci2d html col2hex html colorpanel html gplots-defunct html gplots-deprecated html heatmap.2 html hist2d html lmplot2 html lowess html ooplot html overplot html plotCI html plotmeans html qqnorm.aov html reorder html Rd warning: /tmp/RtmpeudcEq/R.INSTALL550b6ea80743/gplots/man/reorder.Rd:56: file link 'reorder' in package 'stats' does not exist and so has been treated as a topic residplot html rich.colors html rtPCR html sinkplot html space html textplot html venn html wapply html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gplots) Making 'packages.html' ... done * installing *source* package 'openssl' ... ** package 'openssl' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 ** libs rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-openssl/00new/openssl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'openssl' finding HTML links ... done aes_cbc html base64_encode html bignum html certificates html curve25519 html ec_dh html encrypt_envelope html fingerprint html hash html keygen html my_key html openssl html openssl_config html pbkdf html pkcs12 html rand_bytes html read_key html reexports html rsa_encrypt html signatures html write_pem html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openssl) Making 'packages.html' ... done * installing *source* package 'htmlwidgets' ... ** package 'htmlwidgets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Failed with error: 'there is no package called 'shiny'' ** help *** installing help indices converting help for package 'htmlwidgets' finding HTML links ... done JS html JSEvals html createWidget html Rd warning: /tmp/RtmpfiGeYN/R.INSTALL56aa1cefef4b/htmlwidgets/man/createWidget.Rd:25: file link 'toJSON' in package 'jsonlite' does not exist and so has been treated as a topic getDependency html htmlwidgets-package html htmlwidgets-shiny html onRender html onStaticRenderComplete html Rd warning: /tmp/RtmpfiGeYN/R.INSTALL56aa1cefef4b/htmlwidgets/man/onStaticRenderComplete.Rd:15: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic prependContent html Rd warning: /tmp/RtmpfiGeYN/R.INSTALL56aa1cefef4b/htmlwidgets/man/prependContent.Rd:15: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic saveWidget html scaffoldWidget html setWidgetIdSeed html sizingPolicy html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) Making 'packages.html' ... done * installing *source* package 'classInt' ... ** package 'classInt' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c fish1.f -o fish1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o classInt.so fish1.o init.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-classInt/00new/classInt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'classInt' finding HTML links ... done classIntervals html Rd warning: /tmp/RtmpmBKM8p/R.INSTALL571c5d613b17/classInt/man/classIntervals.Rd:105: file link 'shingle' in package 'lattice' does not exist and so has been treated as a topic findColours html findCols html getBclustClassIntervals html jenks.tests html logLik.classIntervals html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (classInt) Making 'packages.html' ... done * installing *source* package 'TTR' ... ** package 'TTR' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c adjRatios.c -o adjRatios.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c aroon.c -o aroon.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c moving_averages.c -o moving_averages.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c percent_rank.c -o percent_rank.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c runfun.c -o runfun.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c sar.c -o sar.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c wilderSum.c -o wilderSum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/xts/include' -I/usr/local/include -fpic -g -O2 -c zigzag.c -o zigzag.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o TTR.so adjRatios.o aroon.o init.o moving_averages.o percent_rank.o runfun.o sar.o wilderSum.o zigzag.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-TTR/00new/TTR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TTR' finding HTML links ... done ADX html ATR html CCI html CLV html CMF html CMO html CTI html DPO html DVI html DonchianChannel html EMV html GMMA html KST html MACD html MFI html MovingAverages html OBV html RSI html SAR html SNR html TDI html TRIX html TTR html TTRtools html VHF html WPR html WebData html ZigZag html adjRatios html aroon html bollingerBands html chaikinAD html chaikinVolatility html changes html priceBands html rollFun html runFun html runPercentRank html stochastics html ttrc html ultimateOscillator html volatility html williamsAD html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TTR) Making 'packages.html' ... done * installing *source* package 'vctrs' ... ** package 'vctrs' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'vctrs' finding HTML links ... done as-is html data_frame html df_list html df_ptype2 html faq-compatibility-types html faq-error-incompatible-attributes html faq-error-scalar-type html fields html howto-faq-coercion-data-frame html howto-faq-coercion html howto-faq-fix-scalar-type-error html int64 html internal-faq-ptype2-identity html list_of html maybe_lossy_cast html name_spec html new_data_frame html new_date html new_factor html new_list_of html new_partial html new_rcrd html new_vctr html obj_print html op-empty-default html partial_factor html partial_frame html reference-faq-compatibility html s3_register html table html theory-faq-coercion html unspecified html vctrs-conditions html vctrs-data-frame html vctrs-package html vec-rep html vec_arith html vec_as_index html vec_as_location html vec_as_names html vec_as_names_legacy html vec_as_subscript html vec_assert html vec_bind html vec_c html vec_cast html vec_cbind_frame_ptype html vec_chop html vec_compare html vec_count html vec_data html vec_default_ptype2 html vec_detect_complete html vec_duplicate html vec_empty html vec_equal html vec_fill_missing html vec_group html vec_identify_runs html vec_init html vec_is_list html vec_list_cast html vec_match html vec_math html vec_names html vec_order html vec_proxy html vec_proxy_compare html vec_proxy_equal html vec_ptype html vec_ptype2 html vec_ptype_full html vec_recycle html vec_repeat html vec_seq_along html vec_size html vec_slice html vec_split html vec_type html vec_unique html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) Making 'packages.html' ... done * installing *source* package 'reshape2' ... ** package 'reshape2' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o reshape2.so RcppExports.o melt.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-reshape2/00new/reshape2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reshape2' finding HTML links ... done add_margins html cast html Rd warning: /tmp/RtmpvSZ7RN/R.INSTALL597440239bce/reshape2/man/cast.Rd:77: file link '.' in package 'plyr' does not exist and so has been treated as a topic colsplit html french_fries html guess_value html margins html melt html melt.array html melt.data.frame html melt.default html melt.list html melt_check html parse_formula html recast html smiths html tips html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape2) Making 'packages.html' ... done * installing *source* package 'pROC' ... ** package 'pROC' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppVersion.cpp -o RcppVersion.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c delong.cpp -o delong.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c perfsAll.cpp -o perfsAll.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o pROC.so RcppExports.o RcppVersion.o delong.o perfsAll.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-pROC/00new/pROC/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pROC' finding HTML links ... done aSAH html are.paired html auc html ci html ci.auc html ci.coords html ci.se html ci.sp html ci.thresholds html coords html coords_transpose html cov html ggroc html groupGeneric html has.partial.auc html lines.roc html multiclass html pROC-package html plot.ci html plot.roc html power.roc.test html print html roc html roc.test html smooth html var html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pROC) Making 'packages.html' ... done * installing *source* package 'scales' ... ** package 'scales' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scales' finding HTML links ... done Range html alpha html area_pal html asn_trans html atanh_trans html boxcox_trans html breaks_extended html breaks_log html breaks_pretty html breaks_width html brewer_pal html Rd warning: /tmp/Rtmpp59vAG/R.INSTALL5a881949762e/scales/man/brewer_pal.Rd:16: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic cbreaks html col2hcl html col_numeric html colour_ramp html cscale html date_breaks html date_trans html demo_continuous html dichromat_pal html div_gradient_pal html dscale html exp_trans html expand_range html format_format html fullseq html gradient_n_pal html grey_pal html hms_trans html hue_pal html identity_pal html identity_trans html label_bytes html label_date html label_dollar html label_number html label_number_auto html label_number_si html label_ordinal html label_parse html label_percent html label_pvalue html label_scientific html label_wrap html linetype_pal html log_trans html manual_pal html minor_breaks_width html muted html number html number_bytes_format html oob html probability_trans html reciprocal_trans html regular_minor_breaks html rescale html rescale_max html rescale_mid html rescale_none html rescale_pal html reverse_trans html scales-package html seq_gradient_pal html shape_pal html show_col html sqrt_trans html time_trans html train_continuous html train_discrete html trans_breaks html trans_format html trans_new html trans_range html unit_format html viridis_pal html yj_trans html zero_range html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) Making 'packages.html' ... done * installing *source* package 'doParallel' ... ** package 'doParallel' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'doParallel' finding HTML links ... done doParallel-package html registerDoParallel html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doParallel) Making 'packages.html' ... done * installing *source* package 'maxLik' ... ** package 'maxLik' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maxLik' finding HTML links ... done activePar html finding level-2 HTML links ... done bread.maxLik html compareDerivatives html condiNumber html fnSubset html gradient html hessian html logLik.maxLik html maxBFGS html maxControl html maxLik-internal html maxLik-methods html maxLik-package html maxLik html maxNR html maxSGA html maxValue html maximType html nIter html nObs html nParam html numericGradient html objectiveFn html returnCode html storedValues html summary.maxLik html summary.maxim html sumt html vcov.maxLik html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maxLik) Making 'packages.html' ... done * installing *source* package 'conquer' ... ** package 'conquer' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c smqr.cpp -o smqr.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o conquer.so RcppExports.o smqr.o -fopenmp -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-conquer/00new/conquer/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'conquer' finding HTML links ... done conquer-package html conquer html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conquer) Making 'packages.html' ... done * installing *source* package 'rrcov' ... ** package 'rrcov' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R-rng4ftn.c -o R-rng4ftn.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c covOPW.c -o covOPW.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c ds11.f -o ds11.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fast-mve.c -o fast-mve.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c fsada.f -o fsada.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rrcov_init.c -o rrcov_init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sest.c -o sest.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rrcov.so R-rng4ftn.o covOPW.o ds11.o fast-mve.o fsada.o rrcov_init.o sest.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rrcov/00new/rrcov/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rrcov' finding HTML links ... done Appalachia html Cascades html Cov-class html CovClassic-class html CovClassic html CovControl-class html CovControlMMest-class html CovControlMMest html CovControlMcd-class html CovControlMcd html finding level-2 HTML links ... done CovControlMest-class html CovControlMest html CovControlMrcd-class html CovControlMrcd html CovControlMve-class html CovControlMve html CovControlOgk-class html CovControlOgk html CovControlSde-class html CovControlSde html CovControlSest-class html CovControlSest html CovMMest-class html CovMMest html CovMcd-class html CovMcd html CovMest-class html CovMest html CovMrcd-class html CovMrcd html CovMve-class html CovMve html CovOgk-class html CovOgk html CovRobust-class html CovRobust html CovSde-class html CovSde html CovSest-class html CovSest html Lda-class html LdaClassic-class html LdaClassic html LdaPP-class html LdaPP html LdaRobust-class html Linda-class html Linda html OsloTransect html Pca-class html PcaClassic-class html PcaClassic html PcaCov-class html PcaCov html PcaGrid-class html PcaGrid html PcaHubert-class html PcaHubert html PcaLocantore-class html PcaLocantore html PcaProj-class html PcaProj html PcaRobust-class html PredictLda-class html PredictQda-class html Qda-class html QdaClassic-class html QdaClassic html QdaCov-class html QdaCov html QdaRobust-class html SummaryCov-class html SummaryCovRobust-class html SummaryLda-class html SummaryPca-class html SummaryQda-class html T2.test html Wilks.test html biplot html bus html bushmiss html covMest-deprecated html diabetes html estimate-methods html fish html getCenter-methods html getEllipse html getLoadings-methods html hemophilia html isSingular html lmom32 html lmom33 html maryo html octane html olitos html pca.distances html pca.scoreplot html plot-methods html pottery html rice html rrcov-utils html salmon html scorePlot html soil html un86 html wages html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rrcov) Making 'packages.html' ... done * installing *source* package 'spData' ... ** package 'spData' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spData' finding HTML links ... done SplashDams html afcon html alaska html auckland html baltimore html boston html coffee_data html columbus html congruent html cycle_hire html cycle_hire_osm html eire html elect80 html elev html getisord html grain html hawaii html hopkins html house html huddersfield html jenks71 html lnd html nc.sids html nydata html nz html nz_height html seine html state.vbm html urban_agglomerations html us_states html us_states_df html used.cars html wheat html world html worldbank_df html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spData) Making 'packages.html' ... done * installing *source* package 'gmodels' ... ** package 'gmodels' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gmodels' finding HTML links ... done CrossTable html ci html coefFrame html estimable html fast.prcomp html fit.contrast html glh.test html make.contrasts html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gmodels) Making 'packages.html' ... done * installing *source* package 'callr' ... ** package 'callr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'callr' finding HTML links ... done callr html convert_and_check_my_args html default_repos html get_result html new_callr_error html r html r_bg html r_copycat html r_process html r_process_options html r_session html r_session_debug html r_session_options html r_vanilla html rcmd html rcmd_bg html rcmd_copycat html rcmd_process html rcmd_process_options html rcmd_safe_env html reexports html rscript html rscript_process html rscript_process_options html supported_archs html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) Making 'packages.html' ... done * installing *source* package 'pkgload' ... ** package 'pkgload' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pkgload' finding HTML links ... done check_dep_version html check_suggested html dev_example html dev_help html dev_meta html has_tests html help html imports_env html inst html is_dev_package html load_all html load_code html load_data html load_dll html load_imports html ns_env html package_file html packages html parse_deps html parse_ns_file html pkg_env html pkgtest html run_pkg_hook html system.file html unload html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgload) Making 'packages.html' ... done * installing *source* package 'strucchange' ... ** package 'strucchange' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strucchange_functions.c -o strucchange_functions.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strucchange_init.c -o strucchange_init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o strucchange.so strucchange_functions.o strucchange_init.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-strucchange/00new/strucchange/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'strucchange' finding HTML links ... done BostonHomicide html DJIA html Fstats html GermanM1 html Grossarl html PhillipsCurve html RealInt html SP2001 html USIncExp html boundary.Fstats html boundary html boundary.efp html boundary.mefp html breakdates html breakfactor html breakpoints html catL2BB html confint.breakpointsfull html durab html efp html efpFunctional html gefp html logLik.breakpoints html mefp html plot.Fstats html plot.efp html plot.mefp html recresid html Rd warning: /tmp/RtmplWQC9x/R.INSTALL5ec35ecf1c4c/strucchange/man/recresid.Rd:27: file link 'lm.fit' in package 'stats' does not exist and so has been treated as a topic root.matrix html scPublications html sctest.Fstats html sctest html sctest.default html sctest.efp html sctest.formula html solveCrossprod html strucchange.internal html supLM html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (strucchange) Making 'packages.html' ... done * installing *source* package 'betareg' ... ** package 'betareg' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'betareg' finding HTML links ... done CarTask html FoodExpenditure html GasolineYield html ImpreciseTask html MockJurors html ReadingSkills html StressAnxiety html WeatherTask html betamix html Rd warning: /tmp/RtmpuKc7hs/Rbuild73c867a3f1dc6/betareg/man/betamix.Rd:67: file link 'FLXPconstant' in package 'flexmix' does not exist and so has been treated as a topic betareg html Rd warning: /tmp/RtmpuKc7hs/Rbuild73c867a3f1dc6/betareg/man/betareg.Rd:112: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic betareg.control html betatree html gleverage html plot.betareg html predict.betareg html residuals.betareg html summary.betareg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (betareg) Making 'packages.html' ... done ERROR: dependency 'partitions' is not available for package 'binGroup' * removing '/opt/R/4.0.3/lib/R/library/binGroup' * installing *source* package 'emmeans' ... ** package 'emmeans' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'emmeans' finding HTML links ... done CLD.emmGrid html MOats html add_grouping html as.emmGrid html auto.noise html contrast html eff_size html emmGrid-class html emmGrid-methods html emm_list-object html emm_options html emmc-functions html emmeans-package html emmeans html emmip html emmobj html emtrends html extending-emmeans html feedlot html fiber html glht-support html hpd.summary html joint_tests html make.tran html mcmc-support html models html neuralgia html nutrition html oranges html pigs html plot html pwpm html pwpp html qdrg html rbind.emmGrid html ref_grid html regrid html summary.emmGrid html ubds html update.emmGrid html wrappers html xtable.emmGrid html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emmeans) Making 'packages.html' ... done * installing *source* package 'epiR' ... ** package 'epiR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'epiR' finding HTML links ... done epi.2by2 html epi.RtoBUGS html epi.SClip html epi.about html epi.asc html epi.betabuster html epi.bohning html epi.ccc html epi.conf html epi.convgrid html epi.cp html epi.cpresids html epi.descriptives html epi.dgamma html epi.directadj html epi.dms html epi.dsl html epi.edr html epi.empbayes html epi.epidural html epi.herdtest html epi.incin html epi.indirectadj html epi.insthaz html epi.interaction html epi.iv html epi.kappa html epi.ltd html epi.mh html epi.nomogram html epi.occc html epi.offset html epi.pooled html epi.popsize html epi.prcc html epi.prev html epi.psi html epi.smd html epi.smr html epi.sscc html epi.ssclus1estb html epi.ssclus1estc html epi.ssclus2estb html epi.ssclus2estc html epi.sscohortc html epi.sscohortt html epi.sscompb html epi.sscompc html epi.sscomps html epi.ssdetect html epi.ssdxtest html epi.ssequb html epi.ssequc html epi.ssninfb html epi.ssninfc html epi.sssimpleestb html epi.sssimpleestc html epi.ssstrataestb html epi.ssstrataestc html epi.sssupb html epi.sssupc html epi.ssxsectn html epi.tests html rsu.adjrisk html rsu.dxtest html rsu.epinf html rsu.pfree.equ html rsu.pfree.rs html rsu.pstar html rsu.sep html rsu.sep.cens html rsu.sep.pass html rsu.sep.rb html rsu.sep.rb1rf html rsu.sep.rb2rf html rsu.sep.rb2st html rsu.sep.rbvarse html rsu.sep.rs html rsu.sep.rs2st html rsu.sep.rsfreecalc html rsu.sep.rsmult html rsu.sep.rspool html rsu.sep.rsvarse html rsu.spp.rs html rsu.sspfree.rs html rsu.sssep.rb2st1rf html rsu.sssep.rb2st2rf html rsu.sssep.rbmrg html rsu.sssep.rbsrg html rsu.sssep.rs html rsu.sssep.rs2st html rsu.sssep.rsfreecalc html rsu.sssep.rspool html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (epiR) Making 'packages.html' ... done * installing *source* package 'fixest' ... ** package 'fixest' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c convergence.cpp -o convergence.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c demeaning.cpp -o demeaning.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lm_related.cpp -o lm_related.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c misc_funs.cpp -o misc_funs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c parallel_funs.cpp -o parallel_funs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c quf.cpp -o quf.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fixest.so RcppExports.o convergence.o demeaning.o lm_related.o misc_funs.o parallel_funs.o quf.o -fopenmp -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fixest/00new/fixest/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fixest' finding HTML links ... done AIC.fixest html BIC.fixest html aggregate.fixest html as.list.fixest_multi html base_did html bread.fixest html cash-.fixest_multi html coef.fixest html coefplot html coeftable html collinearity html confint.fixest html demean html deviance.fixest html did_means html dof html estfun.fixest html etable html feNmlm html feglm html femlm html feols html fitstat html fitstat_register html fitted.fixest html fixef.fixest html fixef_reexported html fixest-deprecated html fixest html formula.fixest html hatvalues.fixest html i html l html lag.formula html logLik.fixest html model.matrix.fixest html nobs.fixest html obs2remove html panel html plot.fixest.fixef html predict.fixest html print.fixest html print.fixest_fitstat html print.fixest_multi html r2 html rep.fixest html resid.fixest html sandwich_reexported html setFixest_coefplot html setFixest_dict html setFixest_estimation html setFixest_fml html setFixest_notes html setFixest_nthreads html setFixest_se html sigma.fixest html stepwise html style.df html style.tex html sub-.fixest_multi html sub-.fixest_panel html sub-sub-.fixest_multi html summary.fixest html summary.fixest.fixef html summary.fixest.obs2remove html summary.fixest_multi html terms.fixest html to_integer html trade html unpanel html update.fixest html vcov.fixest html wald html weights.fixest html xpd html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fixest) Making 'packages.html' ... done * installing *source* package 'gam' ... ** package 'gam' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c backfit.f -o backfit.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c backlo.f -o backlo.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bsplvd.f -o bsplvd.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bvalue.f -o bvalue.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bvalus.f -o bvalus.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gam_init.c -o gam_init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c linear.f -o linear.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lo.f -o lo.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loessc.c -o loessc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c loessf.f -o loessf.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qsbart.f -o qsbart.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sbart.c -o sbart.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sgram.f -o sgram.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sinerp.f -o sinerp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c splsm.f -o splsm.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sslvrg.f -o sslvrg.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c stxwx.f -o stxwx.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gam.so backfit.o backlo.o bsplvd.o bvalue.o bvalus.o gam_init.o linear.o lo.o loessc.o loessf.o qsbart.o sbart.o sgram.o sinerp.o splsm.o sslvrg.o stxwx.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gam/00new/gam/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gam' finding HTML links ... done anova.gam html gam-internal html gam html gam.control html gam.data html gam.exact html gam.scope html gam.smoothers html kyphosis html lo html na.gam.replace html plot.gam html predict.gam html random html s html step.gam html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gam) Making 'packages.html' ... done * installing *source* package 'glmnet' ... ** package 'glmnet' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c glmnet5dpclean.f -o glmnet5dpclean.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glmnet_init.c -o glmnet_init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pb.c -o pb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c wls.f -o wls.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o glmnet.so glmnet5dpclean.o glmnet_init.o pb.o wls.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-glmnet/00new/glmnet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'glmnet' finding HTML links ... done Cindex html assess.glmnet html beta_CVX html bigGlm html cox.fit html cox.path html cox_obj_function html coxgrad html coxnet.deviance html cv.glmnet html dev_function html deviance.glmnet html elnet.fit html fid html get_cox_lambda_max html get_eta html get_start html glmnet-internal html glmnet-package html glmnet html glmnet.control html glmnet.fit html glmnet.measures html glmnet.path html makeX html mycoxph html mycoxpred html na.replace html obj_function html pen_function html plot.cv.glmnet html plot.glmnet html predict.cv.glmnet html predict.glmnet html predict.glmnetfit html print.cv.glmnet html print.glmnet html response.coxnet html rmult html stratifySurv html survfit.coxnet html survfit.cv.glmnet html use.cox.path html weighted_mean_sd html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmnet) Making 'packages.html' ... done * installing *source* package 'gmm' ... ** package 'gmm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lambda_met.f -o lambda_met.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c src.c -o src.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gmm.so lambda_met.o src.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgomp -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gmm/00new/gmm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gmm' finding HTML links ... done ATEgel html FinRes html Finance html KTest html bread html bwWilhelm html finding level-2 HTML links ... done charStable html coef html confint html estfun html fitted html formula html gel html getDat html getImpProb html getLamb html getModel html gmm html growth html marginal html momentEstim html nsw html plot html print html residuals html smoothG html specTest html summary html sysGmm html tsls html vcov html wage html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gmm) Making 'packages.html' ... done * installing *source* package 'knitr' ... ** package 'knitr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'knitr' finding HTML links ... done Sweave2knitr html all_labels html all_patterns html asis_output html cache_engines html chunk_hook html clean_cache html combine_words html finding level-2 HTML links ... done current_input html dep_auto html dep_prev html engine_output html fig_chunk html fig_path html hook_animation html hook_document html hook_plot html image_uri html imgur_upload html include_graphics html include_url html inline_expr html is_low_change html kable html knit html knit2html html knit2pandoc html knit2pdf html knit2wp html knit_child html knit_code html knit_engines html knit_exit html knit_expand html knit_filter html knit_global html knit_hooks html knit_meta html knit_params html knit_params_yaml html knit_patterns html knit_print html knit_rd html knit_theme html knit_watch html knitr-package html load_cache html opts_chunk html opts_hooks html opts_knit html opts_template html output_hooks html output_type html pandoc html pat_fun html plot_crop html rand_seed html raw_block html raw_output html read_chunk html read_rforge html rocco html rst2pdf html set_alias html set_header html set_parent html sew html spin html spin_child html stitch html vignette_engines html wrap_rmd html write_bib html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) Making 'packages.html' ... done * installing *source* package 'ks' ... ** package 'ks' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ks.so ks.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ks/00new/ks/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ks' finding HTML links ... done Hbcv html Hlscv html Hnm html Hns html Hpi html Hscv html air html binning html cardio html contour html grevillea html histde html hsct html ise.mixt html kcde html kcopula html kda html kdcde html kdde html kde html kde.boundary html kde.local.test html kde.test html kde.truncate html kdr html kfe html kfs html kms html kroc html ks-internal html ks-package html ksupp html mixt html plot.histde html plot.kcde html plot.kda html plot.kdde html plot.kde html plot.kde.loctest html plot.kde.part html plot.kfs html plot.kroc html plotmixt html pre.transform html quake html rkde html tempb html unicef html vector html vkde html worldbank html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ks) Making 'packages.html' ... done * installing *source* package 'lavaan' ... ** package 'lavaan' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lavaan' finding HTML links ... done Demo.growth html Demo.twolevel html FacialBurns html HolzingerSwineford1939 html InformativeTesting html PoliticalDemocracy html bootstrap html cfa html estfun html fitMeasures html getCov html Rd warning: /tmp/RtmpPWkZt3/R.INSTALL641c10b94d43/lavaan/man/getCov.Rd:39: file link 'cov2cor' in package 'stats' does not exist and so has been treated as a topic growth html inspectSampleCov html lavCor html lavExport html lavInspect html lavListInspect html lavMatrixRepresentation html lavNames html lavOptions html lavParTable html lavPredict html lavResiduals html lavTables html lavTablesFit html lavTestLRT html lavTestScore html lavTestWald html lav_constraints html lav_data html lav_func html lav_matrix html lav_model html lav_partable html lav_samplestats html lavaan-class html Rd warning: /tmp/RtmpPWkZt3/R.INSTALL641c10b94d43/lavaan/man/lavaan-class.Rd:127: file link 'BIC' in package 'stats' does not exist and so has been treated as a topic lavaan html lavaanList-class html lavaanList html model.syntax html modificationIndices html mplus2lavaan html mplus2lavaan.modelSyntax html parameterEstimates html plot.InformativeTesting html sem html simulateData html standardizedSolution html varTable html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lavaan) Making 'packages.html' ... done * installing *source* package 'lfe' ... ** package 'lfe' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for timed semaphore wait... yes checking for library containing pthread_setname_np... none required configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h config.status: src/config.h is unchanged ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c Crowsum.c -o Crowsum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c demean.c -o demean.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c factor.c -o factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c kaczmarz.c -o kaczmarz.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c lfe.c -o lfe.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fopenmp -pthread -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lfe.so Crowsum.o demean.o factor.o kaczmarz.o lfe.o utils.o -pthread -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lfe/00new/lfe/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lfe' finding HTML links ... done bccorr html btrap html cgsolve html chainsubset html compfactor html condfstat html demeanlist html diammatrix html efactory html felm html fevcov html fixedse html getfe html is.estimable html kaczmarz html lfe-package html makeDmatrix html mctrace html nlexpect html sargan html summary.felm html varvars html waldtest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lfe) Making 'packages.html' ... done * installing *source* package 'lme4' ... ** package 'lme4' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -c external.cpp -o external.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -c glmFamily.cpp -o glmFamily.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -c optimizer.cpp -o optimizer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -c predModule.cpp -o predModule.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -c respModule.cpp -o respModule.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lme4.so external.o glmFamily.o optimizer.o predModule.o respModule.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lme4/00new/lme4/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lme4' finding HTML links ... done Arabidopsis html Dyestuff html GHrule html GQdk html InstEval html NelderMead-class html Nelder_Mead html Pastes html Penicillin html VarCorr html VerbAgg html allFit html bootMer html Rd warning: /tmp/RtmpVwC1q9/R.INSTALL673737885732/lme4/man/bootMer.Rd:71: file link 'clusterExport' in package 'parallel' does not exist and so has been treated as a topic cake html cbpp html checkConv html confint.merMod html convergence html devcomp html devfun2 html drop1.merMod html dummy html expandDoubleVerts html factorize html findbars html fixef html fortify html getME html glmFamily-class html glmFamily html glmer html glmer.nb html Rd warning: /tmp/RtmpVwC1q9/R.INSTALL673737885732/lme4/man/glmer.nb.Rd:9: file link 'theta.ml' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpVwC1q9/R.INSTALL673737885732/lme4/man/glmer.nb.Rd:34: file link 'theta.ml' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpVwC1q9/R.INSTALL673737885732/lme4/man/glmer.nb.Rd:65: file link 'theta.ml' in package 'MASS' does not exist and so has been treated as a topic glmerLaplaceHandle html golden-class html grouseticks html hatvalues.merMod html influence.merMod html isNested html isREML html isSingular html lmList html lmList4-class html lmResp-class html lmResp html lme4-package html lme4_testlevel html lmer html lmerControl html finding level-2 HTML links ... done merMod-class html merPredD-class html merPredD html mkMerMod html mkReTrms html mkRespMod html mkSimulationTemplate html mkVarCorr html modular html ngrps html nlformula html nlmer html nloptwrap html nobars html plot.merMod html plots.thpr html predict.merMod html profile-methods html pvalues html ranef html rePCA html rePos-class html rePos html refit html refitML html residuals.merMod html sigma html simulate.formula html simulate.merMod html sleepstudy html subbars html troubleshooting html utilities html vcconv html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lme4) Making 'packages.html' ... done * installing *source* package 'margins' ... ** package 'margins' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'margins' finding HTML links ... done cplot html finding level-2 HTML links ... done Rd warning: /tmp/Rtmp1D888r/R.INSTALL68015d589afc/margins/man/cplot.Rd:323: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp1D888r/R.INSTALL68015d589afc/margins/man/cplot.Rd:347: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp1D888r/R.INSTALL68015d589afc/margins/man/cplot.Rd:349: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic dydx html Rd warning: /tmp/Rtmp1D888r/R.INSTALL68015d589afc/margins/man/dydx.Rd:88: file link 'contr.poly' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp1D888r/R.INSTALL68015d589afc/margins/man/dydx.Rd:88: file link 'contr.treatment' in package 'stats' does not exist and so has been treated as a topic marginal_effects html margins html persp html plot.margins html reexports html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (margins) Making 'packages.html' ... done * installing *source* package 'multcomp' ... ** package 'multcomp' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'multcomp' finding HTML links ... done adevent html cftest html cholesterol html cld html cml html contrMat html detergent html fattyacid html glht html litter html methods html mmm html modelparm html mtept html parm html plot.cld html recovery html sbp html trees513 html waste html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multcomp) Making 'packages.html' ... done * installing *source* package 'orcutt' ... ** package 'orcutt' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'orcutt' finding HTML links ... done cochrane.orcutt html icecream html orcutt-package html predict.orcutt html print.orcutt html print.summary.orcutt html residual.orcutt html summary.orcutt html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orcutt) Making 'packages.html' ... done * installing *source* package 'psych' ... ** package 'psych' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'psych' finding HTML links ... done 00.psych-package html AUC html Garcia html Gleser html Gorsuch html Harman html ICC html ICLUST html ICLUST.cluster html ICLUST.graph html ICLUST.rgraph html ICLUST.sort html KMO html Pinv html Promax html SD html Schmid.Leiman html Tucker html VSS html VSS.parallel html VSS.plot html VSS.scree html Yule html alpha html anova.psych html bassAckward html best.scales html bfi html bi.bars html bifactor html biplot.psych html block.random html bock.table html cattell html circ.tests html cluster.cor html cluster.fit html cluster.loadings html cluster.plot html cluster2keys html cohen.d html comorbidity html cor.ci html cor.plot html cor.smooth html cor.wt html cor2dist html corFiml html corr.test html correct.cor html cortest.bartlett html cortest.mat html cosinor html count.pairwise html cta html densityBy html deprecated html describe html describe.by html diagram html draw.tetra html dummy.code html dwyer html eigen.loadings html ellipses html error.bars html error.bars.by html error.circles html error.crosses html error.dots html esem html fa html fa.diagram html fa.extension html fa.lookup html fa.parallel html fa.random html fa.sort html faCor html faMulti html factor.congruence html factor.fit html factor.model html factor.residuals html factor.rotate html factor.scores html factor.stats html factor2cluster html fisherz html fparse html geometric.mean html glb.algebraic html guttman html harmonic.mean html headtail html iclust.diagram html interp.median html irt.fa html irt.item.diff.rasch html irt.person.rasch html irt.responses html kaiser html kappa html logistic html lowerUpper html make.keys html manhattan html mat.sort html matrix.addition html mediate html misc html mixed.cor html mssd html multi.hist html multilevel.reliability html omega html omega.graph html outlier html p.rep html paired.r html pairs.panels html parcels html partial.r html phi html phi.demo html phi2poly html plot.psych html polar html polychor.matrix html predict.psych html principal html print.psych html r.test html range.correction html rescale html residuals.psych html reverse.code html sat.act html scaling.fits html scatter.hist html schmid html score.alpha html score.irt html score.items html score.multiple.choice html scoreWtd html scrub html set.cor html sim html sim.VSS html sim.anova html sim.congeneric html sim.hierarchical html sim.irt html sim.item html sim.multilevel html sim.omega html sim.structural html simulation.circ html skew html smc html spengler html spider html statsBy html structure.diagram html structure.list html super.matrix html table2matrix html tal_or html test.irt html test.psych html testRetest html tetrachor html thurstone html tr html unidim html winsor html withinBetween html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (psych) Making 'packages.html' ... done * installing *source* package 'survey' ... ** package 'survey' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survey' finding HTML links ... done HR html SE html anova.svyglm html api html as.fpc html as.svrepdesign html as.svydesign2 html barplot.svystat html bootweights html brrweights html calibrate html compressWeights html confint.svyglm html crowd html dimnames.DBIsvydesign html election html estweights html fpc html ftable.svystat html hadamard html hospital html make.calfun html marginpred html mu284 html nhanes html nonresponse html open.DBIsvydesign html paley html pchisqsum html postStratify html psrsq html rake html regTermTest html scd html stratsample html subset.survey.design html surveyoptions html surveysummary html svrVar html svrepdesign html svy.varcoef html svyCprod html svyby html svycdf html svychisq html svyciprop html svycontrast html svycoplot html svycoxph html svycralpha html svydesign html svyfactanal html svyglm html svyhist html svyivreg html svykappa html svykm html svyloglin html svylogrank html svymle html svynls html svyolr html svyplot html svyprcomp html svypredmeans html svyquantile html svyranktest html svyratio html svyrecvar html svysmooth html svystandardize html svysurvreg html svyttest html trimWeights html twophase html update.survey.design html weights.survey.design html with.svyimputationList html withPV.survey.design html withReplicates html yrbs html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survey) Making 'packages.html' ... done * installing *source* package 'hms' ... ** package 'hms' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hms' finding HTML links ... done Deprecated html hms-package html hms html finding level-2 HTML links ... done parse_hms html round_hms html vec_cast.hms html vec_ptype2.hms html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hms) Making 'packages.html' ... done * installing *source* package 'ipred' ... ** package 'ipred' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SdiffKM.c -o SdiffKM.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ipred.so SdiffKM.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ipred/00new/ipred/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ipred' finding HTML links ... done DLBCL html GlaucomaMVF html Smoking html bagging html bootest html control.errorest html cv html dystrophy html errorest html inbagg html inclass html ipred-internal html ipredknn html kfoldcv html mypredict.lm html predict.bagging html predict.inbagg html predict.inclass html predict.ipredknn html predict.slda html print.bagging html print.cvclass html print.inbagg html print.inclass html prune.bagging html rsurv html sbrier html slda html summary.bagging html summary.inbagg html summary.inclass html varset html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ipred) Making 'packages.html' ... done * installing *source* package 'tidyselect' ... ** package 'tidyselect' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tidyselect' finding HTML links ... done all_of html eval_select html Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/eval_select.Rd:38: file link 'enquo' in package 'rlang' does not exist and so has been treated as a topic everything html faq-external-vector html faq-selection-context html language html Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:24: file link 'last_col' in package 'tidyselect' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:30: file link 'ends_with' in package 'tidyselect' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:31: file link 'contains' in package 'tidyselect' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:32: file link 'matches' in package 'tidyselect' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:33: file link 'num_range' in package 'tidyselect' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/language.Rd:41: file link 'any_of' in package 'tidyselect' does not exist and so has been treated as a topic one_of html peek_vars html poke_vars html reexports html Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/reexports.Rd:17: file link 'enquo' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/reexports.Rd:17: file link 'quo' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/reexports.Rd:17: file link 'quo_name' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/reexports.Rd:17: file link 'quos' in package 'rlang' does not exist and so has been treated as a topic starts_with html tidyselect-package html vars_pull html Rd warning: /tmp/RtmpyPm2bo/R.INSTALL6b3434e16d6d/tidyselect/man/vars_pull.Rd:23: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic vars_select html vars_select_helpers html where html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyselect) Making 'packages.html' ... done * installing *source* package 'pillar' ... ** package 'pillar' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pillar' finding HTML links ... done align html char html colonnade html ctl_new_pillar html deprecated html dim_desc html expect_known_display html extra_cols html format_glimpse html format_tbl html format_type_sum html get_extent html glimpse html new_ornament html finding level-2 HTML links ... done new_pillar html new_pillar_component html new_pillar_shaft html new_pillar_title html new_pillar_type html new_tbl_format_setup html num html pillar-package html pillar html pillar_shaft html squeeze html style_subtle html tbl_format_body html tbl_format_footer html tbl_format_header html tbl_format_setup html tbl_sum html type_sum html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) Making 'packages.html' ... done * installing *source* package 'ROCR' ... ** package 'ROCR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ROCR' finding HTML links ... done ROCR.hiv html ROCR.simple html ROCR.xval html performance-class html performance html plot-methods html prediction-class html prediction html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROCR) Making 'packages.html' ... done * installing *source* package 'httr' ... ** package 'httr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'httr' finding HTML links ... done BROWSE html DELETE html GET html HEAD html PATCH html POST html PUT html RETRY html Token-class html VERB html add_headers html authenticate html cache_info html config html content html content_type html cookies html get_callback html guess_media html handle html handle_pool html has_content html headers html hmac_sha1 html http_condition html http_error html http_status html http_type html httr-package html httr_dr html httr_options html init_oauth1.0 html init_oauth2.0 html insensitive html jwt_signature html modify_url html oauth1.0_token html oauth2.0_token html oauth_app html oauth_callback html oauth_endpoint html oauth_endpoints html oauth_exchanger html oauth_listener html oauth_service_token html oauth_signature html parse_http_date html parse_media html parse_url html progress html response html revoke_all html set_config html set_cookies html sha1_hash html sign_oauth html status_code html stop_for_status html timeout html upload_file html use_proxy html user_agent html verbose html with_config html write_disk html write_function html write_stream html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr) Making 'packages.html' ... done * installing *source* package 'htmlTable' ... ** package 'htmlTable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'htmlTable' finding HTML links ... done SCB html addStyles html concatHtmlTables html getHtmlTableStyle html getHtmlTableTheme html hasHtmlTableStyle html htmlTable html htmlTableWidget-shiny html htmlTableWidget html innerJoinByCommonCols html interactiveTable html outputInt html prAddCells html prAddEmptySpacerCell html prAddSemicolon2StrEnd html prAttr4RgroupAdd html prBindDataListIntoColumns html prConvertDfFactors html prEscapeHtml html prExtractElementsAndConvertToTbl html prGetAlign html prGetCgroupHeader html prGetRgroupLine html prGetRowlabelPos html prGetScriptString html prGetStyle html prGetThead html prIsNotebook html prMergeClr html prPrepInputMatrixDimensions html prPrepareAlign html prPrepareCgroup html prPrepareColors html prPrepareCss html prSkipRownames html prTblNo html prepGroupCounts html pvalueFormatter html setHtmlTableTheme html splitLines4Table html tblNoLast html tblNoNext html tidyHtmlTable html txtInt html txtMergeLines html txtPval html txtRound html vector2string html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlTable) Making 'packages.html' ... done * installing *source* package 'furrr' ... ** package 'furrr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'furrr' finding HTML links ... done furrr-package html furrr_options html future_imap html future_invoke_map html future_map html future_map2 html future_map_if html future_modify html future_options html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (furrr) Making 'packages.html' ... done * installing *source* package 'slider' ... ** package 'slider' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c block.c -o block.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c hop.c -o hop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c index.c -o index.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c names.c -o names.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c params.c -o params.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c segment-tree.c -o segment-tree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c slide-period.c -o slide-period.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c slide.c -o slide.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c slider-vctrs-private.c -o slider-vctrs-private.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c slider-vctrs-public.c -o slider-vctrs-public.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c summary-core-align.cpp -o summary-core-align.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c summary-index.c -o summary-index.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c summary-slide.c -o summary-slide.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/vctrs/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o slider.so block.o hop.o index.o init.o names.o params.o segment-tree.o slide-period.o slide.o slider-vctrs-private.o slider-vctrs-public.o summary-core-align.o summary-index.o summary-slide.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-slider/00new/slider/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'slider' finding HTML links ... done block html hop html hop2 html hop_index html hop_index2 html slide html slide2 html slide_index html slide_index2 html slide_period html slide_period2 html slider-package html summary-index html summary-slide html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slider) Making 'packages.html' ... done * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'sf' * removing '/opt/R/4.0.3/lib/R/library/sf' * installing *source* package 'quantmod' ... ** package 'quantmod' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'quantmod' finding HTML links ... done Defaults html Delt html Lag html Next html OHLC.Transformations html TA html addADX html addBBands html addCCI html addExpiry html addMA html addMACD html addROC html addRSI html addSAR html addSMI html addVo html addWPR html adjustOHLC html attachSymbols html buildData html buildModel html chartSeries html chartTheme html chart_Series html chob-class html chobTA-class html create.binding html fittedModel html getDividends html getFX html getFinancials html getMetals html getModelData html getOptionChain html getQuote html getSplits html getSymbols.FRED html getSymbols.MySQL html getSymbols html getSymbols.SQLite html getSymbols.av html getSymbols.csv html getSymbols.oanda html getSymbols.rda html getSymbols.tiingo html getSymbols.yahoo html getSymbols.yahooj html has html internal-quantmod html is.quantmod html modelData html modelSignal html newTA html options.expiry html peak html periodReturn html quantmod-class html quantmod-defunct html quantmod-package html quantmod.OHLC html saveChart html setSymbolLookup html setTA html specifyModel html tradeModel html zoomChart html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quantmod) Making 'packages.html' ... done * installing *source* package 'glmnetUtils' ... ** package 'glmnetUtils' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'glmnetUtils' finding HTML links ... done cv.glmnet html cva.glmnet html glmnet html glmnet.model.matrix html glmnetUtils html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmnetUtils) Making 'packages.html' ... done * installing *source* package 'lsmeans' ... ** package 'lsmeans' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lsmeans' finding HTML links ... done auto.noise html lsmeans-package html ref.grid-class html finding level-2 HTML links ... done ref.grid html transition html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lsmeans) Making 'packages.html' ... done * installing *source* package 'mfx' ... ** package 'mfx' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mfx' finding HTML links ... done betamfx html betaor html logitmfx html logitor html negbinirr html negbinmfx html poissonirr html poissonmfx html probitmfx html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mfx) Making 'packages.html' ... done * installing *source* package 'plm' ... ** package 'plm' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plm' finding HTML links ... done Cigar html Crime html EmplUK html Gasoline html Grunfeld html Hedonic html LaborSupply html Males html Parity html Produc html RiceFarms html Snmesp html SumHes html Wages html aneweytest html cipstest html cortab html detect.lindep html ercomp html fixef.plm html has.intercept html index.plm html is.pbalanced html is.pconsecutive html is.pseries html lag.plm html make.pbalanced html make.pconsecutive html model.frame.pdata.frame html mtest html nobs.plm html pFtest html pbgtest html pbltest html pbnftest html pbsytest html pcce html pcdtest html pdata.frame html pdim html pdwtest html pggls html pgmm html pgrangertest html pht html phtest html piest html pldv html plm-deprecated html plm-package html plm html plm.fast html plmtest html pmg html pmodel.response html pooltest html pseries html punbalancedness html purtest html pvar html pvcm html pwaldtest html pwartest html pwfdtest html pwtest html r.squared html ranef.plm html re-export_functions html sargan html summary.plm html vcovBK html vcovDC html vcovG html vcovHC.plm html vcovNW html vcovSCC html within_intercept html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plm) Making 'packages.html' ... done * installing *source* package 'quantreg' ... ** package 'quantreg' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c akj.f -o akj.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c boot.f -o boot.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c bound.f -o bound.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c boundc.f -o boundc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c brute.f -o brute.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c chlfct.f -o chlfct.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cholesky.f -o cholesky.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c combos.f -o combos.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crqf.f -o crqf.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crqfnb.f -o crqfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsel05.f -o dsel05.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c etime.f -o etime.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c extract.f -o extract.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c frand.c -o frand.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c grexp.f -o grexp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c idmin.f -o idmin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c iswap.f -o iswap.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c kuantile.f -o kuantile.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c kuantiles.f -o kuantiles.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c linpack.f -o linpack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mcmb.c -o mcmb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c penalty.f -o penalty.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c pfnb.f -o pfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c powell.f -o powell.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c profnb.f -o profnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c pwxy.f -o pwxy.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qfnb.f -o qfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c qselect.f -o qselect.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c quantreg_init.c -o quantreg_init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rls.f -o rls.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rq0.f -o rq0.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rq1.f -o rq1.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rqbr.f -o rqbr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rqfn.f -o rqfn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rqfnb.f -o rqfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rqfnc.f -o rqfnc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rqs.f -o rqs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sakj.f -o sakj.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c sparskit2.f -o sparskit2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c srqfn.f -o srqfn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c srqfnc.f -o srqfnc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c srtpai.f -o srtpai.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o quantreg.so akj.o boot.o bound.o boundc.o brute.o chlfct.o cholesky.o combos.o crqf.o crqfnb.o dsel05.o etime.o extract.o frand.o grexp.o idmin.o iswap.o kuantile.o kuantiles.o linpack.o mcmb.o penalty.o pfnb.o powell.o profnb.o pwxy.o qfnb.o qselect.o quantreg_init.o rls.o rq0.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o rqs.o sakj.o sparskit2.o srqfn.o srqfnc.o srtpai.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-quantreg/00new/quantreg/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'quantreg' finding HTML links ... done Bosco html CobarOre html FAQ html KhmaladzeTest html Mammals html Munge html ParetoTest html Peirce html QTECox html akj html anova.rq html bandwidth.rq html barro html boot.crq html boot.rq html boot.rq.pwxy html boot.rq.pxy html combos html critval html crq html dither html dynrq html engel html gasprice html kuantile html latex html latex.summary.rqs html latex.table html lm.fit.recursive html lprq html nlrq html nlrq.control html plot.KhmaladzeTest html plot.rq.process html plot.rqs html plot.rqss html plot.summary.rqs html predict.rq html predict.rqss html print.KhmaladzeTest html print.rq html print.summary.rq html q489 html qrisk html qss html ranks html rearrange html residuals.nlrq html rq html rq.fit html rq.fit.br html rq.fit.conquer html rq.fit.fnb html rq.fit.fnc html rq.fit.hogg html rq.fit.lasso html rq.fit.pfn html rq.fit.pfnb html rq.fit.ppro html rq.fit.qfnb html rq.fit.scad html rq.fit.sfn html rq.fit.sfnc html rq.object html rq.process.object html rq.wfit html rqProcess html rqs.fit html rqss html rqss.object html sfn.control html srisk html summary.crq html summary.rq html summary.rqss html table.rq html uis html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quantreg) Making 'packages.html' ... done * installing *source* package 'rmarkdown' ... ** package 'rmarkdown' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rmarkdown' finding HTML links ... done all_output_formats html beamer_presentation html compile_notebook html context_document html convert_ipynb html default_output_format html draft html find_external_resources html find_pandoc html github_document html html-dependencies html html_document html html_document_base html finding level-2 HTML links ... done html_fragment html html_notebook html html_notebook_metadata html html_notebook_output html html_vignette html includes html ioslides_presentation html knit_params_ask html knitr_options html knitr_options_html html knitr_options_pdf html latex-dependencies html latex_dependency html md_document html metadata html navbar_html html odt_document html output_format html output_metadata html paged_table html pandoc_args html pandoc_available html pandoc_citeproc_convert html pandoc_convert html pandoc_exec html pandoc_options html pandoc_path_arg html pandoc_self_contained_html html pandoc_template html parse_html_notebook html pdf_document html pkg_file_lua html powerpoint_presentation html publish_site html relative_to html render html render_delayed html render_site html render_supporting_files html resolve_output_format html rmarkdown-package html rmarkdown_format html rmd_metadata html rtf_document html run html shiny_prerendered_chunk html shiny_prerendered_clean html shiny_prerendered_server_start_code html site_resources html slidy_presentation html tufte_handout html word_document html yaml_front_matter html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) Making 'packages.html' ... done * installing *source* package 'robust' ... ** package 'robust' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c gamrob.f -o gamrob.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c glmrob.f -o glmrob.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmrobbi.f -o lmrobbi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmrobfs.f -o lmrobfs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmrobml.f -o lmrobml.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c lmrobmm.f -o lmrobmm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mmprnt.c -o mmprnt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rb.c -o rb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tdmean.f -o tdmean.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tmlfor.f -o tmlfor.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c wblrob.f -o wblrob.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o robust.so compatibility.o gamrob.o glmrob.o lmrobbi.o lmrobfs.o lmrobml.o lmrobmm.o mmprnt.o rb.o tdmean.o tmlfor.o wblrob.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-robust/00new/robust/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'robust' finding HTML links ... done OverlaidDenPlot.fdfm html anova.glmRob html anova.lmRob html breslow.dat html covClassic html covRob html Rd warning: /tmp/RtmpAolga7/R.INSTALL73747f901452/robust/man/covRob.Rd:38: file link 'covMest' in package 'rrcov' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpAolga7/R.INSTALL73747f901452/robust/man/covRob.Rd:87: file link 'covMest' in package 'rrcov' does not exist and so has been treated as a topic covRob.control html ddPlot.covfm html distancePlot.covfm html drop1.lmRob html ellipsesPlot.covfm html fitdstn html fitdstnRob html gammaRob html gammaRob.control html gen.data html glmRob html glmRob.control html glmRob.cubif html glmRob.cubif.control html glmRob.mallows html glmRob.mallows.control html glmRob.misclass html glmRob.misclass.control html glmRob.object html leuk.dat html lmRob.RFPE html lmRob html lmRob.control html lmRob.fit html lmRob.fit.compute html lmRob.object html lognormRob html lognormRob.control html lsRobTest html mallows.dat html plot.covfm html finding level-2 HTML links ... done plot.fdfm html plot.glmRob html plot.lmRob html predict.glmRob html predict.lmRob html qqPlot.fdfm html rb.lmRob html residuals.glmRob html screePlot.covfm html stack.dat html step.lmRob html summary.covfm html summary.glmRob html summary.lmRob html test.lmRob html update.lmRob html weibullRob html weibullRob.control html weight.funs html woodmod.dat html ** building package indices ** testing if installed package can be loaded from temporary location rlm is already registered in the fit.models registry covfm is already registered in the fit.models registry ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location rlm is already registered in the fit.models registry covfm is already registered in the fit.models registry ** testing if installed package keeps a record of temporary installation path * DONE (robust) Making 'packages.html' ... done * installing *source* package 'spelling' ... ** package 'spelling' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spelling' finding HTML links ... done spell_check_files html Rd warning: /tmp/RtmpvWWzFA/R.INSTALL74196a899062/spelling/man/spell_check_files.Rd:15: file link 'dictionary' in package 'hunspell' does not exist and so has been treated as a topic spell_check_package html wordlist html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spelling) Making 'packages.html' ... done * installing *source* package 'vars' ... ** package 'vars' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'vars' finding HTML links ... done A html B html BQ html Canada html Phi html Psi html SVAR html SVEC html VAR html VARselect html arch html causality html coefficients html fanchart html fevd html fitted html irf html logLik html normality html plot html predict html residuals html restrict html roots html serial html stability html summary html vars-deprecated html vec2var html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vars) Making 'packages.html' ... done * installing *source* package 'progress' ... ** package 'progress' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'progress' finding HTML links ... done progress_bar html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progress) Making 'packages.html' ... done * installing *source* package 'cobs' ... ** package 'cobs' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SR.c -o SR.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nrutil.c -o nrutil.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c splines.c -o splines.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o cobs.so SR.o init.o nrutil.o splines.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-cobs/00new/cobs/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cobs' finding HTML links ... done DublinWind html USArmyRoofs html cobs-internal html cobs-methods html cobs html conreg-methods html conreg html drqssbc html exHe html globtemp html interpSplineCon html mk.pt.constr html plot.cobs html predict.cobs html qbsks html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cobs) Making 'packages.html' ... done * installing *source* package 'tibble' ... ** package 'tibble' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tibble' finding HTML links ... done add_column html add_row html as_tibble html deprecated html finding level-2 HTML links ... done enframe html formatting html frame_matrix html is.tibble html is_tibble html knit_print.trunc_mat html lst html name-repair-superseded html name-repair html new_tibble html reexports html rownames html subsetting html tbl_df-class html tibble-package html tibble html tribble html trunc_mat html view html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) Making 'packages.html' ... done * installing *source* package 'covr' ... ** package 'covr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-covr/00new/covr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'covr' finding HTML links ... done azure html clear_counters html code_coverage html codecov html count html coverage_to_list html coveralls html covr-package html display_name html environment_coverage html exclusions html file_coverage html file_report html function_coverage html gitlab html in_covr html key html new_counter html Rd warning: /tmp/RtmpJBFNNI/R.INSTALL76893b11ebc1/covr/man/new_counter.Rd:10: file link 'srcref' in package 'base' does not exist and so has been treated as a topic package_coverage html percent_coverage html print.coverage html report html system_check html system_output html tally_coverage html to_cobertura html to_sonarqube html trace_calls html value html zero_coverage html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (covr) Making 'packages.html' ... done * installing *source* package 'Rchoice' ... ** package 'Rchoice' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rchoice' finding HTML links ... done AIC.Rchoice html Articles html Attitudes html Health html Rchoice html Workmroz html bread.Rchoice html effect.Rchoice html estfun.Rchoice html getSummary.Rchoice html plot.Rchoice html rFormula html vcov.Rchoice html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rchoice) Making 'packages.html' ... done ERROR: dependency 'sf' is not available for package 'spdep' * removing '/opt/R/4.0.3/lib/R/library/spdep' * installing *source* package 'tseries' ... ** package 'tseries' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arma.c -o arma.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bdstest.c -o bdstest.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c boot.c -o boot.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cfuncs.f90 -o cfuncs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsumsl.f -o dsumsl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c formats.c -o formats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c garch.c -o garch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ppsum.c -o ppsum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tsutils.c -o tsutils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tseries.so arma.o bdstest.o boot.o cfuncs.o dsumsl.o formats.o garch.o init.o ppsum.o tsutils.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tseries/00new/tseries/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tseries' finding HTML links ... done NelPlo html USeconomic html adf.test html arma-methods html arma html bds.test html bev html camp html garch-methods html garch html get.hist.quote html ice.river html irts-functions html irts-methods html irts html jarque.bera.test html kpss.test html maxdrawdown html na.remove html nino html plotOHLC html po.test html portfolio.optim html pp.test html quadmap html read.matrix html read.ts html runs.test html seqplot.ts html sharpe html sterling html summary.arma html summary.garch html surrogate html tcm html tcmd html terasvirta.test html tsbootstrap html white.test html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tseries) Making 'packages.html' ... done * installing *source* package 'forcats' ... ** package 'forcats' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'forcats' finding HTML links ... done as_factor html fct_anon html fct_c html fct_collapse html fct_count html fct_cross html fct_drop html fct_expand html fct_explicit_na html fct_inorder html fct_lump html fct_match html fct_other html fct_recode html fct_relabel html fct_relevel html fct_reorder html fct_rev html fct_shift html fct_shuffle html fct_unify html fct_unique html forcats-package html gss_cat html lvls html lvls_union html pipe html Rd warning: /tmp/RtmpVUXYL9/R.INSTALL7843776c9168/forcats/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forcats) Making 'packages.html' ... done * installing *source* package 'readr' ... ** package 'readr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Collector.cpp -o Collector.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c CollectorGuess.cpp -o CollectorGuess.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Iconv.cpp -o Iconv.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c LocaleInfo.cpp -o LocaleInfo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Reader.cpp -o Reader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Source.cpp -o Source.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Tokenizer.cpp -o Tokenizer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerDelim.cpp -o TokenizerDelim.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerFwf.cpp -o TokenizerFwf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerWs.cpp -o TokenizerWs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c connection.cpp -o connection.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c datetime.cpp -o datetime.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c grisu3.c -o grisu3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c localtime.c -o localtime.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c parse.cpp -o parse.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c read.cpp -o read.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_convert.cpp -o type_convert.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write.cpp -o write.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write_connection.cpp -o write_connection.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write_delim.cpp -o write_delim.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o cpp11.o datetime.o grisu3.o init.o localtime.o parse.o read.o type_convert.o write.o write_connection.o write_delim.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-readr/00new/readr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'readr' finding HTML links ... done Tokenizers html as.col_spec html callback html Rd warning: /tmp/Rtmp4KoU2M/R.INSTALL78b55cd94da0/readr/man/callback.Rd:132: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp4KoU2M/R.INSTALL78b55cd94da0/readr/man/callback.Rd:197: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp4KoU2M/R.INSTALL78b55cd94da0/readr/man/callback.Rd:271: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp4KoU2M/R.INSTALL78b55cd94da0/readr/man/callback.Rd:345: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic clipboard html col_skip html cols html count_fields html datasource html date_names html encoding html format_delim html locale html melt_delim html finding level-2 HTML links ... done melt_delim_chunked html melt_fwf html melt_table html output_column html parse_atomic html parse_datetime html parse_factor html parse_guess html parse_number html parse_vector html problems html read_builtin html read_delim html read_delim_chunked html read_file html read_fwf html read_lines html read_lines_chunked html read_log html read_rds html read_table html readr-package html readr_example html show_progress html spec html spec_delim html tokenize html type_convert html write_delim html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readr) Making 'packages.html' ... done * installing *source* package 'cellranger' ... ** package 'cellranger' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellranger' finding HTML links ... done A1_to_R1C1 html R1C1_to_A1 html addr_col html addr_row html anchored html as.cell_addr html as.ra_ref html as.range html cell_addr html cell_cols html cell_limits html cell_rows html cellranger html guess_fo html is_A1 html letter-num-conversion html print.ra_ref html ra_ref html to_string html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cellranger) Making 'packages.html' ... done * installing *source* package 'rematch2' ... ** package 'rematch2' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rematch2' finding HTML links ... done bind_re_match html Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/bind_re_match.Rd:30: file link 'magrittr' in package 'magrittr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/bind_re_match.Rd:39: file link 'repair_names' in package 'tibble' does not exist and so has been treated as a topic re_exec html Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec.Rd:25: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec.Rd:25: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec.Rd:89: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic re_exec_all html Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec_all.Rd:19: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec_all.Rd:19: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_exec_all.Rd:81: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic re_match html Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match.Rd:27: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match.Rd:18: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match.Rd:35: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic re_match_all html Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match_all.Rd:28: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match_all.Rd:19: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match_all.Rd:19: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match_all.Rd:34: file link 'regexpr' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpuo29Q9/R.INSTALL79ea3048cfc3/rematch2/man/re_match_all.Rd:35: file link 'gregexpr' in package 'base' does not exist and so has been treated as a topic rematch2-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rematch2) Making 'packages.html' ... done * installing *source* package 'dplyr' ... ** package 'dplyr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dplyr' finding HTML links ... done across html add_rownames html all_equal html all_vars html arrange html arrange_all html auto_copy html backend_dbplyr html band_members html bench_compare html between html bind html c_across html case_when html check_dbplyr html coalesce html combine html common_by html compute html context html copy_to html count html cumall html defunct html desc html dim_desc html distinct html distinct_all html do html dplyr-package html dplyr_data_masking html dplyr_extending html dplyr_tidy_select html explain html filter-joins html filter html filter_all html funs html group_by html group_by_all html group_by_drop_default html group_by_prepare html group_cols html group_data html group_map html group_nest html group_split html group_trim html grouped_df html ident html if_else html lead-lag html location html make_tbl html mutate-joins html mutate html mutate_all html n_distinct html na_if html near html nest_by html nest_join html new_grouped_df html nth html order_by html progress_estimated html pull html ranking html recode html reexports html Rd warning: /tmp/Rtmprro2oO/R.INSTALL7a5c314bc9/dplyr/man/reexports.Rd:49: file link 'glimpse' in package 'tibble' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmprro2oO/R.INSTALL7a5c314bc9/dplyr/man/reexports.Rd:49: file link 'tbl_sum' in package 'tibble' does not exist and so has been treated as a topic relocate html rename html rows html rowwise html same_src html sample_n html scoped html se-deprecated html select html select_all html select_vars html setops html slice html sql html src html src_dbi html src_local html src_tbls html starwars html storms html summarise html summarise_all html summarise_each html tbl html tbl_df html tbl_ptype html tbl_vars html tidyeval-compat html top_n html vars html with_groups html with_order html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) Making 'packages.html' ... done * installing *source* package 'ggplot2' ... ** package 'ggplot2' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ggplot2' finding HTML links ... done absoluteGrob html add_theme html aes html aes_ html aes_all html aes_auto html aes_colour_fill_alpha html aes_eval html aes_group_order html aes_linetype_size_shape html aes_position html annotate html annotation_custom html annotation_logticks html annotation_map html annotation_raster html as.list.ggproto html as_labeller html autolayer html autoplot html benchplot html bidirection html binned_scale html borders html calc_element html combine_vars html continuous_scale html coord_cartesian html coord_fixed html coord_flip html coord_map html coord_munch html coord_polar html coord_trans html cut_interval html diamonds html discrete_scale html draw_key html economics html element html element_grob html element_render html expand_limits html expansion html facet_grid html facet_null html facet_wrap html faithfuld html find_panel html fortify-multcomp html fortify html fortify.lm html fortify.map html fortify.sp html geom_abline html geom_bar html geom_bin2d html geom_blank html geom_boxplot html geom_contour html geom_count html geom_density html geom_density_2d html geom_dotplot html geom_errorbarh html geom_function html geom_hex html geom_histogram html geom_jitter html geom_linerange html geom_map html geom_path html geom_point html geom_polygon html geom_qq html geom_quantile html geom_ribbon html geom_rug html geom_segment html geom_smooth html geom_spoke html geom_text html geom_tile html geom_violin html gg-add html gg_dep html ggplot html ggplot2-ggproto html finding level-2 HTML links ... done ggplot2-package html ggplotGrob html ggplot_add html ggplot_build html ggplot_gtable html ggproto html ggsave html ggsf html ggtheme html graphical-units html guide-exts html guide_axis html guide_bins html guide_colourbar html guide_coloursteps html guide_legend html guide_none html guides html hmisc html is.Coord html is.facet html is.ggplot html is.rel html is.theme html label_bquote html labeller html labellers html labs html last_plot html layer html layer_sf html limits html lims html luv_colours html map_data html max_height html mean_se html merge_element html midwest html mpg html msleep html position_dodge html position_identity html position_jitter html position_jitterdodge html position_nudge html position_stack html presidential html print.ggplot html print.ggproto html qplot html reexports html register_theme_elements html remove_missing html render_axes html render_strips html resolution html scale_alpha html scale_binned html scale_brewer html scale_colour_continuous html scale_colour_discrete html scale_continuous html scale_date html scale_discrete html scale_gradient html scale_grey html scale_hue html scale_identity html scale_linetype html scale_manual html scale_shape html scale_size html scale_steps html scale_type html scale_viridis html seals html sec_axis html set_last_plot html should_stop html standardise_aes_names html stat_ecdf html stat_ellipse html stat_identity html stat_sf_coordinates html stat_summary html stat_summary_2d html stat_unique html summarise_plot html summary.ggplot html theme html theme_get html tidyeval html transform_position html translate_qplot_ggplot html translate_qplot_lattice html txhousing html update_defaults html update_labels html vars html waiver html wrap_dims html zeroGrob html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) Making 'packages.html' ... done * installing *source* package 'network' ... ** package 'network' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c access.c -o access.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c constructors.c -o constructors.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c layout.c -o layout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o network.so Rinit.o access.o constructors.o layout.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-network/00new/network/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'network' finding HTML links ... done add.edges html add.vertices html as.color html as.edgelist html finding level-2 HTML links ... done as.matrix.network html as.network.matrix html as.sociomatrix html attribute.methods html deletion.methods html edgeset.constructors html emon html flo html get.edges html get.inducedSubgraph html get.neighborhood html has.edges html is.adjacent html loading.attributes html network-internal html network-operators html network-package html network html network.arrow html network.density html network.dyadcount html network.edgecount html network.edgelabel html network.extraction html network.indicators html network.initialize html network.layout html network.loop html network.naedgecount html network.size html network.vertex html permute.vertexIDs html plot.network html preparePlotArgs html prod.network html read.paj html sum.network html valid.eids html which.matrix.type html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (network) Making 'packages.html' ... done ERROR: dependency 'spdep' is not available for package 'spatialreg' * removing '/opt/R/4.0.3/lib/R/library/spatialreg' * installing *source* package 'haven' ... ** package 'haven' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c tagged_na.c -o tagged_na.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_parser.c -o readstat/readstat_parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_bits.c -o readstat/readstat_bits.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_metadata.c -o readstat/readstat_metadata.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_io_unistd.c -o readstat/readstat_io_unistd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_variable.c -o readstat/readstat_variable.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_writer.c -o readstat/readstat_writer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_error.c -o readstat/readstat_error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_convert.c -o readstat/readstat_convert.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/CKHashTable.c -o readstat/CKHashTable.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_malloc.c -o readstat/readstat_malloc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/readstat_value.c -o readstat/readstat_value.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_write.c -o readstat/sas/readstat_xport_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_read.c -o readstat/sas/readstat_sas7bcat_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_write.c -o readstat/sas/readstat_sas7bdat_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bcat_write.c -o readstat/sas/readstat_sas7bcat_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/ieee.c -o readstat/sas/ieee.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport_read.c -o readstat/sas/readstat_xport_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas.c -o readstat/sas/readstat_sas.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas_rle.c -o readstat/sas/readstat_sas_rle.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_xport.c -o readstat/sas/readstat_xport.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/sas/readstat_sas7bdat_read.c -o readstat/sas/readstat_sas7bdat_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_compress.c -o readstat/spss/readstat_sav_compress.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_spss_parse.c -o readstat/spss/readstat_spss_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_read.c -o readstat/spss/readstat_sav_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_read.c -o readstat/spss/readstat_por_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav.c -o readstat/spss/readstat_sav.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_parse_timestamp.c -o readstat/spss/readstat_sav_parse_timestamp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_read.c -o readstat/spss/readstat_zsav_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_write.c -o readstat/spss/readstat_sav_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_write.c -o readstat/spss/readstat_por_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_spss.c -o readstat/spss/readstat_spss.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por.c -o readstat/spss/readstat_por.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_zsav_write.c -o readstat/spss/readstat_zsav_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_sav_parse.c -o readstat/spss/readstat_sav_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/spss/readstat_por_parse.c -o readstat/spss/readstat_por_parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_read.c -o readstat/stata/readstat_dta_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta.c -o readstat/stata/readstat_dta.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_parse_timestamp.c -o readstat/stata/readstat_dta_parse_timestamp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c readstat/stata/readstat_dta_write.c -o readstat/stata/readstat_dta_write.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c DfReader.cpp -o DfReader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c DfWriter.cpp -o DfWriter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -c haven_types.cpp -o haven_types.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o haven.so tagged_na.o readstat/readstat_parser.o readstat/readstat_bits.o readstat/readstat_metadata.o readstat/readstat_io_unistd.o readstat/readstat_variable.o readstat/readstat_writer.o readstat/readstat_error.o readstat/readstat_convert.o readstat/CKHashTable.o readstat/readstat_malloc.o readstat/readstat_value.o readstat/sas/readstat_xport_write.o readstat/sas/readstat_sas7bcat_read.o readstat/sas/readstat_sas7bdat_write.o readstat/sas/readstat_sas7bcat_write.o readstat/sas/ieee.o readstat/sas/readstat_xport_read.o readstat/sas/readstat_sas.o readstat/sas/readstat_sas_rle.o readstat/sas/readstat_xport.o readstat/sas/readstat_sas7bdat_read.o readstat/spss/readstat_sav_compress.o readstat/spss/readstat_spss_parse.o readstat/spss/readstat_sav_read.o readstat/spss/readstat_por_read.o readstat/spss/readstat_sav.o readstat/spss/readstat_zsav_compress.o readstat/spss/readstat_sav_parse_timestamp.o readstat/spss/readstat_zsav_read.o readstat/spss/readstat_sav_write.o readstat/spss/readstat_por_write.o readstat/spss/readstat_spss.o readstat/spss/readstat_por.o readstat/spss/readstat_zsav_write.o readstat/spss/readstat_sav_parse.o readstat/spss/readstat_por_parse.o readstat/stata/readstat_dta_read.o readstat/stata/readstat_dta.o readstat/stata/readstat_dta_parse_timestamp.o readstat/stata/readstat_dta_write.o DfReader.o cpp11.o DfWriter.o haven_types.o -lz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-haven/00new/haven/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'haven' finding HTML links ... done as_factor html haven-package html labelled html labelled_spss html print_labels html read_dta html read_sas html read_spss html read_xpt html tagged_na html vec_arith.haven_labelled html zap_empty html zap_formats html zap_label html zap_labels html zap_missing html zap_widths html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (haven) Making 'packages.html' ... done * installing *source* package 'readxl' ... ** package 'readxl' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsWorkBook.cpp -o XlsWorkBook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsWorkSheet.cpp -o XlsWorkSheet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsxWorkBook.cpp -o XlsxWorkBook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsxWorkSheet.cpp -o XlsxWorkSheet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cran.c -o cran.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c endian.c -o endian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ole.c -o ole.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xls.c -o xls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xlstool.c -o xlstool.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c zip.cpp -o zip.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o readxl.so RcppExports.o XlsWorkBook.o XlsWorkSheet.o XlsxWorkBook.o XlsxWorkSheet.o cran.o endian.o ole.o xls.o xlstool.o zip.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-readxl/00new/readxl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'readxl' finding HTML links ... done cell-specification html finding level-2 HTML links ... done excel_format html excel_sheets html read_excel html readxl-package html readxl_example html readxl_progress html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readxl) Making 'packages.html' ... done * installing *source* package 'sna' ... ** package 'sna' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cohesion.c -o cohesion.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c components.c -o components.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c geodist.c -o geodist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gli.c -o gli.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c layout.c -o layout.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c likelihood.c -o likelihood.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nli.c -o nli.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c paths.c -o paths.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c randomgraph.c -o randomgraph.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c triads.c -o triads.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sna.so Rinit.o cohesion.o components.o geodist.o gli.o layout.o likelihood.o nli.o paths.o randomgraph.o triads.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sna/00new/sna/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sna' finding HTML links ... done add.isolates html bbnam html bbnam.bf html betweenness html bicomponent.dist html blockmodel html blockmodel.expand html bn html bonpow html brokerage html centralgraph html centralization html clique.census html closeness html coleman html component.dist html component.size.byvertex html components html connectedness html consensus html cug.test html cugtest html cutpoints html degree html diag.remove html dyad.census html efficiency html ego.extract html equiv.clust html eval.edgeperturbation html evcent html event2dichot html flowbet html gapply html gclust.boxstats html gclust.centralgraph html gcor html gcov html gden html gdist.plotdiff html gdist.plotstats html geodist html gilschmidt html gliop html gplot html gplot.arrow html gplot.layout html gplot.loop html gplot.target html gplot.vertex html gplot3d html gplot3d.arrow html gplot3d.layout html gplot3d.loop html graphcent html grecip html gscor html gscov html gt html gtrans html gvectorize html hdist html hierarchy html infocent html interval.graph html is.connected html is.isolate html isolates html kcores html lab.optimize html lnam html loadcent html lower.tri.remove html lubness html make.stochastic html maxflow html mutuality html nacf html neighborhood html netcancor html netlm html netlogit html npostpred html nties html numperm html path.census html plot.bbnam html plot.blockmodel html plot.cugtest html plot.equiv.clust html plot.lnam html plot.qaptest html plot.sociomatrix html potscalered.mcmc html prestige html print.bayes.factor html print.bbnam html print.blockmodel html print.cugtest html print.lnam html print.netcancor html print.netlm html print.netlogit html print.qaptest html print.summary.bayes.factor html print.summary.bbnam html print.summary.blockmodel html print.summary.cugtest html print.summary.lnam html print.summary.netcancor html print.summary.netlm html print.summary.netlogit html print.summary.qaptest html pstar html qaptest html reachability html read.dot html read.nos html redist html rgbn html rgnm html rgnmix html rgraph html rguman html rgws html rmperm html rperm html sdmat html sedist html simmelian html sna-coercion html sna-defunct html sna-deprecated html sna-internal html sna html sna.operators html sr2css html stackcount html stresscent html structdist html structure.statistics html summary.bayes.factor html summary.bbnam html summary.blockmodel html summary.cugtest html summary.lnam html summary.netcancor html summary.netlm html summary.netlogit html summary.qaptest html symmetrize html triad.census html triad.classify html upper.tri.remove html write.dl html write.nos html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sna) Making 'packages.html' ... done * installing *source* package 'viridis' ... ** package 'viridis' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'viridis' finding HTML links ... done reexports html scale_viridis html Rd warning: /tmp/RtmpueFJt8/R.INSTALL7e6878fb7f02/viridis/man/scale_viridis.Rd:73: file link 'ggplot2' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpueFJt8/R.INSTALL7e6878fb7f02/viridis/man/scale_viridis.Rd:76: file link 'scale_fill_gradientn' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpueFJt8/R.INSTALL7e6878fb7f02/viridis/man/scale_viridis.Rd:77: file link 'scale_color_gradientn' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpueFJt8/R.INSTALL7e6878fb7f02/viridis/man/scale_viridis.Rd:41: file link 'scale_fill_gradientn' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpueFJt8/R.INSTALL7e6878fb7f02/viridis/man/scale_viridis.Rd:42: file link 'scale_color_gradientn' in package 'ggplot2' does not exist and so has been treated as a topic viridis_pal html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridis) Making 'packages.html' ... done * installing *source* package 'dfidx' ... ** package 'dfidx' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dfidx' finding HTML links ... done dfidx html dplyr html idx html idx_name html methods.dfidx html model.frame.dfidx html reexports html unfold_idx html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dfidx) Making 'packages.html' ... done * installing *source* package 'waldo' ... ** package 'waldo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'waldo' finding HTML links ... done compare html compare_proxy html waldo-package html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) Making 'packages.html' ... done * installing *source* package 'tidyr' ... ** package 'tidyr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tidyr/00new/tidyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tidyr' finding HTML links ... done billboard html chop html complete html construction html deprecated-se html drop_na html expand html expand_grid html extract html extract_numeric html fill html fish_encounters html full_seq html gather html hoist html nest html nest_legacy html pack html pipe html Rd warning: /tmp/Rtmp928FjY/R.INSTALL7fbe3b62a021/tidyr/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic pivot_longer html pivot_longer_spec html pivot_wider html pivot_wider_spec html reexports html relig_income html replace_na html separate html separate_rows html smiths html spread html table1 html tidyr-package html tidyr_legacy html tidyr_tidy_select html uncount html unite html us_rent_income html who html world_bank_pop html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyr) Making 'packages.html' ... done * installing *source* package 'ergm' ... ** package 'ergm' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c CD.c -o CD.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MCMC.c -o MCMC.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MHproposal.c -o MHproposal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MHproposals.c -o MHproposals.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MHproposals_bipartite.c -o MHproposals_bipartite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MHproposals_block.c -o MHproposals_block.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MHproposals_degree.c -o MHproposals_degree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c MPLE.c -o MPLE.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c SAN.c -o SAN.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c allstatistics.c -o allstatistics.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestat.c -o changestat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats.c -o changestats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_coincidence.c -o changestats_coincidence.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_concurrentties.c -o changestats_concurrentties.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_dgw_sp.c -o changestats_dgw_sp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_experimental.c -o changestats_experimental.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_homoproportion.c -o changestats_homoproportion.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_indices.c -o changestats_indices.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_internal.c -o changestats_internal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_test.c -o changestats_test.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c changestats_transitiveties.c -o changestats_transitiveties.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c edgelist.c -o edgelist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c edgetree.c -o edgetree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c ergm_rlebdm.c -o ergm_rlebdm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c geodist.c -o geodist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c godfather.c -o godfather.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c model.c -o model.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c netstats.c -o netstats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtCD.c -o wtCD.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtMCMC.c -o wtMCMC.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtMHproposal.c -o wtMHproposal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtMHproposals.c -o wtMHproposals.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtSAN.c -o wtSAN.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtchangestats.c -o wtchangestats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtedgetree.c -o wtedgetree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtgodfather.c -o wtgodfather.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtmodel.c -o wtmodel.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c wtnetstats.c -o wtnetstats.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ergm.so CD.o MCMC.o MHproposal.o MHproposals.o MHproposals_bipartite.o MHproposals_block.o MHproposals_degree.o MPLE.o SAN.o allstatistics.o changestat.o changestats.o changestats_coincidence.o changestats_concurrentties.o changestats_dgw_sp.o changestats_experimental.o changestats_homoproportion.o changestats_indices.o changestats_internal.o changestats_test.o changestats_transitiveties.o edgelist.o edgetree.o ergm_rlebdm.o geodist.o godfather.o init.o model.o netstats.o wtCD.o wtMCMC.o wtMHproposal.o wtMHproposals.o wtSAN.o wtchangestats.o wtedgetree.o wtgodfather.o wtmodel.o wtnetstats.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ergm/00new/ergm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ergm' finding HTML links ... done Getting.Started html anova.ergm html approx.hotelling.diff.test html finding level-2 HTML links ... done as.network.numeric html as.rlebdm.ergm html as.rlebdm.ergm_conlist html check.ErgmTerm html control.ergm html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/control.ergm.Rd:552: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic control.ergm.bridge html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/control.ergm.bridge.Rd:69: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic control.ergm.godfather html control.gof html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/control.gof.Rd:83: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic control.logLik.ergm html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/control.logLik.ergm.Rd:73: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic control.san html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/control.san.Rd:85: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic control.simulate.ergm html degreedist html ecoli html edges html enformulate.curved html ergm-constraints html ergm-defunct html ergm-deprecated html ergm-errors html ergm-internal html ergm-package html ergm-parallel html ergm-proposals html ergm-references html ergm-terms html ergm html ergm.allstats html ergm.bounddeg html ergm.bridge.llr html ergm.estfun html ergm.eta html ergm.exact html ergm.geodistdist html ergm.getnetwork html ergm.godfather html ergm.mple html ergmMPLE html ergm_Clist html ergm_MCMC_sample html ergm_model html ergm_plot.mcmc.list html ergm_proposal html ergm_proposal_table html eut-upgrade html faux.desert.high html faux.dixon.high html faux.magnolia.high html faux.mesa.high html fix.curved html florentine html g4 html get.node.attr html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/get.node.attr.Rd:40: file link 'get.vertex.attribute' in package 'network' does not exist and so has been treated as a topic geweke.diag.mv html gof html hamming html is.curved html is.durational html is.dyad.independent html is.inCH html kapferer html lasttoggle html logLik.ergm html logLikNull html mcmc.diagnostics html molecule html network.list html nodal_attributes-API html nodal_attributes html nparam html nvattr.copy.network html param_names html pending_update_network html predict.formula html rlebdm html samplk html sampson html san html search.ergmTerms html simulate.ergm html Rd warning: /tmp/RtmpEEHXJA/R.INSTALL17756e90517/ergm/man/simulate.ergm.Rd:117: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic simulate.formula html spectrum0.mvar html summary.ergm html summary.ergm_model html summary.formula html summary_formula html to_ergm_Cdouble html update.network html wtd.median html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ergm) Making 'packages.html' ... done * installing *source* package 'joineRML' ... ** package 'joineRML' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c expW.cpp -o expW.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c lambdaUpdate.cpp -o lambdaUpdate.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c mvnorm.cpp -o mvnorm.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o joineRML.so RcppExports.o expW.o gammaUpdate.o gammaUpdate_approx.o init.o lambdaUpdate.o mvnorm.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-joineRML/00new/joineRML/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'joineRML' finding HTML links ... done baseHaz html bootSE html Rd warning: /tmp/RtmpV5m0zl/R.INSTALL28a2ad32af6/joineRML/man/bootSE.Rd:129: file link 'tryCatch' in package 'base' does not exist and so has been treated as a topic confint.mjoint html dynLong html dynSurv html epileptic.qol html fitted.mjoint html fixef.mjoint html Rd warning: /tmp/RtmpV5m0zl/R.INSTALL28a2ad32af6/joineRML/man/fixef.mjoint.Rd:74: file link 'fixef' in package 'nlme' does not exist and so has been treated as a topic formula.mjoint html getVarCov.mjoint html heart.valve html joineRML html logLik.mjoint html mjoint html mjoint.object html mjoint_tidiers html pbc2 html plot.dynLong html plot.dynSurv html plot.mjoint html plot.ranef.mjoint html plotConvergence html ranef.mjoint html Rd warning: /tmp/RtmpV5m0zl/R.INSTALL28a2ad32af6/joineRML/man/ranef.mjoint.Rd:56: file link 'ranef' in package 'nlme' does not exist and so has been treated as a topic reexports html renal html residuals.mjoint html sampleData html sigma.mjoint html simData html summary.mjoint html vcov.mjoint html Rd warning: /tmp/RtmpV5m0zl/R.INSTALL28a2ad32af6/joineRML/man/vcov.mjoint.Rd:86: file link 'cov2cor' in package 'stats' does not exist and so has been treated as a topic *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (joineRML) Making 'packages.html' ... done * installing *source* package 'Lahman' ... ** package 'Lahman' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Lahman' finding HTML links ... done AllstarFull html Appearances html AwardsManagers html AwardsPlayers html AwardsShareManagers html AwardsSharePlayers html Batting html BattingPost html CollegePlaying html Fielding html FieldingOF html FieldingOFsplit html FieldingPost html HallOfFame html HomeGames html Label html Lahman-package html LahmanData html Managers html ManagersHalf html Master html Parks html People html Pitching html PitchingPost html Salaries html Schools html SeriesPost html Teams html TeamsFranchises html TeamsHalf html battingLabels html battingStats html playerInfo html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Lahman) Making 'packages.html' ... done * installing *source* package 'xergm.common' ... ** package 'xergm.common' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xergm.common' finding HTML links ... done adjust html alliances html checkdegeneracy html chemnet html getformula html gof html handleMissings html interpret html is.mat.onemode html knecht html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xergm.common) Making 'packages.html' ... done * installing *source* package 'rio' ... ** package 'rio' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rio' finding HTML links ... done arg_reconcile html characterize html convert html export html Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:35: file link 'write_sas' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:36: file link 'write_xpt' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:37: file link 'write_sav' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:38: file link 'write_sav' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:39: file link 'write_dta' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:43: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:52: file link 'toJSON' in package 'jsonlite' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:55: file link 'xml_add_child' in package 'xml2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/export.Rd:56: file link 'xml_add_child' in package 'xml2' does not exist and so has been treated as a topic export_list html extensions html gather_attrs html get_ext html import html Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:37: file link 'read_sav' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:38: file link 'read_sav' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:40: file link 'read_por' in package 'haven' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:42: file link 'dget' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:52: file link 'fwf_empty' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:52: file link 'fwf_widths' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:52: file link 'fwf_positions' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbCFh99/R.INSTALL407cc7f91d/rio/man/import.Rd:62: file link 'read_html' in package 'xml2' does not exist and so has been treated as a topic import_list html install_formats html is_file_text html rio html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rio) Making 'packages.html' ... done * installing *source* package 'recipes' ... ** package 'recipes' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'recipes' finding HTML links ... done add_step html bake html finding level-2 HTML links ... done check_class html check_cols html check_missing html check_name html check_new_values html check_range html check_type html detect_step html discretize html fixed html format_ch_vec html formula.recipe html fully_trained html get_keep_original_cols html has_role html juice html names0 html prep html prepper html print.recipe html rand_id html recipe html recipes-internal html recipes html recipes_pkg_check html reexports html required_pkgs.step html roles html selections html step html step_BoxCox html step_YeoJohnson html step_arrange html step_bin2factor html step_bs html step_center html step_classdist html step_corr html step_count html step_cut html step_date html step_depth html step_discretize html step_downsample html step_dummy html step_factor2string html step_filter html step_geodist html step_holiday html step_hyperbolic html step_ica html step_impute_bag html step_impute_knn html step_impute_linear html step_impute_lower html step_impute_mean html step_impute_median html step_impute_mode html step_impute_roll html step_indicate_na html step_integer html step_interact html step_intercept html step_inverse html step_invlogit html step_isomap html step_kpca html step_kpca_poly html step_kpca_rbf html step_lag html step_lincomb html step_log html step_logit html step_mutate html step_mutate_at html step_naomit html step_nnmf html step_normalize html step_novel html step_ns html step_num2factor html step_nzv html step_ordinalscore html step_other html step_pca html step_pls html step_poly html step_profile html step_range html step_ratio html step_regex html step_relevel html step_relu html step_rename html step_rename_at html step_rm html step_sample html step_scale html step_select html step_shuffle html step_slice html step_spatialsign html step_sqrt html step_string2factor html step_unknown html step_unorder html step_upsample html step_window html step_zv html summary.recipe html terms_select html tidy.recipe html tunable.recipe html update.step html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (recipes) Making 'packages.html' ... done * installing *source* package 'Hmisc' ... ** package 'Hmisc' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Hmisc.c -o Hmisc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cidxcn.f -o cidxcn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cidxcp.f -o cidxcp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c hoeffd.f -o hoeffd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c jacklins.f -o jacklins.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c largrec.f -o largrec.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mChoice.c -o mChoice.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c maxempr.f -o maxempr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nstr.c -o nstr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ranksort.c -o ranksort.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rcorr.f -o rcorr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c string_box.c -o string_box.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c wclosest.f -o wclosest.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Hmisc/00new/Hmisc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Hmisc' finding HTML links ... done Cs html Ecdf html GiniMd html Hmisc-internal html Lag html Merge html Misc html Overview html Save html abs.error.pred html addMarginal html all.is.numeric html approxExtrap html areg html aregImpute html biVar html binconf html bootkm html bpower html bpplot html bystats html capitalize html ciapower html cnvrt.coords html combplotp html consolidate html contents html cpower html csv.get html curveRep html cut2 html data.frame.create.modify.check html dataRep html deff html describe html discrete html dotchart2 html dotchart3 html dotchartpl html epi html equalBins html errbar html escapeRegex html estSeqMarkovOrd html estSeqSim html event.chart html event.convert html event.history html find.matches html first.word html format.df html format.pval html gbayes html gbayesSeqSim html getHdata html getRs html getZip html ggMisc html ggfreqScatter html hdquantile html hidingTOC html hist.data.frame html histbackback html histboxp html hoeffd html html html impute html intMarkovOrd html knitrSet html labcurve html label html latex html latexCheckOptions html latexDotchart html latexTabular html latexTherm html legendfunctions html list.tree html mApply html mChoice html makeNstr html mdb.get html mgp.axis html minor.tick html mtitle html multLines html na.delete html na.detail.response html na.keep html nin html nobsY html nstr html num.intercepts html pairUpDiff html panel.bpplot html partition html pc1 html plotCorrPrecision html plotlyM html plsmo html popower html finding level-2 HTML links ... done Rd warning: /tmp/RtmptYxuA5/R.INSTALL4f4515e2688/Hmisc/man/popower.Rd:136: file link 'scale_fill_brewer' in package 'ggplot2' does not exist and so has been treated as a topic print.char.list html print.char.matrix html prnz html prselect html pstamp html rMultinom html rcorr html rcorr.cens html rcorrp.cens html rcspline.eval html rcspline.plot html Rd warning: /tmp/RtmptYxuA5/R.INSTALL4f4515e2688/Hmisc/man/rcspline.plot.Rd:131: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic rcspline.restate html reShape html redun html rlegend html rm.boot html samplesize.bin html sasxport.get html scat1d html score.binary html sedit html show.pch html showPsfrag html simMarkovOrd html simRegOrd html simplifyDims html smean.sd html solvet html somers2 html soprobMarkovOrd html spower html spss.get html src html stat_plsmo html stata.get html string.bounding.box html string.break.line html stringDims html subplot html summarize html summary.formula html summaryM html summaryP html summaryRc html summaryS html Rd warning: /tmp/RtmptYxuA5/R.INSTALL4f4515e2688/Hmisc/man/summaryS.Rd:24: file link 'dotplot' in package 'lattice' does not exist and so has been treated as a topic symbol.freq html sys html t.test.cluster html tabulr html tex html transace html transcan html Rd warning: /tmp/RtmptYxuA5/R.INSTALL4f4515e2688/Hmisc/man/transcan.Rd:261: file link 'lm.fit' in package 'stats' does not exist and so has been treated as a topic translate html trunc.POSIXt html units html upData html upFirst html valueTags html varclus html wtd.stats html xYplot html xtfrm.labelled html xy.group html yearDays html ynbind html sas.get html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Hmisc) Making 'packages.html' ... done * installing *source* package 'mlogit' ... ** package 'mlogit' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mlogit' finding HTML links ... done Car html Catsup html Cracker html Electricity html Fishing html Game html HC html Heating html JapaneseFDI html Mode html ModeCanada html NOx html RiskyTransport html Train html cor.mlogit html distribution html effects.mlogit html has.intercept html hmftest html logsum html miscmethods.mlogit html mlogit-deprecated html mlogit-package html mlogit html finding level-2 HTML links ... done mlogit.optim html model.matrix.dfidx_mlogit html plot.mlogit html reexports html rpar html scoretest html vcov.mlogit html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlogit) Making 'packages.html' ... done * installing *source* package 'rsample' ... ** package 'rsample' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rsample' finding HTML links ... done add_resample_id html apparent html as.data.frame.rsplit html attrition html bootstraps html complement html drinks html form_pred html gather.rset html get_fingerprint html group_vfold_cv html initial_split html int_pctl html labels.rset html labels.rsplit html loo_cv html make_splits html make_strata html manual_rset html mc_cv html nested_cv html new_rset html permutations html populate html pretty.vfold_cv html reexports html reg_intervals html rolling_origin html rsample-dplyr html rsample html rsample2caret html rset_reconstruct html slide-resampling html tidy.rsplit html two_class_dat html validation_split html vfold_cv html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsample) Making 'packages.html' ... done * installing *source* package 'testthat' ... ** package 'testthat' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'testthat' finding HTML links ... done CheckReporter html DebugReporter html FailReporter html JunitReporter html ListReporter html LocationReporter html MinimalReporter html MultiReporter html ProgressReporter html RStudioReporter html Reporter html SilentReporter html StopReporter html SummaryReporter html TapReporter html TeamcityReporter html auto_test html auto_test_package html capture_condition html capture_output html compare html compare_state html comparison-expectations html context html context_start_file html default_reporter html describe html dir_state html equality-expectations html evaluate_promise html expect html expect_equivalent html expect_error html expect_invisible html expect_is html expect_known_output html expect_length html expect_less_than html expect_match html expect_named html expect_null html expect_output html expect_output_file html expect_reference html expect_setequal html expect_silent html expect_snapshot html expect_snapshot_file html expect_success html expect_that html expect_vector html expectation html fail html find_reporter html find_test_scripts html inheritance-expectations html is_informative_error html is_testing html local_edition html local_snapshotter html local_test_context html local_test_directory html logical-expectations html make_expectation html not html oldskool html quasi_label html reexports html reporter-accessors html run_cpp_tests html safe_digest html skip html snapshot_accept html source_file html takes_less_than html teardown html teardown_env html test_dir html test_env html test_examples html test_file html test_package html test_path html test_that html testthat-package html testthat_examples html testthat_results html try_again html use_catch html verify_output html watch html with_mock html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) Making 'packages.html' ... done * installing *source* package 'broom' ... ** package 'broom' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'broom' finding HTML links ... done augment.Mclust html augment.betamfx html augment.betareg html augment.clm html augment.coxph html augment.decomposed.ts html augment.drc html augment.factanal html augment.felm html augment.fixest html augment.gam html augment.glm html augment.glmRob html augment.htest html augment.ivreg html augment.kmeans html augment.lm html augment.lmRob html augment.loess html augment.mfx html augment.mjoint html augment.mlogit html augment.nlrq html augment.nls html augment.pam html augment.plm html augment.poLCA html augment.polr html augment.prcomp html augment.rlm html augment.rma html augment.robustbase.glmrob html augment.robustbase.lmrob html augment.rq html augment.rqs html augment.sarlm html augment.smooth.spline html augment.speedlm html augment.stl html augment.survreg html augment_columns html bootstrap html broom html confint_tidy html data.frame_tidiers html durbinWatsonTest_tidiers html finish_glance html fix_data_frame html glance.Arima html glance.Mclust html glance.Rchoice html glance.aareg html glance.aov html glance.betamfx html glance.betareg html glance.biglm html glance.binDesign html glance.cch html glance.clm html glance.clmm html glance.coeftest html glance.coxph html glance.crr html glance.cv.glmnet html glance.drc html glance.ergm html glance.factanal html glance.felm html glance.fitdistr html glance.fixest html glance.gam html glance.garch html glance.geeglm html glance.glm html glance.glmRob html glance.glmnet html glance.gmm html glance.ivreg html glance.kmeans html glance.lavaan html glance.lm html glance.lmRob html glance.lmodel2 html glance.margins html glance.mfx html glance.mjoint html glance.mlogit html glance.muhaz html glance.multinom html glance.negbin html glance.nlrq html glance.nls html glance.orcutt html glance.pam html glance.plm html glance.poLCA html glance.polr html glance.pyears html glance.ridgelm html glance.rlm html glance.rma html glance.robustbase.lmrob html glance.rq html glance.sarlm html glance.smooth.spline html glance.speedglm html glance.speedlm html glance.summary.lm html glance.survdiff html glance.survexp html glance.survfit html glance.survreg html glance.svyglm html glance.svyolr html glance.varest html glance_optim html leveneTest_tidiers html list_tidiers html metafor_tidiers html null_tidiers html reexports html sp_tidiers html sparse_tidiers html summary_tidiers html tidy.Arima html tidy.Kendall html tidy.Mclust html tidy.Rchoice html tidy.TukeyHSD html tidy.aareg html tidy.acf html tidy.anova html tidy.aov html tidy.aovlist html tidy.betamfx html tidy.betareg html tidy.biglm html tidy.binDesign html tidy.binWidth html tidy.boot html tidy.btergm html tidy.cch html tidy.cld html tidy.clm html tidy.clmm html tidy.coeftest html tidy.confint.glht html tidy.confusionMatrix html tidy.coxph html tidy.crr html tidy.cv.glmnet html tidy.density html tidy.dist html tidy.drc html tidy.emmGrid html tidy.epi.2by2 html tidy.ergm html tidy.factanal html tidy.felm html tidy.fitdistr html tidy.fixest html tidy.ftable html tidy.gam html tidy.garch html tidy.geeglm html tidy.glht html tidy.glm html tidy.glmRob html tidy.glmnet html tidy.gmm html tidy.htest html tidy.ivreg html tidy.kappa html tidy.kde html tidy.kmeans html tidy.lavaan html tidy.lm html tidy.lm.beta html tidy.lmRob html tidy.lmodel2 html tidy.lsmobj html tidy.manova html tidy.map html tidy.margins html tidy.mediate html tidy.mfx html tidy.mjoint html tidy.mle2 html tidy.mlm html tidy.mlogit html tidy.muhaz html tidy.multinom html tidy.negbin html tidy.nlrq html tidy.nls html tidy.orcutt html tidy.pairwise.htest html tidy.pam html tidy.plm html tidy.poLCA html tidy.polr html tidy.power.htest html tidy.prcomp html tidy.pyears html tidy.rcorr html tidy.ref.grid html tidy.regsubsets html tidy.ridgelm html tidy.rlm html tidy.robustbase.glmrob html tidy.robustbase.lmrob html tidy.roc html tidy.rq html tidy.rqs html tidy.sarlm html tidy.spec html tidy.speedglm html tidy.speedlm html tidy.summary.glht html tidy.summary.lm html tidy.summary_emm html tidy.survdiff html tidy.survexp html tidy.survfit html tidy.survreg html tidy.svyglm html tidy.svyolr html tidy.systemfit html tidy.table html tidy.ts html tidy.varest html tidy.zoo html tidy_irlba html tidy_optim html tidy_svd html tidy_xyz html vector_tidiers html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (broom) Making 'packages.html' ... done * installing *source* package 'pbkrtest' ... ** package 'pbkrtest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pbkrtest' finding HTML links ... done compute_auxillary html data-beets html data-budworm html devfun_vp html get_Fstat_ddf html get_covbeta html get_ddf_Lb html getkr html internal-pbkrtest html internal html kr-modcomp html finding level-2 HTML links ... done kr-vcov html model-coerce html pb-modcomp html pb-refdist html sat-modcomp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbkrtest) Making 'packages.html' ... done * installing *source* package 'btergm' ... ** package 'btergm' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'btergm' finding HTML links ... done btergm-class html finding level-2 HTML links ... done btergm-package html btergm html checkdegeneracy html edgeprob html getformula html gofmethods html gofplot html gofstatistics html interpret html marginalplot html simulate.btergm html tergm-terms html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (btergm) Making 'packages.html' ... done * installing *source* package 'caret' ... ** package 'caret' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c caret.c -o caret.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o caret.so caret.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-caret/00new/caret/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'caret' finding HTML links ... done BloodBrain html BoxCoxTrans html GermanCredit html Sacramento html as.matrix.confusionMatrix html avNNet html bag html bagEarth html bagFDA html calibration html caret-internal html caretFuncs html caretSBF html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/caretSBF.Rd:47: file link 'summary.Gam' in package 'gam' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/caretSBF.Rd:54: file link 'summary.Gam' in package 'gam' does not exist and so has been treated as a topic cars html classDist html confusionMatrix html confusionMatrix.train html cox2 html createDataPartition html densityplot.rfe html dhfr html diff.resamples html dotPlot html dotplot.diff.resamples html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/dotplot.diff.resamples.Rd:23: file link 'dotplot' in package 'lattice' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/dotplot.diff.resamples.Rd:66: file link 'bwplot' in package 'lattice' does not exist and so has been treated as a topic downSample html dummyVars html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/dummyVars.Rd:83: file link 'contr.treatment' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/dummyVars.Rd:86: file link 'contr.treatment' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/dummyVars.Rd:173: file link 'contr.treatment' in package 'stats' does not exist and so has been treated as a topic featurePlot html filterVarImp html findCorrelation html findLinearCombos html format.bagEarth html gafs.default html gafs_initial html getSamplingInfo html histogram.train html icr.formula html index2vec html knn3 html knnreg html learning_curve_dat html lift html maxDissim html mdrr html modelLookup html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/modelLookup.Rd:26: file link 'grepl' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/modelLookup.Rd:78: file link 'grepl' in package 'base' does not exist and so has been treated as a topic models html nearZeroVar html nullModel html oil html oneSE html panel.lift2 html panel.needle html pcaNNet html plot.gafs html plot.rfe html plot.train html plot.varImp.train html plotClassProbs html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/plotClassProbs.Rd:23: file link 'densityplot' in package 'lattice' does not exist and so has been treated as a topic plotObsVsPred html plsda html postResample html pottery html prcomp.resamples html preProcess html predict.bagEarth html predict.gafs html predict.knn3 html predict.knnreg html predict.train html predictors html print.confusionMatrix html print.train html recall html resampleHist html resampleSummary html resamples html rfe html rfeControl html safs html safsControl html safs_initial html sbf html sbfControl html scat html segmentationData html sensitivity html spatialSign html summary.bagEarth html tecator html thresholder html train html finding level-2 HTML links ... done trainControl html twoClassSim html update.safs html update.train html varImp html varImp.gafs html var_seq html xyplot.resamples html Rd warning: /tmp/Rtmpz0RBFZ/R.INSTALL8694c1ac00b/caret/man/xyplot.resamples.Rd:162: file link 'bwplot' in package 'lattice' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (caret) Making 'packages.html' ... done * installing *source* package 'geepack' ... ** package 'geepack' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c famstr.cc -o famstr.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gee2.cc -o gee2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c geesubs.cc -o geesubs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c inter.cc -o inter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ordgee.cc -o ordgee.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c param.cc -o param.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o geepack.so famstr.o gee2.o geesubs.o init.o inter.o ordgee.o param.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-geepack/00new/geepack/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'geepack' finding HTML links ... done QIC html compCoef html dietox html fixed2Zcor html geeglm html geepack-internal html geese html geese.control html genZcor html koch html muscatine html ohio html ordgee html relRisk html respdis html respiratory html seizure html sitka89 html spruce html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geepack) Making 'packages.html' ... done * installing *source* package 'mediation' ... ** package 'mediation' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mediation' finding HTML links ... done CEDdata html amelidiate html boundsdata html framing html ivmediate html jobs html mediate html mediate.ced html mediate.pd html mediate.ped html mediate.sed html mediate_tsls html mediation html mediations html medsens html multimed html plot.ivmediate html plot.mediate html plot.mediate.mer html plot.mediations html plot.medsens html plot.multimed html school html student html summary.ivmediate html summary.mediate html summary.mediate.design html summary.mediate.mer html summary.mediations html summary.medsens html summary.multimed html test.TMint html test.modmed html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mediation) Making 'packages.html' ... done * installing *source* package 'modeltests' ... ** package 'modeltests' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'modeltests' finding HTML links ... done acceptable_augment_colnames html argument_glossary html augment_data_helper html check_arguments html finding level-2 HTML links ... done check_augment_data_specification html check_augment_function html check_augment_newdata_precedence html check_augment_no_data html check_dims html check_glance_outputs html check_single_augment_output html check_tibble html check_tidy_output html column_glossary html has_rownames html modeltests-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modeltests) Making 'packages.html' ... done * installing *source* package 'car' ... ** package 'car' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'car' finding HTML links ... done Anova html Boot html Boxplot html Contrasts html Ellipses html Export html finding level-2 HTML links ... done Import html Predict html S html ScatterplotSmoothers html Tapply html TransformationAxes html avPlots html bcPower html boxCox html boxCoxVariable html boxTidwell html brief html car-defunct html car-deprecated html car-internal html carHexsticker html carPalette html carWeb html ceresPlots html compareCoefs html crPlots html deltaMethod html densityPlot html dfbetaPlots html durbinWatsonTest html hccm html hist.boot html infIndexPlot html influence-mixed-models html influencePlot html invResPlot html invTranPlot html leveneTest html leveragePlots html linearHypothesis html logit html marginalModelPlot html mcPlots html ncvTest html outlierTest html panel.car html poTest html powerTransform html qqPlot html recode html regLine html residualPlots html scatter3d html scatterplot html scatterplotMatrix html showLabels html sigmaHat html some html spreadLevelPlot html strings2factors html subsets html symbox html testTransform html vif html wcrossprod html which.names html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (car) Making 'packages.html' ... done * installing *source* package 'AER' ... ** package 'AER' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'AER' finding HTML links ... done Affairs html ArgentinaCPI html Baltagi2002 html BankWages html BenderlyZwick html BondYield html CASchools html CPS1985 html CPS1988 html CPSSW html CameronTrivedi1998 html CartelStability html ChinaIncome html CigarettesB html CigarettesSW html CollegeDistance html ConsumerGood html CreditCard html DJFranses html DJIA8012 html DoctorVisits html DutchAdvert html DutchSales html Electricity1955 html Electricity1970 html EquationCitations html Equipment html EuroEnergy html Fatalities html Fertility html Franses1998 html FrozenJuice html GSOEP9402 html GSS7402 html GermanUnemployment html GoldSilver html Greene2003 html GrowthDJ html GrowthSW html Grunfeld html Guns html HMDA html HealthInsurance html HousePrices html Journals html KleinI html Longley html MASchools html MSCISwitzerland html ManufactCosts html MarkDollar html MarkPound html Medicaid1986 html Mortgage html MotorCycles html MotorCycles2 html Municipalities html MurderRates html NMES1988 html NYSESW html NaturalGas html OECDGas html OECDGrowth html OlympicTV html OrangeCounty html PSID1976 html PSID1982 html PSID7682 html Parade2005 html PepperPrice html PhDPublications html ProgramEffectiveness html RecreationDemand html ResumeNames html SIC33 html STAR html ShipAccidents html SmokeBan html SportsCards html StockWatson2007 html StrikeDuration html SwissLabor html TeachingRatings html TechChange html TradeCredit html TravelMode html UKInflation html UKNonDurables html USAirlines html USConsump1950 html USConsump1979 html USConsump1993 html USCrudes html USGasB html USGasG html USInvest html USMacroB html USMacroG html USMacroSW html USMacroSWM html USMacroSWQ html USMoney html USProdIndex html USSeatBelts html USStocksSW html WeakInstrument html WinkelmannBoes2009 html dispersiontest html ivreg html ivreg.fit html Rd warning: /tmp/RtmpdBSPY6/R.INSTALLae5151663ae/AER/man/ivreg.fit.Rd:22: file link 'lm.wfit' in package 'stats' does not exist and so has been treated as a topic summary.ivreg html tobit html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AER) Making 'packages.html' ... done * installing *source* package 'drc' ... ** package 'drc' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'drc' finding HTML links ... done AR html BC html CIcompX html CRS.4a html CRS.5a html ED.drc html EDcomp html EXD html G.aparine html H.virescens html LL.2 html LL.3 html LL.4 html LL.5 html M.bahia html MAX html MM html NEC html O.mykiss html P.promelas html PR html RScompetition html S.alba html S.capricornutum html W2 html W3 html W4 html acidiq html algae html anova.drc html auxins html backfit html barley html baro5 html boxcox.drc html braincousens html bread.drc html cedergreen html chickweed html coef.drc html compParm html comped html confint.drc html daphnids html decontaminants html deguelin html drm html drmc html earthworms html etmotc html finney71 html fitted.drc html fplogistic html gammadr html gaussian html germination html getInitial html getMeanFunctions html glymet html gompertz html gompertzd html hatvalues.drc html heartrate html isobole html lepidium html lettuce html lin.test html llogistic html lnormal html logLik.drc html logistic html maED html mecter html metals html methionine html mixture html modelFit html mr.test html mselect html multi2 html nasturtium html neill.test html noEffect html plot.drc html predict.drc html print.drc html print.summary.drc html rdrm html residuals.drc html ryegrass html searchdrc html secalonic html selenium html simDR html spinach html summary.drc html terbuthylazin html twophase html update.drc html ursa html vcov.drc html vinclozolin html weibull1 html yieldLoss html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drc) Making 'packages.html' ... done * installing *source* package 'systemfit' ... ** package 'systemfit' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'systemfit' finding HTML links ... done GrunfeldGreene html KleinI html Kmenta html bread.systemfit html coef.systemfit html confint.systemfit html correlation.systemfit html createSystemfitModel html estfun.systemfit html fitted.systemfit html formula.systemfit html hausman.systemfit html linear.hypothesis.systemfit html Rd warning: /tmp/RtmpXXhnVj/R.INSTALLbc93c1f67a5/systemfit/man/linear.hypothesis.systemfit.Rd:37: file link 'linearHypothesis.default' in package 'car' does not exist and so has been treated as a topic logLik.systemfit html lrtest.systemfit html model.frame.systemfit html model.matrix.systemfit html nlsystemfit html ppine html predict.systemfit html print.confint.systemfit html print.nlsystemfit.system html print.systemfit html residuals.systemfit html se.ratio.systemfit html summary.nlsystemfit.system html summary.systemfit html systemfit-internal html systemfit html systemfit.control html terms.systemfit html vcov.systemfit html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (systemfit) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'libcoin', 'inum', 'partykit', 'Cubist' * installing *source* package 'libcoin' ... ** package 'libcoin' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/mvtnorm/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libcoin-init.c -o libcoin-init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/mvtnorm/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c libcoin.c -o libcoin.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o libcoin.so libcoin-init.o libcoin.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-libcoin/00new/libcoin/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'libcoin' finding HTML links ... done LinStatExpCov html ctabs html doTest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (libcoin) Making 'packages.html' ... done * installing *source* package 'Cubist' ... ** package 'Cubist' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c construct.c -o construct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c contin.c -o contin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c discr.c -o discr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c formrules.c -o formrules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c formtree.c -o formtree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c getdata.c -o getdata.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c getnames.c -o getnames.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c global.c -o global.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c hash.c -o hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c implicitatt.c -o implicitatt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c instance.c -o instance.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c modelfiles.c -o modelfiles.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c predict.c -o predict.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c prunetree.c -o prunetree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rcubist.c -o rcubist.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c redefine.c -o redefine.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c regress.c -o regress.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rsample.c -o rsample.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rulebasedmodels.c -o rulebasedmodels.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rules.c -o rules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c sample.c -o sample.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c sort.c -o sort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c stats.c -o stats.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c strbuf.c -o strbuf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c top.c -o top.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c trees.c -o trees.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c update.c -o update.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c utility.c -o utility.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c xval.c -o xval.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Cubist.so construct.o contin.o discr.o formrules.o formtree.o getdata.o getnames.o global.o hash.o implicitatt.o instance.o modelfiles.o predict.o prunetree.o rcubist.o redefine.o regress.o rsample.o rulebasedmodels.o rules.o sample.o sort.o stats.o strbuf.o top.o trees.o update.o utility.o xval.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Cubist/00new/Cubist/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Cubist' finding HTML links ... done QuinlanAttributes html cubist.default html cubistControl html dotplot.cubist html exportCubistFiles html predict.cubist html summary.cubist html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Cubist) Making 'packages.html' ... done * installing *source* package 'inum' ... ** package 'inum' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'inum' finding HTML links ... done enum html interval html inum html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inum) Making 'packages.html' ... done * installing *source* package 'partykit' ... ** package 'partykit' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c partykit-init.c -o partykit-init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rfweights.c -o rfweights.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o partykit.so partykit-init.o rfweights.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-partykit/00new/partykit/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'partykit' finding HTML links ... done HuntingSpiders html WeatherPlay html cforest html ctree html ctree_control html Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/ctree_control.Rd:44: file link 'GenzBretz' in package 'mvtnorm' does not exist and so has been treated as a topic extree_data html extree_fit html glmtree html Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/glmtree.Rd:45: file link 'glm.fit' in package 'stats' does not exist and so has been treated as a topic lmtree html Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/lmtree.Rd:41: file link 'lm.fit' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/lmtree.Rd:42: file link 'lm.wfit' in package 'stats' does not exist and so has been treated as a topic mob html mob_control html model.frame.rpart html nodeapply html nodeids html panelfunctions html party-coercion html party-methods html party-plot html party-predict html party html partynode-methods html partynode html partysplit html prune.modelparty html Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/prune.modelparty.Rd:31: file link 'prune' in package 'rpart' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpbqP5y4/R.INSTALLf3c7ae09022/partykit/man/prune.modelparty.Rd:58: file link 'prune' in package 'rpart' does not exist and so has been treated as a topic varimp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (partykit) Making 'packages.html' ... done * installing *source* package 'C50' ... ** package 'C50' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c attwinnow.c -o attwinnow.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c classify.c -o classify.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c confmat.c -o confmat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c construct.c -o construct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c contin.c -o contin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c discr.c -o discr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c formrules.c -o formrules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c formtree.c -o formtree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c getdata.c -o getdata.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c getnames.c -o getnames.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c global.c -o global.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c hash.c -o hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c hooks.c -o hooks.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c implicitatt.c -o implicitatt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c info.c -o info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c mcost.c -o mcost.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c modelfiles.c -o modelfiles.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c p-thresh.c -o p-thresh.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c prune.c -o prune.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rc50.c -o rc50.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c redefine.c -o redefine.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rsample.c -o rsample.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rulebasedmodels.c -o rulebasedmodels.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c rules.c -o rules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c ruletree.c -o ruletree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c siftrules.c -o siftrules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c sort.c -o sort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c strbuf.c -o strbuf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c subset.c -o subset.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c top.c -o top.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c trees.c -o trees.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c update.c -o update.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c utility.c -o utility.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNDEBUG -I/usr/local/include -g -fpic -g -O2 -c xval.c -o xval.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o C50.so attwinnow.o classify.o confmat.o construct.o contin.o discr.o formrules.o formtree.o getdata.o getnames.o global.o hash.o hooks.o implicitatt.o info.o mcost.o modelfiles.o p-thresh.o prune.o rc50.o redefine.o rsample.o rulebasedmodels.o rules.o ruletree.o siftrules.o sort.o strbuf.o subset.o top.o trees.o update.o utility.o xval.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-C50/00new/C50/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'C50' finding HTML links ... done C5.0 html C5.0Control html C5imp html as.party.C5.0 html plot.C5.0 html Rd warning: /tmp/RtmpqI4oDk/R.INSTALLfc3472ca344/C50/man/plot.C5.0.Rd:22: file link 'plot.party' in package 'partykit' does not exist and so has been treated as a topic predict.C5.0 html summary.C5.0 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (C50) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'mockery', 'prettycode' * installing *source* package 'mockery' ... ** package 'mockery' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mockery' finding HTML links ... done call-expectations html mock html finding level-2 HTML links ... done mockery html stub html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mockery) Making 'packages.html' ... done * installing *source* package 'prettycode' ... ** package 'prettycode' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'prettycode' finding HTML links ... done color_brackets html default_style html highlight html prettycode html print.function html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettycode) Making 'packages.html' ... done * installing *source* package 'cli' ... ** package 'cli' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cli' finding HTML links ... done ansi-styles html ansi_align html ansi_columns html ansi_has_any html ansi_hide_cursor html ansi_nchar html ansi_regex html ansi_strip html ansi_strsplit html ansi_strtrim html ansi_strwrap html ansi_substr html ansi_substring html ansi_toupper html ansi_trimws html boxx html builtin_theme html cat_line html cli html cli_alert html cli_blockquote html cli_bullets html cli_code html cli_debug_doc html cli_div html cli_dl html cli_end html cli_format html cli_format_method html cli_h1 html cli_li html cli_list_themes html cli_ol html cli_output_connection html cli_par html cli_process_start html cli_rule html cli_sitrep html cli_status html cli_status_clear html cli_status_update html cli_text html cli_ul html cli_vec html cli_verbatim html combine_ansi_styles html console_width html containers html demo_spinners html faq html format_error html get_spinner html inline-markup html is_ansi_tty html is_dynamic_tty html is_utf8_output html list_spinners html make_ansi_style html make_spinner html match_selector html match_selector_node html num_ansi_colors html parse_selector html pluralization-helpers html pluralization html pluralize html rule html simple_theme html spark_bar html spark_line html start_app html style_hyperlink html symbol html test_that_cli html themes html tree html unicode-width-workaround html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'credentials', 'fastmap', 'later', 'selectr', 'systemfonts', 'textshaping', 'gert', 'rappdirs', 'whisker', 'cachem', 'xopen', 'brew', 'crosstalk', 'promises', 'clisymbols', 'rvest', 'gitcreds', 'ini', 'gargle', 'cyclocomp', 'xmlparsedata', 'downlit', 'ragg', 'assertthat', 'parsedate', 'uuid', 'whoami', 'usethis', 'fs', 'memoise', 'pkgbuild', 'rcmdcheck', 'remotes', 'roxygen2', 'rversions', 'sessioninfo', 'BiocManager', 'DT', 'foghorn', 'gh', 'gmailr', 'lintr', 'pingr', 'pkgdown', 'rhub' * installing *source* package 'credentials' ... ** package 'credentials' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'credentials' finding HTML links ... done credential_api html credential_helper html http_credentials html set_github_pat html ssh_credentials html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (credentials) Making 'packages.html' ... done * installing *source* package 'fastmap' ... ** package 'fastmap' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fastmap' finding HTML links ... done fastmap html fastqueue html faststack html key_missing html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) Making 'packages.html' ... done * installing *source* package 'later' ... ** package 'later' successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c callback_registry.cpp -o callback_registry.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c debug.cpp -o debug.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c later.cpp -o later.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c later_posix.cpp -o later_posix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c later_win32.cpp -o later_win32.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c timer_posix.cpp -o timer_posix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c timestamp_unix.cpp -o timestamp_unix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c timestamp_win32.cpp -o timestamp_win32.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tinycthread.c -o tinycthread.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'later' finding HTML links ... done create_loop html later html list_queue html logLevel html loop_empty html next_op_secs html run_now html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) Making 'packages.html' ... done * installing *source* package 'selectr' ... ** package 'selectr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'selectr' finding HTML links ... done css_to_xpath html querySelectorAll html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (selectr) Making 'packages.html' ... done * installing *source* package 'systemfonts' ... ** package 'systemfonts' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid Using PKG_LIBS=-lfontconfig -lfreetype ** libs rm -f systemfonts.so caches.o cpp11.o dev_metrics.o font_matching.o font_registry.o ft_cache.o string_shape.o font_metrics.o font_fallback.o string_metrics.o emoji.o cache_store.o init.o unix/FontManagerLinux.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c caches.cpp -o caches.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c dev_metrics.cpp -o dev_metrics.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c font_matching.cpp -o font_matching.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c font_registry.cpp -o font_registry.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c ft_cache.cpp -o ft_cache.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c string_shape.cpp -o string_shape.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c font_metrics.cpp -o font_metrics.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c font_fallback.cpp -o font_fallback.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c string_metrics.cpp -o string_metrics.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c emoji.cpp -o emoji.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cache_store.cpp -o cache_store.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c unix/FontManagerLinux.cpp -o unix/FontManagerLinux.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o systemfonts.so caches.o cpp11.o dev_metrics.o font_matching.o font_registry.o ft_cache.o string_shape.o font_metrics.o font_fallback.o string_metrics.o emoji.o cache_store.o init.o unix/FontManagerLinux.o -lfontconfig -lfreetype -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-systemfonts/00new/systemfonts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'systemfonts' finding HTML links ... done font_fallback html font_feature html font_info html get_fallback html glyph_info html match_font html register_font html register_variant html reset_font_cache html shape_string html str_split_emoji html string_metrics_dev html string_width html string_widths_dev html system_fonts html systemfonts-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (systemfonts) Making 'packages.html' ... done * installing *source* package 'rappdirs' ... ** package 'rappdirs' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rappdirs' finding HTML links ... done app_dir html rappdirs-package html site_data_dir html user_cache_dir html user_data_dir html user_log_dir html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) Making 'packages.html' ... done * installing *source* package 'whisker' ... ** package 'whisker' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'whisker' finding HTML links ... done delimit html isFalsey html iteratelist html rowSplit html rxsplit html tag2delim html whisker-package html whisker.escape html whisker.render html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whisker) Making 'packages.html' ... done * installing *source* package 'xopen' ... ** package 'xopen' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xopen' finding HTML links ... done wait_for_finish html xopen html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xopen) Making 'packages.html' ... done * installing *source* package 'brew' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'brew' finding HTML links ... done brew html brewCache html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brew) Making 'packages.html' ... done * installing *source* package 'crosstalk' ... ** package 'crosstalk' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'crosstalk' finding HTML links ... done ClientValue html SharedData html bscols html crosstalkLibs html filter_select html filter_slider html finding level-2 HTML links ... done getDefaultReactiveDomain html is.SharedData html maintain_selection html scale_fill_selection html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crosstalk) Making 'packages.html' ... done * installing *source* package 'clisymbols' ... ** package 'clisymbols' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'clisymbols' finding HTML links ... done symbol html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clisymbols) Making 'packages.html' ... done * installing *source* package 'gitcreds' ... ** package 'gitcreds' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gitcreds' finding HTML links ... done gitcreds-api html gitcreds_cache_envvar html gitcreds_get html gitcreds_list html gitcreds_parse_output html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gitcreds) Making 'packages.html' ... done * installing *source* package 'ini' ... ** package 'ini' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ini' finding HTML links ... done read.ini html write.ini html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ini) Making 'packages.html' ... done * installing *source* package 'xmlparsedata' ... ** package 'xmlparsedata' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xmlparsedata' finding HTML links ... done xml_parse_data html xml_parse_token_map html xmlparsedata html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xmlparsedata) Making 'packages.html' ... done * installing *source* package 'downlit' ... ** package 'downlit' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'downlit' finding HTML links ... done autolink html downlit-package html downlit_html_path html downlit_md_path html evaluate_and_highlight html highlight html href_topic html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (downlit) Making 'packages.html' ... done * installing *source* package 'assertthat' ... ** package 'assertthat' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'assertthat' finding HTML links ... done are_equal html assert-is html assert_that html assertions-file html has_args html has_attr html noNA html not_empty html on_failure html scalar html validate_that html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (assertthat) Making 'packages.html' ... done * installing *source* package 'parsedate' ... ** package 'parsedate' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c date.c -o date.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mingw.c -o mingw.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rdate.c -o rdate.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o parsedate.so date.o mingw.o rdate.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-parsedate/00new/parsedate/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'parsedate' finding HTML links ... done format_iso_8601 html parse_date html parse_iso_8601 html parsedate-package html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parsedate) Making 'packages.html' ... done * installing *source* package 'uuid' ... ** package 'uuid' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/syscall.h usability... yes checking sys/syscall.h presence... yes checking for sys/syscall.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking for unistd.h... (cached) yes checking for net/if.h... yes checking for net/if_dl.h... no checking for jrand48... yes checking for flock... yes checking for struct sockaddr.sa_len... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for library containing dlsym... -ldl configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c R.c -o R.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c clear.c -o clear.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c compare.c -o compare.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c copy.c -o copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c gen_uuid.c -o gen_uuid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c isnull.c -o isnull.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c pack.c -o pack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c parse.c -o parse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c unpack.c -o unpack.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -fpic -g -O2 -c unparse.c -o unparse.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o uuid.so R.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o rand.o unpack.o unparse.o -ldl -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-uuid/00new/uuid/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'uuid' finding HTML links ... done UUIDgenerate html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (uuid) Making 'packages.html' ... done * installing *source* package 'whoami' ... ** package 'whoami' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'whoami' finding HTML links ... done email_address html fullname html gh_username html username html whoami html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whoami) Making 'packages.html' ... done * installing *source* package 'fs' ... ** package 'fs' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o (cd libuv-1.38.1 \ && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) ./configure: line 7172: /usr/bin/file: No such file or directory make --directory=libuv-1.38.1 \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/Rtmp81ZKC1/R.INSTALL208955fd9707/fs/src/libuv-1.38.1' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CCLD libuv.la make[1]: Leaving directory '/tmp/Rtmp81ZKC1/R.INSTALL208955fd9707/fs/src/libuv-1.38.1' g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fs.so init.o id.o file.o path.o fs.o link.o utils.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fs' finding HTML links ... done copy html create html delete html dir_ls html dir_tree html file_access html file_chmod html file_chown html file_info html file_move html file_show html file_temp html file_touch html fs-package html fs_bytes html fs_path html fs_perms html id html is_absolute_path html is_file html link_path html path html path_expand html path_file html path_filter html path_math html path_package html path_sanitize html path_tidy html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) Making 'packages.html' ... done * installing *source* package 'pkgbuild' ... ** package 'pkgbuild' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pkgbuild' finding HTML links ... done build html clean_dll html compile_dll html compiler_flags html has_build_tools html has_compiler html has_latex html has_rtools html needs_compile html pkg_has_src html pkg_links_to_rcpp html pkgbuild_process html rcmd_build_tools html rtools_needed html with_debug html without_compiler html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) Making 'packages.html' ... done * installing *source* package 'remotes' ... ** package 'remotes' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'remotes' finding HTML links ... done available_packages html bioc_install_repos html download html download_version html git_credentials html github_refs html github_remote html gitlab_pat html install_bioc html install_bitbucket html install_cran html install_deps html install_dev html install_git html install_github html install_gitlab html install_local html install_remote html install_svn html install_url html install_version html package_deps html parse-git-repo html standardise_dep html system_requirements html update_packages html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (remotes) Making 'packages.html' ... done * installing *source* package 'rversions' ... ** package 'rversions' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rversions' finding HTML links ... done r_oldrel html r_release html r_release_macos html r_release_tarball html r_release_win html r_versions html rversions-package html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rversions) Making 'packages.html' ... done * installing *source* package 'sessioninfo' ... ** package 'sessioninfo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sessioninfo' finding HTML links ... done os_name html package_info html platform_info html Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:16: file link '.Platform' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:33: file link 'R.version.string' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:33: file link 'version' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:34: file link '.Platform' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:34: file link 'Sys.getlocale' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpY0iOEj/R.INSTALL60321fb27a13/sessioninfo/man/platform_info.Rd:34: file link 'Sys.timezone' in package 'base' does not exist and so has been treated as a topic session_info html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sessioninfo) Making 'packages.html' ... done * installing *source* package 'BiocManager' ... ** package 'BiocManager' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BiocManager' finding HTML links ... done BiocManager-pkg html available html install html repositories html valid html version html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in file(con, "r") : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' Warning in file(con, "r") : cannot open URL 'http://bioconductor.org/config.yaml': HTTP status was '503 Service Unavailable' ** testing if installed package can be loaded from final location Warning in file(con, "r") : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' Warning in file(con, "r") : cannot open URL 'http://bioconductor.org/config.yaml': HTTP status was '503 Service Unavailable' ** testing if installed package keeps a record of temporary installation path * DONE (BiocManager) Making 'packages.html' ... done * installing *source* package 'pingr' ... ** package 'pingr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dns.c -o dns.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rping.c -o rping.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o pingr.so dns.o errors.o init.o rping.o -lresolv -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-pingr/00new/pingr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pingr' finding HTML links ... done apple_captive_test html is_online html my_ip html nsl html ping html ping_port html pingr-package html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pingr) Making 'packages.html' ... done * installing *source* package 'textshaping' ... ** package 'textshaping' successfully unpacked and MD5 sums checked ** using staged installation Package fribidi was not found in the pkg-config search path. Perhaps you should add the directory containing `fribidi.pc' to the PKG_CONFIG_PATH environment variable Package 'fribidi', required by 'virtual:world', not found Using PKG_CFLAGS= Using PKG_LIBS=-lfreetype -lharfbuzz -lfribidi -lpng --------------------------- [ANTICONF] -------------------------------- Configuration failed to find the harfbuzz freetype2 fribidi library. Try installing: * deb: libharfbuzz-dev libfribidi-dev (Debian, Ubuntu, etc) * rpm: harfbuzz-devel fribidi-devel (Fedora, EPEL) * csw: libharfbuzz_dev libfribidi_dev (Solaris) * brew: harfbuzz fribidi (OSX) If harfbuzz freetype2 fribidi is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a harfbuzz freetype2 fribidi.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- :1:10: fatal error: hb-ft.h: No such file or directory compilation terminated. -------------------------------------------------------------------- ERROR: configuration failed for package 'textshaping' * removing '/opt/R/4.0.3/lib/R/library/textshaping' * installing *source* package 'gert' ... ** package 'gert' successfully unpacked and MD5 sums checked ** using staged installation > curl::curl_download("https://r-lib.github.io/gert/get-libgit2-linux.sh","get-libgit2-linux.sh") Error in curl::curl_download("https://r-lib.github.io/gert/get-libgit2-linux.sh", : Timeout was reached: [] Operation timed out after 10001 milliseconds with 0 out of 0 bytes received Execution halted Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lgit2 Configuration OK! ** libs rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gert/00new/gert/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gert' finding HTML links ... done git_archive html git_branch html git_commit html git_config html git_diff html git_fetch html git_merge html git_open html git_rebase html git_remote html git_repo html git_signature html git_stash html git_submodule html git_tag html github html libgit2_config html user_is_configured html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gert) Making 'packages.html' ... done * installing *source* package 'cachem' ... ** package 'cachem' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cachem' finding HTML links ... done cache_disk html cache_layered html cache_mem html reexports html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) Making 'packages.html' ... done * installing *source* package 'promises' ... ** package 'promises' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/later/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/later/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c promise_task.cpp -o promise_task.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o promises.so RcppExports.o promise_task.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'promises' finding HTML links ... done WorkQueue html future_promise html is.promise html pipes html promise html promise_all html promise_map html promise_reduce html promise_resolve html reexports html resolve html then html with_promise_domain html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) Making 'packages.html' ... done * installing *source* package 'rvest' ... ** package 'rvest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rvest' finding HTML links ... done google_form html html_attr html html_children html html_element html html_encoding_guess html html_form html html_name html html_table html html_text html minimal_html html reexports html rename html repair_encoding html rvest-package html session html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvest) Making 'packages.html' ... done * installing *source* package 'gargle' ... ** package 'gargle' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gargle' finding HTML links ... done AuthState-class html Gargle-class html Rd warning: /tmp/RtmpiD0u1Q/R.INSTALL64b8687971ee/gargle/man/Gargle-class.Rd:29: file link 'Token' in package 'httr' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpiD0u1Q/R.INSTALL64b8687971ee/gargle/man/Gargle-class.Rd:29: file link 'Token2.0' in package 'httr' does not exist and so has been treated as a topic GceToken html Rd warning: /tmp/RtmpiD0u1Q/R.INSTALL64b8687971ee/gargle/man/GceToken.Rd:16: file link 'Token' in package 'httr' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpiD0u1Q/R.INSTALL64b8687971ee/gargle/man/GceToken.Rd:16: file link 'Token2.0' in package 'httr' does not exist and so has been treated as a topic cred_funs html credentials_app_default html credentials_byo_oauth2 html credentials_gce html credentials_service_account html credentials_user_oauth2 html field_mask html gargle-package html gargle2.0_token html gargle_api_key html gargle_app html gargle_oauth_sitrep html gargle_options html init_AuthState html internal-assets html oauth_app_from_json html request_develop html request_make html finding level-2 HTML links ... done request_retry html response_process html token-info html token_fetch html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gargle) Making 'packages.html' ... done * installing *source* package 'cyclocomp' ... ** package 'cyclocomp' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cyclocomp' finding HTML links ... done cyclocomp html cyclocomp_package html cyclocomp_package_dir html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyclocomp) Making 'packages.html' ... done * installing *source* package 'rcmdcheck' ... ** package 'rcmdcheck' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rcmdcheck' finding HTML links ... done check_details html compare_checks html compare_to_cran html cran_check_flavours html cran_check_results html data_frame html myrep html parse_check html parse_check_url html print.rcmdcheck html print.rcmdcheck_comparison html rcmdcheck html rcmdcheck_process html xopen.rcmdcheck html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcmdcheck) Making 'packages.html' ... done * installing *source* package 'roxygen2' ... ** package 'roxygen2' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-roxygen2/00new/roxygen2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'roxygen2' finding HTML links ... done RoxyTopic html double_escape_md html escape_examples html is_s3_generic html load html load_options html markdown-internals html markdown-test html markdown_pass1 html namespace_roclet html object html object_format html parse_package html rd_roclet html rd_section html roc_proc_text html roclet html roclet_find html roxy_block html roxy_tag html roxy_tag_rd html roxygen2-package html roxygenize html tag_parsers html update_collate html vignette_roclet html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxygen2) Making 'packages.html' ... done * installing *source* package 'gh' ... ** package 'gh' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gh' finding HTML links ... done gh-package html gh html gh_gql html gh_next html gh_rate_limit html gh_token html gh_tree_remote html gh_whoami html print.gh_response html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gh) Making 'packages.html' ... done ERROR: dependency 'textshaping' is not available for package 'ragg' * removing '/opt/R/4.0.3/lib/R/library/ragg' * installing *source* package 'usethis' ... ** package 'usethis' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'usethis' finding HTML links ... done badges html browse-this html ci html create_from_github html create_package html edit html edit_file html git_branch_default html git_credentials html git_protocol html git_sitrep html git_vaccinate html github-token html github_actions html issue-this html licenses html proj_activate html proj_sitrep html proj_utils html pull-requests html rename_files html rprofile-helper html tidyverse html ui-questions html ui html use_addin html use_blank_slate html use_build_ignore html use_citation html use_code_of_conduct html use_course_details html use_coverage html use_cpp11 html use_cran_comments html use_data html use_data_table html use_description html use_directory html use_git html use_git_config html use_git_hook html use_git_ignore html use_git_remote html use_github html use_github_action html use_github_labels html use_github_links html use_github_pages html use_github_release html use_jenkins html use_latest_dependencies html use_lifecycle html use_logo html use_make html use_namespace html use_news_md html use_package html use_package_doc html use_pipe html use_pkgdown html use_r html use_rcpp html use_readme_rmd html use_release_issue html use_revdep html use_rmarkdown_template html use_roxygen_md html use_rstudio html use_spell_check html use_template html use_testthat html use_tibble html use_tidy_thanks html use_tutorial html use_version html use_vignette html usethis-defunct html usethis-package html write-this html zip-utils html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usethis) Making 'packages.html' ... done * installing *source* package 'memoise' ... ** package 'memoise' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'memoise' finding HTML links ... done cache_filesystem html cache_gcs html cache_memory html cache_s3 html drop_cache html forget html has_cache html is.memoised html memoise html timeout html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) Making 'packages.html' ... done * installing *source* package 'DT' ... ** package 'DT' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DT' finding HTML links ... done DT-imports html coerceValue html dataTableAjax html dataTableOutput html datatable html editData html formatCurrency html proxy html replaceData html styleInterval html tableHeader html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) Making 'packages.html' ... done * installing *source* package 'foghorn' ... ** package 'foghorn' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foghorn' finding HTML links ... done check_cran_results html cran_details html cran_incoming html cran_results html foghorn html n_cran_flavors html summary_cran_results html visit_cran_check html winbuilder_queue html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foghorn) Making 'packages.html' ... done * installing *source* package 'gmailr' ... ** package 'gmailr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gmailr' finding HTML links ... done accessors html as.character.mime html clear_token html gm_attachment html gm_attachments html gm_auth html Rd warning: /tmp/RtmpAUcLiO/R.INSTALL68f466459e44/gmailr/man/gm_auth.Rd:24: file link 'gargle_oauth_email' in package 'gargle' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpAUcLiO/R.INSTALL68f466459e44/gmailr/man/gm_auth.Rd:38: file link 'gargle_oauth_cache' in package 'gargle' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpAUcLiO/R.INSTALL68f466459e44/gmailr/man/gm_auth.Rd:42: file link 'gargle_oob_default' in package 'gargle' does not exist and so has been treated as a topic gm_auth_configure html Rd warning: /tmp/RtmpAUcLiO/R.INSTALL68f466459e44/gmailr/man/gm_auth_configure.Rd:33: file link 'AuthState' in package 'gargle' does not exist and so has been treated as a topic gm_body html gm_create_draft html gm_create_label html gm_deauth html gm_delete_draft html gm_delete_label html gm_delete_message html gm_delete_thread html gm_draft html gm_drafts html gm_has_token html gm_history html gm_id html gm_import_message html gm_insert_message html gm_label html gm_labels html gm_last_response html gm_message html gm_messages html gm_mime html gm_modify_message html gm_modify_thread html gm_profile html gm_save_attachment html gm_save_attachments html gm_send_draft html gm_send_message html gm_thread html gm_threads html gm_token html Rd warning: /tmp/RtmpAUcLiO/R.INSTALL68f466459e44/gmailr/man/gm_token.Rd:10: file link 'httr' in package 'httr' does not exist and so has been treated as a topic gm_trash_message html gm_trash_thread html gm_untrash_message html gm_untrash_thread html gm_update_label html gmail_auth html gmailr-deprecated html gmailr html pipe html quoted_printable_encode html use_secret_file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gmailr) Making 'packages.html' ... done * installing *source* package 'lintr' ... ** package 'lintr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lintr' finding HTML links ... done Lint html checkstyle_output html clear_cache html default_linters html default_settings html default_undesirable_functions html exclude html expect_lint html expect_lint_free html get_source_expressions html ids_with_token html lint_dir html lint_file html lint_package html linters html Rd warning: /tmp/RtmpTOaVbq/R.INSTALL69666bc331b6/lintr/man/linters.Rd:217: file link 'seq_len' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpTOaVbq/R.INSTALL69666bc331b6/lintr/man/linters.Rd:218: file link 'seq_along' in package 'base' does not exist and so has been treated as a topic lintr-deprecated html lintr html parse_exclusions html read_settings html Rd warning: /tmp/RtmpTOaVbq/R.INSTALL69666bc331b6/lintr/man/read_settings.Rd:24: file link 'read.dcf' in package 'base' does not exist and so has been treated as a topic with_defaults html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lintr) Making 'packages.html' ... done * installing *source* package 'rhub' ... ** package 'rhub' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rhub' finding HTML links ... done check html check_for_cran html check_shortcuts html get_check html last_check html list_my_checks html list_package_checks html list_validated_emails html local_check_linux html local_check_linux_images html platforms html rhub-ids html rhub-package html rhub_check html validate_email html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhub) Making 'packages.html' ... done ERROR: dependency 'ragg' is not available for package 'pkgdown' * removing '/opt/R/4.0.3/lib/R/library/pkgdown' * installing *source* package 'devtools' ... ** package 'devtools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'devtools' finding HTML links ... done as.package html bash html build html build_manual html build_rmd html build_site html build_vignettes html check html finding level-2 HTML links ... done check_man html check_rhub html check_win html clean_vignettes html create html dev_mode html dev_packages html dev_sitrep html devtools-deprecated html devtools html document html git_checks html github_pat html has_tests html install html install_deps html is.package html lint html load_all html loaded_packages html missing_s3 html package_file html r_env_vars html reexports html release html release_checks html reload html remote-reexports html revdep html run_examples html save_all html show_news html source_gist html source_url html spell_check html submit_cran html test html uninstall html uses_testthat html wd html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (devtools) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Loading required package: usethis also installing the dependencies 'httpuv', 'sourcetools', 'sass', 'jquerylib', 'shiny', 'bslib', 'testit' * installing *source* package 'httpuv' ... ** package 'httpuv' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c RcppExports-legacy.cpp -o RcppExports-legacy.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c callback.cpp -o callback.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c callbackqueue.cpp -o callbackqueue.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c filedatasource-unix.cpp -o filedatasource-unix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c filedatasource-win.cpp -o filedatasource-win.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c fs.cpp -o fs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c http.cpp -o http.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c httprequest.cpp -o httprequest.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c httpresponse.cpp -o httpresponse.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c httpuv.cpp -o httpuv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c md5.c -o md5.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c mime.cpp -o mime.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c set_invalid_parameter.c -o set_invalid_parameter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c socket.cpp -o socket.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c staticpath.cpp -o staticpath.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c thread.cpp -o thread.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c timegm.cpp -o timegm.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c utils.cpp -o utils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c uvutil.cpp -o uvutil.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c webapplication.cpp -o webapplication.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c websockets-base.cpp -o websockets-base.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c websockets-hixie76.cpp -o websockets-hixie76.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c websockets-hybi03.cpp -o websockets-hybi03.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c websockets-ietf.cpp -o websockets-ietf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c websockets.cpp -o websockets.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c winutils.cpp -o winutils.o cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 (cd libuv \ && touch aclocal.m4 \ && touch -r aclocal.m4 configure Makefile.in \ && chmod +x configure \ && CC="gcc" CFLAGS="-g -O2 -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure "--quiet") ./configure: line 7169: /usr/bin/file: No such file or directory make --directory=libuv \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/RtmpWJFKdc/R.INSTALL6ad54f83e50b/httpuv/src/libuv' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-sysinfo-loadavg.lo CCLD libuv.la make[1]: Leaving directory '/tmp/RtmpWJFKdc/R.INSTALL6ad54f83e50b/httpuv/src/libuv' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c http-parser/http_parser.c -o http-parser/http_parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c sha1/sha1.c -o sha1/sha1.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/later/include' -I/usr/local/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -c base64/base64.cpp -o base64/base64.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o set_invalid_parameter.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'httpuv' finding HTML links ... done PipeServer html Server html WebServer html WebSocket html encodeURI html getRNGState html httpuv-package html interrupt html ipFamily html listServers html logLevel html randomPort html rawToBase64 html runServer html service html startDaemonizedServer html startServer html staticPath html staticPathOptions html stopAllServers html stopDaemonizedServer html stopServer html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) Making 'packages.html' ... done * installing *source* package 'sourcetools' ... ** package 'sourcetools' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c Reader.cpp -o Reader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c Tokenizer.cpp -o Tokenizer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -fpic -g -O2 -c sourcetools-init.c -o sourcetools-init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sourcetools' finding HTML links ... done read html tokenize-methods html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) Making 'packages.html' ... done * installing *source* package 'sass' ... ** package 'sass' successfully unpacked and MD5 sums checked ** using staged installation ** libs /opt/R/4.0.3/lib/R/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libsass/include -I/usr/local/include -fpic -g -O2 -c compile.c -o compile.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./libsass/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o MAKEFLAGS= CC="gcc" CFLAGS="-g -O2 " CXX="g++ -std=gnu++11" AR="ar" LDFLAGS="-L/usr/local/lib" make -C libsass make[1]: Entering directory '/tmp/RtmpMqpyV9/R.INSTALL2c454b3ffc86/sass/src/libsass' gcc -g -O2 -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp g++ -std=gnu++11 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[1]: Leaving directory '/tmp/RtmpMqpyV9/R.INSTALL2c454b3ffc86/sass/src/libsass' gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sass.so compile.o init.o ./libsass/lib/libsass.a -lstdc++ -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sass' finding HTML links ... done FileCache html as_sass html as_sass_layer html output_template html sass-deprecated html sass html sass_cache_context_dir html sass_cache_get html sass_cache_get_dir html sass_cache_options html sass_file_cache html sass_import html sass_layer html sass_options html sass_partial html write_file_attachments html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) Making 'packages.html' ... done * installing *source* package 'jquerylib' ... ** package 'jquerylib' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'jquerylib' finding HTML links ... done jquery_core html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) Making 'packages.html' ... done * installing *source* package 'testit' ... ** package 'testit' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'testit' finding HTML links ... done assert html has_message html test_pkg html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testit) Making 'packages.html' ... done * installing *source* package 'DT' ... ** package 'DT' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DT' finding HTML links ... done DT-imports html coerceValue html dataTableAjax html dataTableOutput html datatable html editData html formatCurrency html proxy html replaceData html styleInterval html tableHeader html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) Making 'packages.html' ... done * installing *source* package 'bslib' ... ** package 'bslib' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bslib' finding HTML links ... done bootswatch_themes html bs_bundle html bs_current_theme html bs_dependency html finding level-2 HTML links ... done bs_get_variables html bs_global_theme html bs_remove html bs_theme html bs_theme_dependencies html bs_theme_preview html deprecated html font_face html pipe html precompiled_css_path html run_with_themer html theme_bootswatch html theme_version html versions html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) Making 'packages.html' ... done * installing *source* package 'shiny' ... ** package 'shiny' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shiny' finding HTML links ... done MockShinySession html NS html Progress html absolutePanel html actionButton html applyInputHandlers html bindCache html bindEvent html bookmarkButton html bootstrapLib html bootstrapPage html brushOpts html brushedPoints html callModule html checkboxGroupInput html checkboxInput html clickOpts html column html conditionalPanel html createRenderFunction html createWebDependency html dateInput html dateRangeInput html debounce html deprecatedReactives html devmode html diskCache html domains html downloadButton html downloadHandler html enableBookmarking html exportTestValues html exprToFunction html fileInput html fillPage html fillRow html fixedPage html flowLayout html fluidPage html freezeReactiveValue html getCurrentOutputInfo html getCurrentTheme html getQueryString html headerPanel html helpText html htmlOutput html httpResponse html icon html inputPanel html insertTab html insertUI html installExprFunction html invalidateLater html is.reactivevalues html isRunning html isolate html knitr_methods html loadSupport html makeReactiveBinding html markOutputAttrs html markRenderFunction html markdown html maskReactiveContext html memoryCache html modalDialog html moduleServer html navbarPage html navlistPanel html numericInput html observe html observeEvent html onBookmark html onFlush html onStop html outputOptions html pageWithSidebar html parseQueryString html passwordInput html plotOutput html plotPNG html quoToFunction html radioButtons html reactive html reactiveConsole html reactiveFileReader html reactivePoll html reactiveTimer html reactiveVal html reactiveValues html reactiveValuesToList html reactlog html reexports html registerInputHandler html registerThemeDependency html finding level-2 HTML links ... done removeInputHandler html renderCachedPlot html renderDataTable html renderImage html renderPlot html renderPrint html renderTable html renderUI html repeatable html req html resourcePaths html restoreInput html runApp html runExample html runGadget html runTests html runUrl html safeError html selectInput html serverInfo html session html setBookmarkExclude html setSerializer html shiny-package html shiny.appobj html shinyApp html shinyAppTemplate html shinyDeprecated html shinyOptions html shinyServer html shinyUI html showBookmarkUrlModal html showModal html showNotification html showTab html sidebarLayout html sizeGrowthRatio html sliderInput html snapshotExclude html snapshotPreprocessInput html snapshotPreprocessOutput html splitLayout html stacktrace html stopApp html submitButton html tabPanel html tableOutput html tabsetPanel html testServer html textAreaInput html textInput html textOutput html titlePanel html updateActionButton html updateCheckboxGroupInput html updateCheckboxInput html updateDateInput html updateDateRangeInput html updateNumericInput html updateQueryString html updateRadioButtons html updateSelectInput html updateSliderInput html updateTabsetPanel html updateTextAreaInput html updateTextInput html urlModal html validate html varSelectInput html verticalLayout html viewer html wellPanel html withMathJax html withProgress html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'ECharts2Shiny' ... ** package 'ECharts2Shiny' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ECharts2Shiny' finding HTML links ... done deliverChart html loadEChartsLibrary html loadEChartsTheme html renderBarChart html renderGauge html renderHeatMap html renderLineChart html renderPieChart html renderRadarChart html renderScatter html renderTreeMap html renderWordcloud html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ECharts2Shiny) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'feather' ... ** package 'feather' successfully unpacked and MD5 sums checked ** using staged installation Platform is little endian. Good. ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather-read.cpp -o feather-read.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather-types.cpp -o feather-types.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather-write.cpp -o feather-write.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/buffer.cc -o feather/buffer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/feather-c.cc -o feather/feather-c.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/io.cc -o feather/io.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/metadata.cc -o feather/metadata.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/reader.cc -o feather/reader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/status.cc -o feather/status.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/types.cc -o feather/types.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c feather/writer.cc -o feather/writer.o ar rcs libfeather.a feather/buffer.o feather/feather-c.o feather/io.o feather/metadata.o feather/reader.o feather/status.o feather/types.o feather/writer.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o feather.so RcppExports.o feather-read.o feather-types.o feather-write.o -L. -lfeather -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-feather/00new/feather/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'feather' finding HTML links ... done feather html feather_example html feather_metadata html read_feather html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (feather) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'flexdashboard' ... ** package 'flexdashboard' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flexdashboard' finding HTML links ... done flex_dashboard html flexdashboard html gauge-shiny html gauge html valueBox-shiny html valueBox html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flexdashboard) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Attaching package: 'flexdashboard' The following object is masked from 'package:ECharts2Shiny': renderGauge also installing the dependencies 'xslt', 'locatexec', 'officer', 'gdtools', 'webshot', 'magick', 'bookdown', 'equatags' * installing *source* package 'xslt' ... ** package 'xslt' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lexslt -lxslt -lm -lgcrypt -ldl -lgpg-error -lxml2 ** libs rm -f RcppExports.o xslt.o xslt_init.o xslt.so g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/xml2/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/xml2/include' -I/usr/local/include -fpic -g -O2 -c xslt.cpp -o xslt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/xml2/include' -I/usr/local/include -fpic -g -O2 -c xslt_init.cpp -o xslt_init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xslt.so RcppExports.o xslt.o xslt_init.o -lexslt -lxslt -lm -lgcrypt -ldl -lgpg-error -lxml2 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xslt/00new/xslt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xslt' finding HTML links ... done xslt html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xslt) Making 'packages.html' ... done * installing *source* package 'locatexec' ... ** package 'locatexec' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'locatexec' finding HTML links ... done chrome_exec html excel_exec html exec_available html exec_locate html exec_version html firefox_exec html is_osx html is_unix html is_windows html libreoffice_exec html node_exec html npm_exec html pip_exec html powerpoint_exec html python_exec html word_exec html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locatexec) Making 'packages.html' ... done * installing *source* package 'officer' ... ** package 'officer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'officer' finding HTML links ... done add_sheet html add_slide html annotate_base html block_caption html block_list html block_pour_docx html block_section html block_table html block_toc html body_add html body_add_blocks html body_add_break html body_add_caption html body_add_docx html body_add_fpar html body_add_gg html body_add_img html body_add_par html body_add_plot html body_add_table html body_add_toc html body_add_xml html body_bookmark html body_end_block_section html body_end_section_columns html body_end_section_columns_landscape html body_end_section_continuous html body_end_section_landscape html body_end_section_portrait html body_remove html body_replace_all_text html body_replace_text_at_bkm html body_set_default_section html change_styles html color_scheme html cursor html doc_properties html docx_body_relationship html docx_body_xml html docx_bookmarks html docx_dim html docx_reference_img html docx_show_chunk html docx_summary html empty_content html external_img html fortify_location html fp_border html fp_cell html fp_par html fp_text html fpar html ftext html get_reference_value html hyperlink_ftext html layout_properties html layout_summary html length.rdocx html length.rpptx html media_extract html move_slide html officer-defunct html officer html on_slide html opts_current_table html pack_folder html page_mar html page_size html ph_add_fpar html ph_add_par html ph_add_text html ph_hyperlink html ph_location html ph_location_fullsize html ph_location_label html ph_location_left html ph_location_right html ph_location_template html ph_location_type html ph_remove html ph_slidelink html ph_with html plot_instr html plot_layout_properties html pptx_summary html print.rpptx html prop_section html prop_table html read_docx html read_pptx html read_xlsx html remove_slide html run_autonum html run_bookmark html run_columnbreak html run_linebreak html run_pagebreak html run_reference html run_word_field html sanitize_images html section_columns html set_doc_properties html sheet_select html shortcuts html slide_size html slide_summary html slip_in_column_break html slip_in_footnote html slip_in_img html slip_in_seqfield html slip_in_text html slip_in_xml html styles_info html table_colwidths html table_conditional_formatting html table_layout html table_stylenames html table_width html to_html html to_pml html to_wml html unordered_list html unpack_folder html wml_link_images html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officer) Making 'packages.html' ... done * installing *source* package 'gdtools' ... ** package 'gdtools' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid Using PKG_LIBS=-lcairo -lfreetype ** libs rm -f gdtools.so CairoContext.o RcppExports.o font_metrics.o gdtools.o raster_to_base64.o versions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c CairoContext.cpp -o CairoContext.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c font_metrics.cpp -o font_metrics.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gdtools.cpp -o gdtools.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c raster_to_base64.cpp -o raster_to_base64.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I../inst/include/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c versions.cpp -o versions.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o gdtools.so CairoContext.o RcppExports.o font_metrics.o gdtools.o raster_to_base64.o versions.o -lcairo -lfreetype -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-gdtools/00new/gdtools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gdtools' finding HTML links ... done font_family_exists html fontconfig_reinit html glyphs_match html m_str_extents html match_family html raster_str html raster_write html set_dummy_conf html str_extents html str_metrics html sys_fonts html version_cairo html Rd warning: /tmp/Rtmp3wpYVa/R.INSTALL33313a7219e2/gdtools/man/version_cairo.Rd:15: file link 'packageVersion' in package 'utils' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gdtools) Making 'packages.html' ... done * installing *source* package 'webshot' ... ** package 'webshot' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'webshot' finding HTML links ... done appshot html install_phantomjs html is_phantomjs_installed html reexports html Rd warning: /tmp/RtmpNsumnJ/R.INSTALL340c53e974be/webshot/man/reexports.Rd:14: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic resize html rmdshot html shrink html webshot html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webshot) Making 'packages.html' ... done * installing *source* package 'magick' ... ** package 'magick' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 Using PKG_LIBS=-lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c animation.cpp -o animation.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c attributes.cpp -o attributes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base.cpp -o base.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c color.cpp -o color.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c composite.cpp -o composite.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.cc -o config.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c convolve.cpp -o convolve.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c device.cpp -o device.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c edges.cpp -o edges.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c edit.cpp -o edit.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fonts.cpp -o fonts.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c options.cpp -o options.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c properties.cpp -o properties.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c resize.cpp -o resize.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c segment.cpp -o segment.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/ImageMagick-6 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transformations.cpp -o transformations.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-6.Q16 -lMagickWand-6.Q16 -lMagickCore-6.Q16 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'magick' finding HTML links ... done analysis html animation html as_EBImage html attributes html autoviewer html color html composite html config html defines html device html edges html editing html effects html fx html geometry html image_ggplot html magick html morphology html ocr html options html painting html reexports html segmentation html thresholding html transform html video html wizard html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) Making 'packages.html' ... done * installing *source* package 'bookdown' ... ** package 'bookdown' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bookdown' finding HTML links ... done bookdown-package html bookdown_site html bs4_book html build_chapter html calibre html clean_book html epub_book html fence_theorems html gitbook html finding level-2 HTML links ... done html_chapters html html_document2 html kindlegen html pdf_book html publish_book html render_book html resolve_refs_html html serve_book html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bookdown) Making 'packages.html' ... done * installing *source* package 'equatags' ... ** package 'equatags' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'equatags' finding HTML links ... done mathjax_available html mathjax_install html finding level-2 HTML links ... done mathjax_uninstall html transform_mathjax html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equatags) Making 'packages.html' ... done * installing *source* package 'flextable' ... ** package 'flextable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'flextable' finding HTML links ... done add_body html add_header html add_header_lines html add_header_row html align html as_b html as_bracket html as_chunk html as_equation html as_flextable html as_flextable.gam html as_flextable.glm html as_flextable.grouped_data html as_flextable.htest html as_flextable.lm html as_flextable.xtable html as_grouped_data html as_highlight html as_i html as_image html as_paragraph html as_raster html as_sub html as_sup html autofit html bg html body_add_flextable html bold html border html border_inner html finding level-2 HTML links ... done border_inner_h html border_inner_v html border_outer html border_remove html chunk_dataframe html colformat_char html colformat_date html colformat_datetime html colformat_double html colformat_image html colformat_int html colformat_lgl html colformat_num html color html colorize html compose html continuous_summary html delete_part html dim.flextable html dim_pretty html empty_blanks html fit_to_width html fix_border_issues html flextable-package html flextable html flextable_dim html flextable_html_dependency html flextable_to_rmd html font html fontsize html footers_flextable_at_bkm html footnote html fp_border_default html fp_text_default html get_flextable_defaults html gg_chunk html headers_flextable_at_bkm html height html highlight html hline html hline_bottom html hline_top html hrule html htmltools_value html hyperlink_text html italic html knit_print.flextable html line_spacing html linerange html lollipop html merge_at html merge_h html merge_h_range html merge_none html merge_v html minibar html ncol_keys html nrow_part html padding html ph_with.flextable html plot.flextable html plot_chunk html print.flextable html proc_freq html rotate html save_as_docx html save_as_html html save_as_image html save_as_pptx html set_caption html set_flextable_defaults html set_formatter html set_header_footer_df html set_header_labels html set_table_properties html style html theme_alafoli html theme_booktabs html theme_box html theme_tron html theme_tron_legacy html theme_vader html theme_vanilla html theme_zebra html valign html vline html vline_left html vline_right html void html width html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flextable) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'forcats' ... ** package 'forcats' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'forcats' finding HTML links ... done as_factor html fct_anon html fct_c html fct_collapse html fct_count html fct_cross html fct_drop html fct_expand html fct_explicit_na html fct_inorder html fct_lump html fct_match html fct_other html fct_recode html fct_relabel html fct_relevel html fct_reorder html fct_rev html fct_shift html fct_shuffle html fct_unify html fct_unique html forcats-package html gss_cat html lvls html lvls_union html pipe html Rd warning: /tmp/RtmprglkYm/R.INSTALL36f917955f9d/forcats/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forcats) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning messages: 1: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'gmp' had non-zero exit status 2: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'partitions' had non-zero exit status 3: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'rgeos' had non-zero exit status 4: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'binGroup' had non-zero exit status 5: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'sf' had non-zero exit status 6: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'spdep' had non-zero exit status 7: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'spatialreg' had non-zero exit status 8: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'textshaping' had non-zero exit status 9: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'ragg' had non-zero exit status 10: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'pkgdown' had non-zero exit status STEP 23: RUN Rscript --no-save ai-ml-packages.R foreign ggiraph gt highcharter htmlwidgets httr kableExtra kernlab kknn knitr * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_systat.c -o R_systat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfread.c -o Rdbfread.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SASxport.c -o SASxport.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c avl.c -o avl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dbfopen.c -o dbfopen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file-handle.c -o file-handle.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c format.c -o format.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c minitab.c -o minitab.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pfm-read.c -o pfm-read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sfm-read.c -o sfm-read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spss.c -o spss.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stataread.c -o stataread.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-foreign/00new/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreign) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependency 'sf' * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'sf' * removing '/opt/R/4.0.3/lib/R/library/sf' * installing *source* package 'ggiraph' ... ** package 'ggiraph' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c a_color.cpp -o a_color.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c dsvg.cpp -o dsvg.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c fonts.cpp -o fonts.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c tinyxml2.cpp -o tinyxml2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/gdtools/include' -I/usr/local/include -fpic -g -O2 -c utils.cpp -o utils.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ggiraph.so RcppExports.o a_color.o dsvg.o fonts.o tinyxml2.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ggiraph/00new/ggiraph/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ggiraph' finding HTML links ... done annotate_interactive html finding level-2 HTML links ... done annotation_raster_interactive html dsvg html dsvg_view html element_interactive html geom_abline_interactive html geom_bar_interactive html geom_boxplot_interactive html geom_contour_interactive html geom_crossbar_interactive html geom_density_2d_interactive html geom_density_interactive html geom_errorbarh_interactive html geom_histogram_interactive html geom_jitter_interactive html geom_map_interactive html geom_path_interactive html geom_point_interactive html geom_polygon_interactive html geom_quantile_interactive html geom_raster_interactive html geom_rect_interactive html geom_ribbon_interactive html geom_segment_interactive html geom_sf_interactive html geom_smooth_interactive html geom_text_interactive html ggiraph-ggproto html ggiraph html ggiraphOutput html girafe html girafeOutput html girafe_css html girafe_options html guide_bins_interactive html guide_colourbar_interactive html guide_coloursteps_interactive html guide_legend_interactive html interactive_path_grob html interactive_points_grob html interactive_polygon_grob html interactive_polyline_grob html interactive_raster_grob html interactive_rect_grob html interactive_roundrect_grob html interactive_segments_grob html interactive_text_grob html ipar html label_interactive html opts_hover html opts_selection html opts_sizing html opts_toolbar html opts_tooltip html opts_zoom html renderGirafe html renderggiraph html run_girafe_example html scale_alpha_interactive html scale_colour_brewer_interactive html scale_colour_interactive html scale_colour_steps_interactive html scale_gradient_interactive html scale_linetype_interactive html scale_manual_interactive html scale_shape_interactive html scale_size_interactive html scale_viridis_interactive html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggiraph) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'prismatic', 'paletteer' * installing *source* package 'prismatic' ... ** package 'prismatic' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'prismatic' finding HTML links ... done check_color_blindness html clr_alpha html clr_darken html clr_desaturate html clr_grayscale html clr_lighten html clr_mix html clr_negate html clr_rotate html clr_saturate html color html colorblindness html contrast_ratio html is_color html modify_hcl html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prismatic) Making 'packages.html' ... done * installing *source* package 'gt' ... ** package 'gt' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gt' finding HTML links ... done adjust_luminance html as.data.frame.gt_tbl html as_latex html as_raw_html html as_rtf html cell_borders html cell_fill html cell_text html cells_body html cells_column_labels html cells_column_spanners html cells_data html cells_grand_summary html cells_group html cells_row_groups html cells_stub html cells_stubhead html cells_summary html cells_title html cols_align html cols_hide html cols_label html cols_merge html cols_merge_range html cols_merge_uncert html cols_move html cols_move_to_end html cols_move_to_start html cols_width html countrypops html currency html data_color html default_fonts html escape_latex html exibble html extract_summary html fmt html fmt_currency html fmt_date html fmt_datetime html fmt_markdown html fmt_missing html fmt_number html fmt_passthrough html fmt_percent html fmt_scientific html fmt_time html ggplot_image html google_font html grand_summary_rows html gt-options html gt-package html gt html gt_latex_dependencies html gt_output html gt_preview html gtcars html gtsave html html html info_currencies html info_date_style html info_google_fonts html info_locales html info_paletteer html info_time_style html local_image html md html opt_align_table_header html opt_all_caps html opt_css html opt_footnote_marks html opt_row_striping html opt_table_font html opt_table_lines html opt_table_outline html pct html pipe html Rd warning: /tmp/Rtmpk9CF80/R.INSTALL3aba50de88b1/gt/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic pizzaplace html print.gt_tbl html px html random_id html reexports html render_gt html row_group_order html sp500 html summary_rows html sza html tab_footnote html tab_header html tab_options html tab_row_group html tab_source_note html tab_spanner html tab_spanner_delim html tab_stubhead html tab_style html test_image html text_transform html web_image html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gt) Making 'packages.html' ... done * installing *source* package 'paletteer' ... ** package 'paletteer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'paletteer' finding HTML links ... done ggplot2-scales-binned html ggplot2-scales-continuous html ggplot2-scales-discrete html paleteer-c-wrapper html paletteer-package html paletteer_c html paletteer_d html paletteer_dynamic html paletteer_packages html palettes_c_names html palettes_d html palettes_d_names html palettes_dynamic html palettes_dynamic_names html wrapper_c html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paletteer) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'triebeard', 'geometries', 'jsonify', 'rapidjsonr', 'sfheaders', 'urltools', 'httpcode', 'protolite', 'XML', 'fracdiff', 'sf', 'geojsonsf', 'rgeos', 'crul', 'V8', 'geojson', 'jqr', 'rlist', 'rjson', 'gapminder', 'forecast', 'geojsonio' * installing *source* package 'triebeard' ... ** package 'triebeard' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c alter.cpp -o alter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c create.cpp -o create.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c get.cpp -o get.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c greedy_match.cpp -o greedy_match.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c length.cpp -o length.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c longest_match.cpp -o longest_match.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c prefix_match.cpp -o prefix_match.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c str.cpp -o str.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o triebeard.so RcppExports.o alter.o create.o get.o greedy_match.o length.o longest_match.o prefix_match.o str.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-triebeard/00new/triebeard/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'triebeard' finding HTML links ... done alter html getters html greedy_match html longest_match html prefix_match html trie html triebeard html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (triebeard) Making 'packages.html' ... done * installing *source* package 'geometries' ... ** package 'geometries' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c bbox.cpp -o bbox.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c close.cpp -o close.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c columns.cpp -o columns.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c coordinates.cpp -o coordinates.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c geometries.cpp -o geometries.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c lines.cpp -o lines.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c shapes.cpp -o shapes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c tests.cpp -o tests.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c utils.cpp -o utils.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o geometries.so RcppExports.o bbox.o close.o columns.o coordinates.o geometries.o lines.o shapes.o tests.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-geometries/00new/geometries/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'geometries' finding HTML links ... done gm_coordinates html gm_geometries html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geometries) Making 'packages.html' ... done * installing *source* package 'rapidjsonr' ... ** package 'rapidjsonr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rapidjsonr' finding HTML links ... done rapidjsonr-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapidjsonr) Making 'packages.html' ... done * installing *source* package 'httpcode' ... ** package 'httpcode' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'httpcode' finding HTML links ... done cat_for_status html http html httpcode-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpcode) Making 'packages.html' ... done * installing *source* package 'protolite' ... ** package 'protolite' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lprotobuf -lpthread Using libprotoc 3.5.0 from /usr/bin/protoc ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c geobuf.cpp -o geobuf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c geobuf.pb.cc -o geobuf.pb.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c mvt.pb.cc -o mvt.pb.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rexp.pb.cc -o rexp.pb.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c serialize.cpp -o serialize.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ungeobuf.cpp -o ungeobuf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unmvt.cpp -o unmvt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unserialize.cpp -o unserialize.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o protolite.so RcppExports.o geobuf.o geobuf.pb.o init.o mvt.pb.o rexp.pb.o serialize.o ungeobuf.o unmvt.o unserialize.o -lprotobuf -lpthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-protolite/00new/protolite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'protolite' finding HTML links ... done geobuf html Rd warning: /tmp/Rtmp4m4cxv/R.INSTALL3dc072aeea97/protolite/man/geobuf.Rd:21: file link 'toJSON' in package 'jsonlite' does not exist and so has been treated as a topic mapbox html serialize_pb html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protolite) Making 'packages.html' ... done * installing *source* package 'XML' ... ** package 'XML' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /usr/bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... /usr/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -E Minor 9, Patch 7 for 2.9.7 Located parser file -I/usr/include/libxml2/parser.h Checking for 1.8: -I/usr/include/libxml2 Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking libxml/xmlversion.h usability... yes checking libxml/xmlversion.h presence... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding checking for xmlsec1-config... no nodegc default xml-debug default Version has XML_WITH_ZLIB Version has xmlHasFeature() **************************************** Configuration information: Libxml settings libxml include directory: -I/usr/include/libxml2 libxml library directory: -lxml2 -lz -llzma -lm -ldl -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 Link flags: -lxml2 -lz -llzma -lm -ldl -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c DocParse.c -o DocParse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c EventParse.c -o EventParse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c ExpatParse.c -o ExpatParse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c HTMLParse.c -o HTMLParse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c NodeGC.c -o NodeGC.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RSDTD.c -o RSDTD.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RUtils.c -o RUtils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c Rcatalog.c -o Rcatalog.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c Utils.c -o Utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLEventParse.c -o XMLEventParse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLHashTree.c -o XMLHashTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLTree.c -o XMLTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c fixNS.c -o fixNS.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c libxmlFeatures.c -o libxmlFeatures.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c schema.c -o schema.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c xmlsecurity.c -o xmlsecurity.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c xpath.c -o xpath.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -llzma -lm -ldl -lz -lxml2 -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-XML/00new/XML/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'source' from package 'base' in package 'XML' in method for 'xmlAttrsToDataFrame' with signature '"AsIs"': no definition for class "AsIs" in method for 'readKeyValueDB' with signature '"AsIs"': no definition for class "AsIs" in method for 'readSolrDoc' with signature '"AsIs"': no definition for class "AsIs" ** help *** installing help indices converting help for package 'XML' finding HTML links ... done AssignXMLNode html Doctype-class html Doctype html SAXMethods html SAXState-class html XMLAttributes-class html XMLCodeFile-class html XMLInternalDocument html XMLNode-class html addChildren html addNode html addSibling html append.XMLNode html asXMLNode html asXMLTreeNode html catalogResolve html catalogs html coerce html compareXMLDocs html docName html dtdElement html dtdElementValidEntry html dtdIsAttribute html dtdValidElement html ensureNamespace html findXInclude html free html genericSAXHandlers html getChildrenStrings html getEncoding html getHTMLLinks html getLineNumber html getNodeSet html getRelativeURL html getXIncludes html getXMLErrors html isXMLString html length.XMLNode html libxmlVersion html makeClassTemplate html names.XMLNode html newXMLDoc html newXMLNamespace html parseDTD html parseURI html parseXMLAndAdd html print html processXInclude html readHTMLList html readHTMLTable html readKeyValueDB html readSolrDoc html removeXMLNamespaces html replaceNodeWithChildren html saveXML html schema-class html setXMLNamespace html supportsExpat html toHTML html toString html xmlApply html xmlAttributeType html xmlAttrs html xmlChildren html xmlCleanNamespaces html xmlClone html xmlContainsEntity html xmlDOMApply html xmlElementSummary html xmlElementsByTagName html xmlEventHandler html xmlEventParse html xmlGetAttr html xmlHandler html xmlHashTree html xmlName html xmlNamespace html xmlNamespaceDefinitions html xmlNode html xmlOutput html xmlParent html xmlParseDoc html xmlParserContextFunction html xmlRoot html xmlSchemaValidate html xmlSearchNs html xmlSerializeHook html xmlSize html xmlSource html xmlStopParser html xmlStructuredStop html xmlSubset html xmlToDataFrame html xmlToList html xmlToS4 html xmlTree html xmlTreeParse html xmlValue html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XML) Making 'packages.html' ... done * installing *source* package 'fracdiff' ... ** package 'fracdiff' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fdcore.c -o fdcore.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fdgam.c -o fdgam.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fdhess.c -o fdhess.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fdmin.c -o fdmin.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fdsim.c -o fdsim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmult.c -o pmult.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fracdiff.so fdcore.o fdgam.o fdhess.o fdmin.o fdsim.o init.o pmult.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fracdiff/00new/fracdiff/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fracdiff' finding HTML links ... done confint.fracdiff html diffseries html fd-methods html fdGPH html fdSperio html fracdiff html fracdiff.sim html fracdiff.var html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fracdiff) Making 'packages.html' ... done * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'sf' * removing '/opt/R/4.0.3/lib/R/library/sf' * installing *source* package 'rgeos' ... ** package 'rgeos' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 configure: rgeos: 0.5-5 checking for /usr/bin/svnversion... no configure: svn revision: 640 checking for geos-config... no no configure: error: geos-config not found or not executable. ERROR: configuration failed for package 'rgeos' * removing '/opt/R/4.0.3/lib/R/library/rgeos' * installing *source* package 'V8' ... ** package 'V8' successfully unpacked and MD5 sums checked ** using staged installation Found C++14 compiler: g++ Using CXXCPP=g++ -std=gnu++14 -E Using PKG_CFLAGS=-I/usr/include/v8 -I/usr/include/v8-3.14 Using PKG_LIBS=-lv8 -lv8_libplatform -----------------------------[ ANTICONF ]------------------------------- Configuration failed to find the libv8 engine library. Try installing: * deb: libv8-dev or libnode-dev (Debian / Ubuntu) * rpm: v8-devel (Fedora, EPEL) * brew: v8 (OSX) * csw: libv8_dev (Solaris) Alternatively, on Linux (x86_64) or MacOS you can set environment variable: DOWNLOAD_STATIC_LIBV8=1 to automatically download a static version of libv8. To use a custom libv8, set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' ---------------------------[ ERROR MESSAGE ]---------------------------- :1:10: fatal error: v8.h: No such file or directory compilation terminated. ------------------------------------------------------------------------ ERROR: configuration failed for package 'V8' * removing '/opt/R/4.0.3/lib/R/library/V8' * installing *source* package 'jqr' ... ** package 'jqr' successfully unpacked and MD5 sums checked ** using staged installation Using PKG_CFLAGS= Using PKG_LIBS=-ljq --------------------------- [ANTICONF] -------------------------------- Configuration failed because libjq was not found. Try installing: * deb: libjq-dev (Debian, Ubuntu). * rpm: jq-devel (Fedora, EPEL) * csw: libjq_dev (Solaris) * brew: jq (OSX) If is already installed set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- :1:10: fatal error: jq.h: No such file or directory compilation terminated. -------------------------------------------------------------------- ERROR: configuration failed for package 'jqr' * removing '/opt/R/4.0.3/lib/R/library/jqr' * installing *source* package 'rjson' ... ** package 'rjson' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dump.cpp -o dump.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c register.c -o register.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rjson.so dump.o parser.o register.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-rjson/00new/rjson/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rjson' finding HTML links ... done fromJSON html newJSONParser html rjson html toJSON html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjson) Making 'packages.html' ... done * installing *source* package 'gapminder' ... ** package 'gapminder' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gapminder' finding HTML links ... done country_codes html country_colors html gapminder html gapminder_unfiltered html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gapminder) Making 'packages.html' ... done * installing *source* package 'jsonify' ... ** package 'jsonify' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c from_json.cpp -o from_json.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c pretty.cpp -o pretty.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c read_json.cpp -o read_json.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c tests.cpp -o tests.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c to_json.cpp -o to_json.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c validate.cpp -o validate.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o jsonify.so RcppExports.o from_json.o pretty.o read_json.o tests.o to_json.o validate.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-jsonify/00new/jsonify/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'jsonify' finding HTML links ... done as.json html from_json html from_ndjson html minify_json html pretty_json html to_json html to_ndjson html validate_json html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonify) Making 'packages.html' ... done * installing *source* package 'sfheaders' ... ** package 'sfheaders' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c bbox.cpp -o bbox.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c cast.cpp -o cast.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c lists.cpp -o lists.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c sfg_dimension.cpp -o sfg_dimension.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c shapes.cpp -o shapes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c to_df.cpp -o to_df.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c to_sf.cpp -o to_sf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c to_sfc.cpp -o to_sfc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c to_sfg.cpp -o to_sfg.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c utils.cpp -o utils.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sfheaders.so RcppExports.o bbox.o cast.o lists.o sfg_dimension.o shapes.o to_df.o to_sf.o to_sfc.o to_sfg.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sfheaders/00new/sfheaders/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sfheaders' finding HTML links ... done sf_bbox html sf_boxes html sf_cast html sf_line html sf_linestring html sf_mline html sf_mpoly html sf_mpt html sf_multilinestring html sf_multipoint html sf_multipolygon html sf_point html sf_poly html sf_polygon html sf_pt html sf_remove_holes html sf_to_df html sfc_cast html sfc_linestring html sfc_multilinestring html sfc_multipoint html sfc_multipolygon html sfc_point html sfc_polygon html sfc_to_df html sfg_linestring html sfg_multilinestring html sfg_multipoint html sfg_multipolygon html sfg_point html sfg_polygon html sfg_to_df html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sfheaders) Making 'packages.html' ... done * installing *source* package 'urltools' ... ** package 'urltools' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c compose.cpp -o compose.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c credentials.cpp -o credentials.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c encoding.cpp -o encoding.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parameter.cpp -o parameter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parsing.cpp -o parsing.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c puny.cpp -o puny.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c punycode.c -o punycode.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c suffix.cpp -o suffix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o urltools.so RcppExports.o compose.o credentials.o encoding.o parameter.o parsing.o puny.o punycode.o suffix.o utf8.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-urltools/00new/urltools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'urltools' finding HTML links ... done creds html domain html encoder html fragment html host_extract html param_get html param_remove html param_set html parameters html path html port html puny html scheme html suffix_dataset html suffix_extract html suffix_refresh html tld_dataset html tld_extract html tld_refresh html url_compose html url_parse html urltools html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (urltools) Making 'packages.html' ... done ERROR: dependency 'jqr' is not available for package 'geojson' * removing '/opt/R/4.0.3/lib/R/library/geojson' * installing *source* package 'rlist' ... ** package 'rlist' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rlist' finding HTML links ... done List html list.all html list.any html list.append html list.apply html list.cases html list.cbind html list.class html list.clean html list.common html list.count html list.do html list.exclude html list.expand html list.extract html list.filter html list.find html list.findi html list.first html list.flatten html list.group html list.insert html list.is html list.iter html list.join html list.last html list.load html list.map html list.maps html list.mapv html list.match html list.merge html list.names html list.order html list.parse html list.prepend html list.rbind html list.remove html list.reverse html list.sample html list.save html list.search html list.select html list.serialize html list.skip html list.skipWhile html list.sort html list.stack html list.subset html list.table html list.take html list.takeWhile html list.ungroup html list.unserialize html list.unzip html list.update html list.which html list.zip html nyweather html rlist-package html subset.list html tryEval html tryGet html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlist) Making 'packages.html' ... done * installing *source* package 'forecast' ... ** package 'forecast' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcBATS.cpp -o calcBATS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcTBATS.cpp -o calcTBATS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c etsTargetFunction.cpp -o etsTargetFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c etscalc.c -o etscalc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c etspolyroot.c -o etspolyroot.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeBATSMatrices.cpp -o makeBATSMatrices.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeTBATSMatrices.cpp -o makeTBATSMatrices.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c updateMatrices.cpp -o updateMatrices.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c updateTBATSMatrices.cpp -o updateTBATSMatrices.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o forecast.so calcBATS.o calcTBATS.o etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o etspolyroot.o makeBATSMatrices.o makeTBATSMatrices.o registerDynamicSymbol.o updateMatrices.o updateTBATSMatrices.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-forecast/00new/forecast/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices finding HTML links ... converting help for package 'forecast' done Acf html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/Acf.Rd:71: file link 'na.pass' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/Acf.Rd:103: file link 'pacf' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/Acf.Rd:103: file link 'ccf' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/Acf.Rd:132: file link 'pacf' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/Acf.Rd:133: file link 'ccf' in package 'stats' does not exist and so has been treated as a topic Arima html BoxCox html BoxCox.lambda html CV html CVar html accuracy html arfima html arima.errors html arimaorder html auto.arima html autolayer html autoplot.acf html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/autoplot.acf.Rd:82: file link 'na.pass' in package 'stats' does not exist and so has been treated as a topic autoplot.seas html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/autoplot.seas.Rd:61: file link 'plot.stl' in package 'stats' does not exist and so has been treated as a topic autoplot.ts html finding level-2 HTML links ... done baggedModel html bats html bizdays html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/bizdays.Rd:23: file link 'isBizday' in package 'timeDate' does not exist and so has been treated as a topic bld.mbb.bootstrap html checkresiduals html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/checkresiduals.Rd:48: file link 'Box.test' in package 'stats' does not exist and so has been treated as a topic croston html dm.test html dshw html easter html ets html findfrequency html fitted.Arima html forecast-package html forecast.Arima html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/forecast.Arima.Rd:109: file link 'predict.Arima' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/forecast.Arima.Rd:109: file link 'predict.ar' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/forecast.Arima.Rd:131: file link 'predict.Arima' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/forecast.Arima.Rd:132: file link 'predict.ar' in package 'stats' does not exist and so has been treated as a topic forecast.HoltWinters html forecast html forecast.StructTS html forecast.baggedModel html forecast.bats html forecast.ets html forecast.lm html forecast.mlm html forecast.modelAR html forecast.mts html forecast.nnetar html forecast.stl html fourier html gas html geom_forecast html getResponse html gghistogram html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/gghistogram.Rd:26: file link 'nclass.FD' in package 'grDevices' does not exist and so has been treated as a topic gglagplot html ggmonthplot html gold html is.constant html is.ets html is.forecast html ma html meanf html modelAR html monthdays html mstl html msts html na.interp html naive html ndiffs html nnetar html nsdiffs html ocsb.test html plot.Arima html plot.bats html plot.ets html plot.forecast html plot.mforecast html reexports html residuals.forecast html seasadj html seasonal html seasonaldummy html seasonplot html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/seasonplot.Rd:47: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/seasonplot.Rd:59: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic ses html simulate.ets html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/simulate.ets.Rd:98: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/simulate.ets.Rd:132: file link 'rnorm' in package 'stats' does not exist and so has been treated as a topic sindexf html splinef html subset.ts html taylor html tbats html tbats.components html thetaf html tsCV html tsclean html tsdisplay html Rd warning: /tmp/Rtmp8g2I3I/R.INSTALL48de3537b2fe/forecast/man/tsdisplay.Rd:50: file link 'na.pass' in package 'stats' does not exist and so has been treated as a topic tslm html tsoutliers html wineind html woolyrnq html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forecast) Making 'packages.html' ... done * installing *source* package 'geojsonsf' ... ** package 'geojsonsf' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c df_geojson.cpp -o df_geojson.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c geojson_to_sf.cpp -o geojson_to_sf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c geojson_to_wkt.cpp -o geojson_to_wkt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c geojson_wkt.cpp -o geojson_wkt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c read_geojson.cpp -o read_geojson.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/opt/R/4.0.3/lib/R/library/geometries/include' -I'/opt/R/4.0.3/lib/R/library/jsonify/include' -I'/opt/R/4.0.3/lib/R/library/rapidjsonr/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/sfheaders/include' -I/usr/local/include -I../inst/include/ -fpic -g -O2 -c sf_geojson.cpp -o sf_geojson.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o geojsonsf.so RcppExports.o df_geojson.o geojson_to_sf.o geojson_to_wkt.o geojson_wkt.o read_geojson.o sf_geojson.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-geojsonsf/00new/geojsonsf/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'geojsonsf' finding HTML links ... done df_geojson html geo_melbourne html geojson_sf html geojson_sfc html geojson_wkt html sf_geojson html sfc_geojson html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geojsonsf) Making 'packages.html' ... done * installing *source* package 'crul' ... ** package 'crul' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'crul' finding HTML links ... done Async html AsyncQueue html AsyncVaried html HttpClient html HttpRequest html HttpResponse html Paginator html auth html content-types html cookies html crul-options html crul-package html curl-options html curl_verbose html handle html hooks html http-headers html mock html ok html progress html proxies html upload html url_build html verb-DELETE html verb-GET html verb-HEAD html verb-PATCH html verb-POST html verb-PUT html writing-options html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crul) Making 'packages.html' ... done * installing *source* package 'highcharter' ... ** package 'highcharter' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'highcharter' finding HTML links ... done citytemp html citytemp_long html color_classes html color_stops html colorize html data_to_boxplot html data_to_hierarchical html data_to_sankey html datetime_to_timestamp html download_map_data html export_hc html favorite_bars html favorite_pies html get_data_from_map html get_hc_series_from_df html globaltemp html hc_add_annotation html hc_add_dependency html hc_add_dependency_fa html hc_add_event_point html hc_add_series html hc_add_series.character html hc_add_series.data.frame html hc_add_series.density html hc_add_series.forecast html hc_add_series.geo_json html hc_add_series.lm html hc_add_series.numeric html hc_add_series.ts html hc_add_series.xts html hc_add_series_list html hc_add_series_map html hc_add_theme html hc_add_yAxis html hc_annotations html hc_boost html hc_caption html hc_chart html hc_colorAxis html hc_colors html hc_credits html hc_drilldown html hc_elementId html hc_exporting html hc_labels html hc_legend html hc_mapNavigation html hc_motion html hc_navigator html hc_pane html hc_plotOptions html hc_rangeSelector html hc_responsive html hc_rm_series html hc_scrollbar html hc_series html hc_size html hc_subtitle html hc_theme html hc_theme_538 html hc_theme_alone html hc_theme_bloom html hc_theme_chalk html hc_theme_darkunica html hc_theme_db html hc_theme_economist html hc_theme_elementary html hc_theme_ffx html hc_theme_flat html hc_theme_flatdark html hc_theme_ft html hc_theme_ggplot2 html hc_theme_google html hc_theme_gridlight html hc_theme_handdrawn html hc_theme_hcrt html hc_theme_merge html hc_theme_monokai html hc_theme_null html hc_theme_sandsignika html hc_theme_smpl html hc_theme_sparkline html hc_theme_superheroes html hc_theme_tufte html hc_title html hc_tooltip html hc_xAxis html hc_yAxis html hc_zAxis html hcaes html hcaes_string html hcboxplot html hchart html hchart.survfit html hciconarray html hcmap html hcparcords html hcspark html hctreemap html hctreemap2 html hex_to_rgba html highchart html highchart2 html highchartOutput html highcharter-exports html highcharter html highcharts_demo html hw_grid html is.hexcolor html is.highchart html list_parse html mutate_mapping html pokemon html random_id html renderHighchart html stars html str_to_id html tooltip_chart html tooltip_table html unemployment html uscountygeojson html usgeojson html vaccines html weather html worldgeojson html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (highcharter) Making 'packages.html' ... done ERROR: dependencies 'sf', 'rgeos', 'V8', 'geojson', 'jqr' are not available for package 'geojsonio' * removing '/opt/R/4.0.3/lib/R/library/geojsonio' Updating HTML index of packages in '.Library' Making 'packages.html' ... done System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo * installing *source* package 'htmlwidgets' ... ** package 'htmlwidgets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'htmlwidgets' finding HTML links ... done JS html JSEvals html createWidget html Rd warning: /tmp/RtmpsVkfEq/R.INSTALL4b20c0ceb74/htmlwidgets/man/createWidget.Rd:25: file link 'toJSON' in package 'jsonlite' does not exist and so has been treated as a topic getDependency html htmlwidgets-package html htmlwidgets-shiny html onRender html onStaticRenderComplete html Rd warning: /tmp/RtmpsVkfEq/R.INSTALL4b20c0ceb74/htmlwidgets/man/onStaticRenderComplete.Rd:15: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic prependContent html Rd warning: /tmp/RtmpsVkfEq/R.INSTALL4b20c0ceb74/htmlwidgets/man/prependContent.Rd:15: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic saveWidget html scaffoldWidget html setWidgetIdSeed html sizingPolicy html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'httr' ... ** package 'httr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'httr' finding HTML links ... done BROWSE html DELETE html GET html HEAD html PATCH html POST html PUT html RETRY html Token-class html VERB html add_headers html authenticate html cache_info html config html content html content_type html cookies html get_callback html guess_media html handle html handle_pool html has_content html headers html hmac_sha1 html http_condition html http_error html http_status html http_type html httr-package html httr_dr html httr_options html init_oauth1.0 html init_oauth2.0 html insensitive html jwt_signature html modify_url html oauth1.0_token html oauth2.0_token html oauth_app html oauth_callback html oauth_endpoint html oauth_endpoints html oauth_exchanger html oauth_listener html oauth_service_token html oauth_signature html parse_http_date html parse_media html parse_url html progress html response html revoke_all html set_config html set_cookies html sha1_hash html sign_oauth html status_code html stop_for_status html timeout html upload_file html use_proxy html user_agent html verbose html with_config html write_disk html write_function html write_stream html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'svglite', 'formattable', 'sparkline' * installing *source* package 'svglite' ... ** package 'svglite' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I'/opt/R/4.0.3/lib/R/library/systemfonts/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I'/opt/R/4.0.3/lib/R/library/systemfonts/include' -I/usr/local/include -fpic -g -O2 -c devSVG.cpp -o devSVG.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o svglite.so cpp11.o devSVG.o -lpng -lz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-svglite/00new/svglite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'svglite' finding HTML links ... done create_svgz html editSVG html font_face html htmlSVG html reexports html stringSVG html svglite html svgstring html xmlSVG html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svglite) Making 'packages.html' ... done * installing *source* package 'formattable' ... ** package 'formattable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'formattable' finding HTML links ... done accounting html area html as.datatable html as.datatable.formattable html as.htmlwidget html as.htmlwidget.formattable html color_bar html color_text html color_tile html comma html csscolor html currency html digits html format_table html formattable-package html formattable.Date html formattable.POSIXct html formattable.POSIXlt html formattable html formattable.data.frame html formattable.default html formattable.factor html formattable.logical html formattable.numeric html formattableOutput html formatter html gradient html icontext html is.formattable html normalize html normalize_bar html percent html prefix html proportion html proportion_bar html qrank html renderFormattable html scientific html style html suffix html vmap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (formattable) Making 'packages.html' ... done * installing *source* package 'sparkline' ... ** package 'sparkline' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparkline' finding HTML links ... done sparkline-shiny html sparkline html spk_add_deps html spk_chr html spk_composite html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) Making 'packages.html' ... done * installing *source* package 'kableExtra' ... ** package 'kableExtra' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'kableExtra' finding HTML links ... done add_footnote html add_header_above html add_indent html as_image html auto_index html cell_spec html collapse_rows html column_spec html footnote html footnote_marker_number html graphics_helpers html group_rows html header_separate html html_dependency_bsTable html html_dependency_kePrint html html_dependency_lightable html kableExtra-package html kableExtra_latex_packages html kable_as_image html kable_as_xml html kable_classic html kable_styling html kbl html Rd warning: /tmp/RtmpvESl2i/R.INSTALL4d7177f03ca1/kableExtra/man/kbl.Rd:70: file link 'opts_current' in package 'knitr' does not exist and so has been treated as a topic landscape html linebreak html listify_args html magic_mirror html make_inline_plot html reexports html remove_column html rmd_format html row_spec html save_kable html scroll_box html spec_angle html spec_boxplot html spec_color html spec_font_size html spec_hist html spec_image html spec_plot html spec_pointrange html spec_popover html spec_tooltip html usepackage_latex html xml_as_kable html xtable2kable html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kableExtra) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'kernlab' ... ** package 'kernlab' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brweight.cpp -o brweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ctable.cpp -o ctable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cweight.cpp -o cweight.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dbreakpt.c -o dbreakpt.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dcauchy.c -o dcauchy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dgpnrm.c -o dgpnrm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dgpstep.c -o dgpstep.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dprecond.c -o dprecond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dprsrch.c -o dprsrch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dspcg.c -o dspcg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtron.c -o dtron.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtrpcg.c -o dtrpcg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dtrqsol.c -o dtrqsol.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c esa.cpp -o esa.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expdecayweight.cpp -o expdecayweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c inductionsort.cpp -o inductionsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c kspectrumweight.cpp -o kspectrumweight.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lcp.cpp -o lcp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c misc.c -o misc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c msufsort.cpp -o msufsort.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c solvebqp.c -o solvebqp.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stringk.c -o stringk.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stringkernel.cpp -o stringkernel.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c svm.cpp -o svm.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wkasailcp.cpp -o wkasailcp.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wmsufsort.cpp -o wmsufsort.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-kernlab/00new/kernlab/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'kernlab' finding HTML links ... done as.kernelMatrix html couple html csi-class html csi html dots html gausspr-class html gausspr html inchol-class html inchol html income html inlearn html ipop-class html ipop html kcca-class html kcca html kernel-class html kernelMatrix html kfa-class html kfa html kha-class html kha html kkmeans html kmmd-class html kmmd html kpca-class html kpca html kqr-class html kqr html ksvm-class html ksvm html lssvm-class html lssvm html musk html onlearn-class html onlearn html plot html prc-class html predict.gausspr html predict.kqr html predict.ksvm html promotergene html ranking-class html ranking html reuters html rvm-class html rvm html sigest html spam html specc-class html specc html spirals html stringdot html ticdata html vm-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernlab) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'kknn' ... ** package 'kknn' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dm.c -o dm.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o kknn.so dm.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-kknn/00new/kknn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'kknn' finding HTML links ... done contr.dummy html glass html ionosphere html kknn-deprecated html kknn-package html kknn html Rd warning: /tmp/RtmpH5UhwP/R.INSTALL4eb61a382016/kknn/man/kknn.Rd:70: file link 'simulation' in package 'kknn' does not exist and so has been treated as a topic miete html specClust html finding level-2 HTML links ... done train.kknn html Rd warning: /tmp/RtmpH5UhwP/R.INSTALL4eb61a382016/kknn/man/train.kknn.Rd:62: file link 'simulation' in package 'kknn' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kknn) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'miniUI', 'R.methodsS3', 'R.oo', 'R.utils', 'manipulateWidget', 'filehash', 'sysfonts', 'showtextdb', 'textshaping', 'R.cache', 'formatR', 'rgl', 'tikzDevice', 'reticulate', 'JuliaCall', 'gifski', 'showtext', 'ragg', 'styler' * installing *source* package 'miniUI' ... ** package 'miniUI' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'miniUI' finding HTML links ... done miniButtonBlock html finding level-2 HTML links ... done miniContentPanel html Rd warning: /tmp/RtmpRBXkwS/R.INSTALL4f3b734e9761/miniUI/man/miniContentPanel.Rd:13: file link 'fillCol' in package 'shiny' does not exist and so has been treated as a topic miniPage html miniTabstripPanel html miniTitleBar html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miniUI) Making 'packages.html' ... done * installing *source* package 'R.methodsS3' ... ** package 'R.methodsS3' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'R.methodsS3' finding HTML links ... done Non-documented_objects html R.KEYWORDS html R.methodsS3-package html findDispatchMethodsS3 html getDispatchMethodS3 html getGenericS3 html getMethodS3 html isGenericS3 html isGenericS4 html pkgStartupMessage html Rd warning: /tmp/RtmppVPRtv/R.INSTALL4fad4fd1f9eb/R.methodsS3/man/pkgStartupMessage.Rd:17: file link 'packageStartupMessage' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmppVPRtv/R.INSTALL4fad4fd1f9eb/R.methodsS3/man/pkgStartupMessage.Rd:27: file link 'packageStartupMessage' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmppVPRtv/R.INSTALL4fad4fd1f9eb/R.methodsS3/man/pkgStartupMessage.Rd:40: file link 'packageStartupMessage' in package 'base' does not exist and so has been treated as a topic setGenericS3 html setMethodS3 html throw html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.methodsS3) Making 'packages.html' ... done * installing *source* package 'filehash' ... ** package 'filehash' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lockfile.c -o lockfile.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c readKeyMap.c -o readKeyMap.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o filehash.so hash.o init.o lockfile.o readKeyMap.o sha1.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-filehash/00new/filehash/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'filehash' finding HTML links ... done createQ html createS html db2env html dbInit html dump html filehash-class html filehashFormats html filehashOption html push html queue-class html stack-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filehash) Making 'packages.html' ... done * installing *source* package 'sysfonts' ... ** package 'sysfonts' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for pkg-config... /usr/bin/pkg-config checking whether pkg-config could find zlib... yes checking whether pkg-config could find libpng... yes checking whether pkg-config could find freetype2... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c font_name.c -o font_name.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c register_routines.c -o register_routines.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c sysfonts.c -o sysfonts.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sysfonts.so font_name.o register_routines.o sysfonts.o -lfreetype -lpng16 -lz -lz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sysfonts/00new/sysfonts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sysfonts' finding HTML links ... done font_add html font_add_google html font_families html font_families_google html font_files html font_info_google html font_paths html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sysfonts) Making 'packages.html' ... done * installing *source* package 'textshaping' ... ** package 'textshaping' successfully unpacked and MD5 sums checked ** using staged installation Package fribidi was not found in the pkg-config search path. Perhaps you should add the directory containing `fribidi.pc' to the PKG_CONFIG_PATH environment variable Package 'fribidi', required by 'virtual:world', not found Using PKG_CFLAGS= Using PKG_LIBS=-lfreetype -lharfbuzz -lfribidi -lpng --------------------------- [ANTICONF] -------------------------------- Configuration failed to find the harfbuzz freetype2 fribidi library. Try installing: * deb: libharfbuzz-dev libfribidi-dev (Debian, Ubuntu, etc) * rpm: harfbuzz-devel fribidi-devel (Fedora, EPEL) * csw: libharfbuzz_dev libfribidi_dev (Solaris) * brew: harfbuzz fribidi (OSX) If harfbuzz freetype2 fribidi is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a harfbuzz freetype2 fribidi.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- :1:10: fatal error: hb-ft.h: No such file or directory compilation terminated. -------------------------------------------------------------------- ERROR: configuration failed for package 'textshaping' * removing '/opt/R/4.0.3/lib/R/library/textshaping' * installing *source* package 'formatR' ... ** package 'formatR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'formatR' finding HTML links ... done tidy_app html tidy_dir html tidy_eval html tidy_source html usage html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (formatR) Making 'packages.html' ... done * installing *source* package 'reticulate' ... ** package 'reticulate' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c event_loop.cpp -o event_loop.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c libpython.cpp -o libpython.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c output.cpp -o output.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c python.cpp -o python.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c readline.cpp -o readline.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c signals.cpp -o signals.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o reticulate.so RcppExports.o event_loop.o libpython.o output.o python.o readline.o signals.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-reticulate/00new/reticulate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reticulate' finding HTML links ... done PyClass html array_reshape html as.character.python.builtin.bytes html conda-tools html configure_environment html dict html eng_python html import html install_miniconda html install_python html iterate html miniconda_path html miniconda_update html np_array html py html py_available html py_call html py_capture_output html py_config html py_config_error_message html py_del_attr html py_del_item html py_discover_config html py_ellipsis html py_eval html py_exe html py_func html py_function_custom_scaffold html py_function_wrapper html py_get_attr html py_get_item html py_has_attr html py_help html py_help_handler html py_id html py_install html py_is_null_xptr html py_iterator html py_last_error html py_len html py_list_attributes html py_main_thread_func html py_module_available html py_none html py_run html py_save_object html py_set_attr html py_set_item html py_set_seed html py_str html py_suppress_warnings html py_to_r_wrapper html py_unicode html py_version html py_versions_windows html r-py-conversion html register_class_filter html register_help_topics html register_module_help_handler html register_suppress_warnings_handler html repl_python html reticulate html source_python html tuple html use_python html virtualenv-tools html with-as-operator html with.python.builtin.object html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reticulate) Making 'packages.html' ... done * installing *source* package 'gifski' ... ** package 'gifski' successfully unpacked and MD5 sums checked ** using staged installation ./configure: line 5: cargo: command not found ------------------ RUST COMPILER NOT FOUND -------------------- Cargo was not found on the PATH. Please install cargo / rustc: - yum install cargo (Fedora/CentOS) - apt-get install cargo (Debian/Ubuntu) - brew install rust (MacOS) Alternatively install Rust from: --------------------------------------------------------------- ERROR: configuration failed for package 'gifski' * removing '/opt/R/4.0.3/lib/R/library/gifski' * installing *source* package 'knitr' ... ** package 'knitr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'knitr' finding HTML links ... done Sweave2knitr html all_labels html all_patterns html asis_output html cache_engines html chunk_hook html clean_cache html combine_words html finding level-2 HTML links ... done current_input html dep_auto html dep_prev html engine_output html fig_chunk html fig_path html hook_animation html hook_document html hook_plot html image_uri html imgur_upload html include_graphics html include_url html inline_expr html is_low_change html kable html knit html knit2html html knit2pandoc html knit2pdf html knit2wp html knit_child html knit_code html knit_engines html knit_exit html knit_expand html knit_filter html knit_global html knit_hooks html knit_meta html knit_params html knit_params_yaml html knit_patterns html knit_print html knit_rd html knit_theme html knit_watch html knitr-package html load_cache html opts_chunk html opts_hooks html opts_knit html opts_template html output_hooks html output_type html pandoc html pat_fun html plot_crop html rand_seed html raw_block html raw_output html read_chunk html read_rforge html rocco html rst2pdf html set_alias html set_header html set_parent html sew html spin html spin_child html stitch html vignette_engines html wrap_rmd html write_bib html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) Making 'packages.html' ... done * installing *source* package 'R.oo' ... ** package 'R.oo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'R.oo' finding HTML links ... done 000.makeObjectFinalizer html ASCII html BasicObject html Class html DOLLAR.BasicObject html DOLLAR.Class html DOLLAR.Object html DOLLARLT_-.BasicObject html DOLLARLT_-.Class html DOLLARLT_-.Object html Exception html Interface html InternalErrorException html Non-documented_objects html Object html Package html R.oo-package html RccViolationException html Rdoc html RdocException html abort html Rd warning: /tmp/RtmpqQZ1Oc/R.INSTALL54ac123ff5ce/R.oo/man/abort.Rd:78: file link 'invokeRestart' in package 'base' does not exist and so has been treated as a topic argsToString.Class html argsToString.Rdoc html as.character.BasicObject html as.character.Class html as.character.Exception html as.character.Interface html as.character.Object html as.character.Package html as.character.RccViolationException html as.character.RdocException html attach.BasicObject html attach.Object html attachLocally.Object html charToInt html check.Rdoc html clearCache.Object html clearLookupCache.Object html clone.Object html compile.Rdoc html compileRdoc html createManPath.Rdoc html createName.Rdoc html declaration.Rdoc html detach.BasicObject html detach.Object html dimension html equals.BasicObject html equals.Object html equals html escapeRdFilename.Rdoc html extend.BasicObject html extend.Interface html extend.Object html extend html finalize.Object html forName.Class html getAuthor.Package html Rd warning: /tmp/RtmpqQZ1Oc/R.INSTALL54ac123ff5ce/R.oo/man/getAuthor.Package.Rd:28: file link 'format.person' in package 'utils' does not exist and so has been treated as a topic getBundle.Package html getBundlePackages.Package html getCalls.Exception html getChangeLog.Package html getClassS4Usage.Rdoc html getClasses.Package html getConstructorS3 html getContents.Package html getContribUrl.Package html getDataPath.Package html getDate.Package html getDescription.Package html getDescriptionFile.Package html getDetails.Class html getDevelUrl.Package html getDocPath.Package html getEnvironment.Object html getEnvironment.Package html getExamplePath.Package html getFieldModifiers.Object html getFields.BasicObject html getFields.Class html getFields.Interface html getFields.Object html getHowToCite.Package html getInstantiationTime.BasicObject html getInstantiationTime.Object html getInternalAddress.Object html getKeywords.Rdoc html getKnownSubclasses.Class html getKnownSubclasses.classRepresentation html getLastException.Exception html getLicense.Package html getMaintainer.Package html Rd warning: /tmp/RtmpqQZ1Oc/R.INSTALL54ac123ff5ce/R.oo/man/getMaintainer.Package.Rd:28: file link 'format.person' in package 'utils' does not exist and so has been treated as a topic getManPath.Rdoc html getMessage.Exception html getMessage.InternalErrorException html getMethods.Class html getName.Class html getName.Package html getName.environment html getNameFormat.Rdoc html getPackage.Class html getPackage.InternalErrorException html getPackageNameOf.Rdoc html getPath.Package html getPosition.Package html getRccUrl.RccViolationException html getRdDeclaration.Class html getRdDeclaration.classRepresentation html getRdHierarchy.Class html getRdHierarchy.classRepresentation html getRdMethods.Class html getRdMethods.classRepresentation html getRdTitle.Rdoc html getSource.RdocException html getStackTrace.Exception html getStackTraceString.Exception html getStaticInstance.Class html getStaticInstance.Object html getSuperclasses.Class html getSuperclasses.classRepresentation html getTitle.Package html getUrl.Package html getUsage.Rdoc html getVersion.Package html getWhen.Exception html hasField.BasicObject html hasField.Object html hashCode.BasicObject html hashCode.Object html hashCode html hierarchy.Rdoc html intToChar html isAbstract.Class html isBeingCreated.Class html isDeprecated.Class html isKeyword.Rdoc html isLoaded.Package html isOlderThan.Package html isPrivate.Class html isProtected.Class html isPublic.Class html isReferable.BasicObject html isReferable.Object html isStatic.Class html isVisible.Rdoc html ll.Object html ll.Package html ll html Rd warning: /tmp/RtmpqQZ1Oc/R.INSTALL54ac123ff5ce/R.oo/man/ll.Rd:94: file link 'ls.str' in package 'utils' does not exist and so has been treated as a topic load.Object html load.Package html methodsInheritedFrom.Rdoc html newInstance.BasicObject html newInstance.Class html newInstance.Object html novirtual.Object html objectSize.BasicObject html objectSize.Object html objectSize html objectSize.environment html print.BasicObject html print.Class html print.Exception html print.Interface html print.Object html printStackTrace.Exception html save.Object html setConstructorS3 html setManPath.Rdoc html setNameFormat.Rdoc html showChangeLog.Package html showContents.Package html showDescriptionFile.Package html showHowToCite.Package html startupMessage.Package html staticCode.Object html throw.Exception html throw html throw.error html trim html typeOfClass html unload.Package html uses.Interface html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.oo) Making 'packages.html' ... done * installing *source* package 'manipulateWidget' ... ** package 'manipulateWidget' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'manipulateWidget' finding HTML links ... done MWController-class html combineWidgets-shiny html combineWidgets html compareOptions html knit_print.MWController html manipulateWidget-package html manipulateWidget html mwCheckbox html mwCheckboxGroup html mwDate html mwDateRange html mwGroup html mwModule html mwNumeric html mwPassword html mwRadio html mwSelect html mwSelectize html mwSharedValue html mwSlider html mwText html staticPlot html summary.MWController html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (manipulateWidget) Making 'packages.html' ... done * installing *source* package 'showtextdb' ... ** package 'showtextdb' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'showtextdb' finding HTML links ... done font_install html google_fonts html load_showtext_fonts html source_han html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (showtextdb) Making 'packages.html' ... done * installing *source* package 'tikzDevice' ... ** package 'tikzDevice' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tikzDevice.c -o tikzDevice.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tikzDevice.so init.o tikzDevice.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tikzDevice/00new/tikzDevice/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tikzDevice' finding HTML links ... done anyMultibyteUTF8Characters html getLatexStrWidth html gridToDevice html sanitizeTexString html setTikzDefaults html tikz html tikzAnnotate html tikzCompilerInfo html tikzDevice-package html tikzTest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : tikzDevice: No appropriate LaTeX compiler could be found. Access to LaTeX is required in order for the TikZ device to produce output. The following places were tested for a valid LaTeX compiler: the global option: tikzLatex the environment variable: R_LATEXCMD the environment variable: R_PDFLATEXCMD the global option: latexcmd the PATH using the command: pdflatex the PATH using the command: latex the PATH using the command: /usr/texbin/pdflatex If you have a working LaTeX compiler, try one of the following solutions: Set the path to your compiler as the value of either latexcmd or tikzLatex in .Rprofile using options(). Set the path to your compiler as the value of either R_LATEXCMD or R_PDFLATEXCMD in .Renviron. Ensure the folder containing your compiler is included in PATH. ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : tikzDevice: No appropriate LaTeX compiler could be found. Access to LaTeX is required in order for the TikZ device to produce output. The following places were tested for a valid LaTeX compiler: the global option: tikzLatex the environment variable: R_LATEXCMD the environment variable: R_PDFLATEXCMD the global option: latexcmd the PATH using the command: pdflatex the PATH using the command: latex the PATH using the command: /usr/texbin/pdflatex If you have a working LaTeX compiler, try one of the following solutions: Set the path to your compiler as the value of either latexcmd or tikzLatex in .Rprofile using options(). Set the path to your compiler as the value of either R_LATEXCMD or R_PDFLATEXCMD in .Renviron. Ensure the folder containing your compiler is included in PATH. ** testing if installed package keeps a record of temporary installation path * DONE (tikzDevice) Making 'packages.html' ... done * installing *source* package 'JuliaCall' ... ** package 'JuliaCall' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c JuliaCall.cpp -o JuliaCall.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c libjulia.cpp -o libjulia.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o JuliaCall.so JuliaCall.o RcppExports.o libjulia.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-JuliaCall/00new/JuliaCall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'JuliaCall' finding HTML links ... done JuliaCall html JuliaObject html JuliaObjectFields html autowrap html call html eng_juliacall html grapes-greater-than-J-grapes html install_julia html julia_assign html julia_command html julia_console html julia_eval html julia_exists html julia_help html julia_markdown_setup html julia_notebook_setup html julia_package html julia_pkg_wrap html julia_setup html julia_source html plotsViewer html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JuliaCall) Making 'packages.html' ... done ERROR: dependency 'textshaping' is not available for package 'ragg' * removing '/opt/R/4.0.3/lib/R/library/ragg' * installing *source* package 'R.utils' ... ** package 'R.utils' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function warnings to warnings.default, which was defined in environment base. ** help *** installing help indices converting help for package 'R.utils' finding HTML links ... done Arguments html Assert html FileProgressBar html GString-class html Java html LComments html MultiVerbose html Non-documented_objects html NullVerbose html Options html ProgressBar html R.utils-package html Settings html SmartComments html Sys.readlink2 html System html TextStatusBar html TimeoutException html finding level-2 HTML links ... done VComments html Verbose html addFinalizerToLast html as.character.GString html as.character.Options html as.character.ProgressBar html as.character.Verbose html as.character.binmode html as.double.Verbose html as.list.MultiVerbose html as.list.Options html as.logical.Verbose html asByte.Java html asInt.Java html asLong.Java html asShort.Java html attachLocally.list html callHooks html callHooks.function html capitalize html capture.Verbose html captureOutput html cat.Verbose html check.Assert html cleanup.FileProgressBar html cmdArgs html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/cmdArgs.Rd:53: file link 'as.numeric' in package 'base' does not exist and so has been treated as a topic cmdArgsCall html colClasses html commandArgs html compile.SmartComments html compressFile html compressPDF html convertComment.SmartComments html convertComment.VComments html copyDirectory html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/copyDirectory.Rd:40: file link 'file.copy' in package 'base' does not exist and so has been treated as a topic copyFile html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/copyFile.Rd:40: file link 'file.copy' in package 'base' does not exist and so has been treated as a topic countLines html createFileAtomically html createLink html createWindowsShortcut html currentTimeMillis.System html dataFrame html detachPackage html dimNALT_- html displayCode html doCall html downloadFile.character html draw.density html eget html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/eget.Rd:77: file link 'cmdArg' in package 'R.utils' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/eget.Rd:78: file link 'mget' in package 'base' does not exist and so has been treated as a topic egsub html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/egsub.Rd:25: file link 'gsub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/egsub.Rd:27: file link 'gsub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/egsub.Rd:29: file link 'gsub' in package 'base' does not exist and so has been treated as a topic enter.Verbose html env html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/env.Rd:24: file link 'evalq' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/env.Rd:26: file link 'new.env' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/env.Rd:59: file link 'new.env' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/env.Rd:59: file link 'evalq' in package 'base' does not exist and so has been treated as a topic equals.Options html equals.Verbose html evaluate.GString html evaluate.Verbose html exit.Verbose html extract.array html file.info2 html fileAccess html filePath html finalizeSession html findFiles html findGhostscript.System html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/findGhostscript.System.Rd:31: file link 'R_GSCMD' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/findGhostscript.System.Rd:34: file link 'R_GSCMD' in package 'base' does not exist and so has been treated as a topic findGraphicsDevice.System html findSettings.Settings html findSourceTraceback html flush.TextStatusBar html gcDLLs html gcat html getAbsolutePath html getBarString.ProgressBar html getBuiltinDate.GString html getBuiltinDatetime.GString html getBuiltinHostname.GString html getBuiltinOs.GString html getBuiltinPid.GString html getBuiltinRhome.GString html getBuiltinRversion.GString html getBuiltinTime.GString html getBuiltinUsername.GString html getCharacters.Arguments html getDoubles.Arguments html getEnvironment.Arguments html getFilename.Arguments html getHostname.System html getIndices.Arguments html getInstanceOf.Arguments html getIntegers.Arguments html getLabel.TextStatusBar html getLeaves.Options html getLoadedPathname.Settings html getLogicals.Arguments html getMessage.TimeoutException html getNumerics.Arguments html getOption.Options html getParent html getRaw.GString html getReadablePathname.Arguments html getReadablePathnames.Arguments html getRegularExpression.Arguments html getRelativePath html getThreshold.Verbose html getTimestampFormat.Verbose html getUsername.System html getVariableValue.GString html getVector.Arguments html getVerbose.Arguments html getWritablePathname.Arguments html gstring html hasOption.Options html hasUrlProtocol html header.Verbose html hpaste html hsize html inAnyInterval.numeric html increase.ProgressBar html inheritsFrom.Assert html insert html installPackages html intToBin html intervalsToSeq.matrix html isAbsolutePath html isDirectory html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/isDirectory.Rd:43: file link 'file_test' in package 'utils' does not exist and so has been treated as a topic isDone.ProgressBar html isEof.connection html isFile html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/isFile.Rd:43: file link 'file_test' in package 'utils' does not exist and so has been treated as a topic isMatrix.Assert html isModified.Settings html isOn.NullVerbose html isOn.Verbose html isOpen.character html isPackageInstalled html isPackageLoaded html isReplicated html isScalar.Assert html isSingle html isUrl html isVector.Assert html isVisible.NullVerbose html isVisible.Verbose html isZero html lastModified html less.Verbose html listDirectory html loadAnywhere.Settings html loadObject html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/loadObject.Rd:47: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic loadToEnv html mapToIntervals.numeric html mergeIntervals.numeric html mkdirs html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/mkdirs.Rd:41: file link 'dir.create' in package 'base' does not exist and so has been treated as a topic more.Verbose html mout html moveInSearchPath html mpager html names.Options html nbrOfOptions.Options html newline.TextStatusBar html newline.Verbose html nullfile html off.Verbose html on.Verbose html onGarbageCollect html onSessionExit html openBrowser.System html parse.GString html parse.SmartComments html parseDebian.System html patchCode html popBackupFile html popMessage.TextStatusBar html popTemporaryFile html print.GString html print.Verbose html printf html printf.Verbose html promptAndSave.Settings html pushBackupFile html pushState.Verbose html pushTemporaryFile html queryRCmdCheck html readBinFragments html readByte.Java html readInt.Java html readRdHelp html readShort.Java html readTable html readTableIndex html readUTF.Java html readWindowsShellLink html readWindowsShortcut html reassignInPackage html removeDirectory html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/removeDirectory.Rd:40: file link 'file.remove' in package 'base' does not exist and so has been treated as a topic renameFile html resample html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/resample.Rd:29: file link 'sample.int' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/resample.Rd:39: file link 'sample.int' in package 'base' does not exist and so has been treated as a topic reset.ProgressBar html reset.SmartComments html reset.VComments html ruler.Verbose html saveAnywhere.Settings html saveObject html Rd warning: /tmp/Rtmp0lvHrK/R.INSTALL57482c8e2781/R.utils/man/saveObject.Rd:46: file link 'saveRDS' in package 'base' does not exist and so has been treated 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(cached) none needed checking for libpng-config... yes configure: using libpng-config configure: using libpng dynamic linkage checking for X... libraries , headers checking for XAllocClassHint... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking GL/glu.h usability... yes checking GL/glu.h presence... yes checking for GL/glu.h... yes checking for glEnd in -lGL... yes checking for glEnd... yes checking for gluErrorString in -lGLU... yes checking for gluErrorString... yes checking for pkg-config... yes configure: using Freetype and FTGL configure: creating ./config.status config.status: creating R/noOpenGL.R config.status: creating src/useNULL/Makevars config.status: creating src/Makevars ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c ABCLineSet.cpp -o 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-Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c rglmath.cpp -o rglmath.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c rglview.cpp -o rglview.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c scene.cpp -o scene.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c select.cpp -o select.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c subscene.cpp -o subscene.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c win32gui.cpp -o win32gui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c win32lib.cpp -o win32lib.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c x11gui.cpp -o x11gui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext -I/usr/local/include -fpic -g -O2 -c x11lib.cpp -o x11lib.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -L/usr/lib64 -lpng16 -lX11 -lfreetype -L/opt/R/4.0.3/lib/R/lib -lR cp -Rp OpenGL useNULL && \ cp -p *.c *.h *.cpp useNULL/ && \ cd useNULL && \ /opt/R/4.0.3/lib/R/bin/R CMD SHLIB -o useNULL.so *.cpp *.c && \ cd .. && \ mkdir -p ../inst/useNULL && \ mv useNULL/useNULL.so ../inst/useNULL/rgl.so && \ rm useNULL/*.cpp useNULL/*.c useNULL/*.h useNULL/OpenGL/* make[1]: Entering directory '/tmp/Rtmpqfv81m/R.INSTALL57ba48c208da/rgl/src/useNULL' g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c ABCLineSet.cpp -o ABCLineSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Background.cpp -o Background.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c ClipPlane.cpp -o ClipPlane.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Color.cpp -o Color.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Disposable.cpp -o Disposable.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Light.cpp -o Light.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c LineSet.cpp -o LineSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c LineStripSet.cpp -o LineStripSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Material.cpp -o Material.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c NULLgui.cpp -o NULLgui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c PlaneSet.cpp -o PlaneSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c PointSet.cpp -o PointSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c PrimitiveSet.cpp -o PrimitiveSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c RenderContext.cpp -o RenderContext.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Shape.cpp -o Shape.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c SphereMesh.cpp -o SphereMesh.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c SphereSet.cpp -o SphereSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c SpriteSet.cpp -o SpriteSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c String.cpp -o String.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Surface.cpp -o Surface.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c TextSet.cpp -o TextSet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Texture.cpp -o Texture.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c Viewpoint.cpp -o Viewpoint.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c assert.cpp -o assert.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c callbacks.cpp -o callbacks.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c device.cpp -o device.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c devicemanager.cpp -o devicemanager.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c fps.cpp -o fps.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c ftgl.cpp -o ftgl.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c geom.cpp -o geom.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c glErrors.cpp -o glErrors.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c glgui.cpp -o glgui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c gui.cpp -o gui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c par3d.cpp -o par3d.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c pixmap.cpp -o pixmap.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c platform.cpp -o platform.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c render.cpp -o render.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c rglmath.cpp -o rglmath.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c rglview.cpp -o rglview.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c scene.cpp -o scene.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c select.cpp -o select.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c subscene.cpp -o subscene.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c win32gui.cpp -o win32gui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c win32lib.cpp -o win32lib.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c x11gui.cpp -o x11gui.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fpic -g -O2 -c x11lib.cpp -o x11lib.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gl2ps.c -o gl2ps.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DRGL_NO_OPENGL -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pretty.c -o pretty.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o useNULL.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o gl2ps.o pretty.o -L/usr/lib64 -lpng16 -L/opt/R/4.0.3/lib/R/lib -lR make[1]: Leaving directory '/tmp/Rtmpqfv81m/R.INSTALL57ba48c208da/rgl/src/useNULL' installing to /opt/R/4.0.3/lib/R/library/00LOCK-rgl/00new/rgl/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rgl' finding HTML links ... done 3dobjects html GramSchmidt html abclines html addNormals html ageControl html ageSetter html all.equal.mesh3d html arc3d html arrow3d html as.mesh3d.ashape3d html as.mesh3d.default html as.mesh3d.rglId html as.triangles3d html asRow html aspect3d html attributes html axes3d html bbox html bg html bgplot3d html callbacks html check3d html clipMesh3d html clipplaneControl html contourLines3d html cube3d html cylinder3d html decorate3d html drape3d html elementId2Prefix html ellipse3d html extrude3d html facing3d html figWidth html grid3d html identify3d html import html in_pkgdown_example html light html makeDependency html material html matrices html merge.mesh3d html mergeVertices html mesh3d html mfrow3d html observer3d html open3d html par3d html par3dinterp html par3dinterpControl html pch3d html persp3d html persp3d.deldir html persp3d.function html persp3d.tri html planes html play3d html playwidget html finding level-2 HTML links ... done plot3d html plot3d.formula html plot3d.lm html plotmath3d html polygon3d html postscript html primitive html propertyControl html propertySetter html r3d html readSTL html rgl-internal html rgl-package html rgl.Sweave html rgl.attrib.info html rgl.bringtotop html rgl.fns html rgl.init html rgl.open html rgl.pixels html rgl.select html rgl.texts html rgl.useNULL html rgl.user2window html rglExtrafonts html rglIds html rglMouse html rglShared html rglToLattice html rglwidget html scene html scene3d html sceneChange html select3d html selectpoints3d html setGraphicsDelay html setUserShaders html setupKnitr html shade3d html shadow3d html shapelist3d html shiny html shinyGetPar3d html show2d html snapshot html spheres html spin3d html sprites html subdivision3d html subscene3d html subsceneInfo html surface html surface3d html texts html thigmophobe3d html tkpar3dsave html tkrgl html tkspin3d html tkspinControl html toggleWidget html triangulate html turn3d html vertexControl html viewpoint html webGLcontrols html writeASY html writeOBJ html writePLY html writeWebGL html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. ** testing if installed package keeps a record of temporary installation path * DONE (rgl) Making 'packages.html' ... done * installing *source* package 'showtext' ... ** package 'showtext' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for pkg-config... /usr/bin/pkg-config checking whether pkg-config could find zlib... yes checking whether pkg-config could find libpng... yes checking whether pkg-config could find freetype2... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c array.c -o array.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c cairodev.c -o cairodev.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c devfuns.c -o devfuns.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c fonts.c -o fonts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c outline.c -o outline.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c raster.c -o raster.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c register_routines.c -o register_routines.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c showtext.c -o showtext.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libpng16 -I/usr/local/include -fpic -g -O2 -c util.c -o util.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o showtext.so array.o cairodev.o devfuns.o fonts.o outline.o raster.o register_routines.o showtext.o utf8.o util.o -lfreetype -lpng16 -lz -lz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-showtext/00new/showtext/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'showtext' finding HTML links ... done showtext_auto html Rd warning: /tmp/RtmpYEJBpV/R.INSTALL5bd62038d0d6/showtext/man/showtext_auto.Rd:19: file link 'recordPlot' in package 'grDevices' does not exist and so has been treated as a topic showtext_begin html showtext_end html showtext_opts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (showtext) Making 'packages.html' ... done * installing *source* package 'R.cache' ... ** package 'R.cache' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'R.cache' finding HTML links ... done 000.baseLoad html Non-documented_objects html Options_used_by_R.cache html R.cache-package html addMemoization html clearCache html evalWithMemoization html findCache html generateCache html getCachePath html getCacheRootPath html getChecksum html loadCache html memoizedCall html readCacheHeader html saveCache html setCachePath html setCacheRootPath html setupCacheRootPath html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.cache) Making 'packages.html' ... done * installing *source* package 'styler' ... ** package 'styler' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'styler' finding HTML links ... done add_cache_block html add_id_and_short html add_line_col_to_wrapped_expr html add_roxygen_mask html add_spaces_or_newlines html add_stylerignore html add_token_terminal html alignment_col1_is_named html alignment_drop_comments html alignment_ensure_no_closing_brace html alignment_ensure_trailing_comma html alignment_has_correct_spacing_around_comma html alignment_has_correct_spacing_around_eq_sub html alignment_serialize html alignment_serialize_column html alignment_serialize_line html apply_ref_indention html apply_ref_indention_one html apply_stylerignore html apply_transformers html assert_filetype html assert_text html assert_tokens html assert_transformers html bind_with_child html cache_activate html cache_by_expression html cache_clear html cache_find_block html cache_find_path html cache_info html cache_is_activated html cache_make_key html cache_more_specs html cache_write html caching html calls_sys html can_verify_roundtrip html catch_style_file_output html choose_indention html combine_children html communicate_summary html communicate_warning html compute_indent_indices html compute_parse_data_nested html construct_out html construct_tree html construct_vertical html contains_else_expr_that_needs_braces html context_to_terminals html context_towards_terminals html convert_newlines_to_linebreaks html copy_to_tempdir html create_node_from_nested html create_node_from_nested_root html create_pos_ids html create_style_guide html create_tokens html create_tree html default_style_guide_attributes html dir_without_. html drop_cached_children html emulate_rd html enhance_mapping_special html enrich_terminals html ensure_correct_txt html ensure_last_n_empty html ensure_valid_pd html env_add_stylerignore html env_current html expressions_are_identical html extend_if_comment html extract_terminals html find_blank_lines_to_next_block html find_blank_lines_to_next_expr html find_block_id html find_dont_seqs html find_line_break_position_in_multiline_call html find_pos_id_to_keep html find_start_pos_id html find_tokens_to_update html fix_quotes html flatten_operators html flatten_operators_one html flatten_pd html generate_test_samples html get_addins_style_transformer_name html get_engine_pattern html get_knitr_pattern html get_parse_data html has_crlf_as_first_line_sep html hash_standardize html identify_raw_chunks html identify_start_to_stop_of_roxygen_examples_from_text html if_for_while_part_requires_braces html initialize_attributes html invalid_utf8 html is_cached html is_code_chunk_header_or_xaringan html is_insufficiently_parsed_string html is_shebang html is_tilde_expr html lookup_new_special html lookup_tokens html make_transformer html map_filetype_to_pattern html match_stop_to_start html math_token_spacing html n_times_faster_with_cache html needs_indention html needs_indention_one html needs_rd_emulation html nest_parse_data html next_non_comment html next_terminal html option_read html parse_roxygen html parse_safely html parse_transform_serialize_r html parse_transform_serialize_r_block html parse_transform_serialize_roxygen html parser_version_set html pd_is html pd_is_multi_line html post_parse_roxygen html prettify_any html prettify_pkg html print.vertical html rds_to_version html read_utf8 html read_utf8_bare html reindention html relocate_eq_assign html relocate_eq_assign_nest html relocate_eq_assign_one html remove_dont_mask html remove_roxygen_header html rep_char html roxygen_remove_extra_brace html save_after_styling_is_active html scope_normalize html separate_chunks html serialize_parse_data_flattened html set_and_assert_arg_filetype html set_arg_paths html set_arg_write_tree html set_line_break_after_opening_if_call_is_multi_line html set_line_break_around_curly_curly html set_line_break_before_curly_opening html set_line_break_if_call_is_multi_line html set_multi_line html set_regex_indention html set_space_around_op html set_space_between_eq_sub_and_comma html set_space_between_levels html set_spaces html set_style_transformers html set_unindention_child html specify_transformers_drop html split_roxygen_segments html start_comments_with_space html style_active_pkg html style_dir html style_file html style_guides html style_pkg html style_roxygen_code_example html style_roxygen_code_example_one html style_roxygen_code_example_segment html style_roxygen_example_snippet html style_selection html style_space_around_math_token html style_space_around_token html style_text html style_text_without_curly_curly html styler-package html styler_addins html stylerignore html stylerignore_consolidate_col html test_collection html test_dry html test_transformer html test_transformers_drop html testthat_file html text_to_flat_pd html tidyverse_style html token_is_on_aligned_line html tokenize html transform_and_check html transform_code html transform_file html transform_files html transform_mixed html transform_utf8 html transform_utf8_one html transformers_drop html try_transform_as_r_file html two_cols_match html unindent_child html unindent_fun_dec html update_indention html update_indention_ref html update_newlines html validate_new_pos_ids html verify_roundtrip html visit html visit_one html wrap_else_multiline_curly html wrap_expr_in_curly html wrap_expr_in_expr html wrap_if_else_while_for_fun_multi_line_in_curly html wrap_multiline_curly html wrap_subexpr_in_curly html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (styler) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done There were 11 warnings (use warnings() to see them) STEP 24: RUN Rscript --no-save ai-ml-packages.R lattice leaflet lubridate magrittr Matrix mlbench nlme nnet openxlsx packrat parsnip * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c threeDplot.c -o threeDplot.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lattice/00new/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lattice) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'leaflet.providers', 'sf', 'rgdal', 'rgeos', 'RJSONIO' * installing *source* package 'leaflet.providers' ... ** package 'leaflet.providers' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'leaflet.providers' finding HTML links ... done get_providers html providers_default html providers_loaded html use_providers html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet.providers) Making 'packages.html' ... done * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'sf' * removing '/opt/R/4.0.3/lib/R/library/sf' * installing *source* package 'rgdal' ... ** package 'rgdal' successfully unpacked and MD5 sums checked ** using staged installation configure: R_HOME: /opt/R/4.0.3/lib/R configure: CC: gcc configure: CXX: g++ -std=gnu++11 configure: CFLAGS: -g -O2 configure: CPPFLAGS: -I/usr/local/include configure: CXXFLAGS: -g -O2 configure: LDFLAGS: -L/usr/local/lib configure: LDFLAGS: -L/usr/local/lib configure: CXX11 is: g++, CXX11STD is: -std=gnu++11 configure: CXX is: g++ -std=gnu++11 configure: C++11 support available configure: rgdal: 1.5-23 checking for /usr/bin/svnversion... no configure: svn revision: 1121 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'rgdal' * removing '/opt/R/4.0.3/lib/R/library/rgdal' * installing *source* package 'rgeos' ... ** package 'rgeos' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 configure: rgeos: 0.5-5 checking for /usr/bin/svnversion... no configure: svn revision: 640 checking for geos-config... no no configure: error: geos-config not found or not executable. ERROR: configuration failed for package 'rgeos' * removing '/opt/R/4.0.3/lib/R/library/rgeos' * installing *source* package 'RJSONIO' ... ** package 'RJSONIO' successfully unpacked and MD5 sums checked ** using staged installation Trying to find libjson.h header file checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed USE_LOCAL = "" Minor Version: 6 Using local libjson code. Copying files from src/libjson/Source /tmp/Rtmps0VWVw/R.INSTALL63ab4cc1a9a1/RJSONIO JSONAllocator.cpp JSONChildren.cpp JSONDebug.cpp JSONIterators.cpp JSONMemory.cpp JSONNode.cpp JSONNode_Mutex.cpp JSONPreparse.cpp JSONStream.cpp JSONValidator.cpp JSONWorker.cpp JSONWriter.cpp internalJSONNode.cpp libjson.cpp configure: creating ./config.status config.status: creating src/Makevars config.status: creating tools/cleanup ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c ConvertUTF.c -o ConvertUTF.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONAllocator.cpp -o JSONAllocator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONChildren.cpp -o JSONChildren.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONDebug.cpp -o JSONDebug.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONIterators.cpp -o JSONIterators.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONMemory.cpp -o JSONMemory.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONNode.cpp -o JSONNode.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONNode_Mutex.cpp -o JSONNode_Mutex.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONPreparse.cpp -o JSONPreparse.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONStream.cpp -o JSONStream.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONValidator.cpp -o JSONValidator.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONWorker.cpp -o JSONWorker.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSONWriter.cpp -o JSONWriter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c JSON_parser.c -o JSON_parser.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c RJSON.c -o RJSON.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c internalJSONNode.cpp -o internalJSONNode.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c libjson.cpp -o libjson.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c rlibjson.c -o rlibjson.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_VALIDATE -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1 -DJSON_ISO_STRICT -I/usr/local/include -fpic -g -O2 -c rparser.c -o rparser.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RJSONIO.so ConvertUTF.o JSONAllocator.o JSONChildren.o JSONDebug.o JSONIterators.o JSONMemory.o JSONNode.o JSONNode_Mutex.o JSONPreparse.o JSONStream.o JSONValidator.o JSONWorker.o JSONWriter.o JSON_parser.o RJSON.o init.o internalJSONNode.o libjson.o rlibjson.o rparser.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-RJSONIO/00new/RJSONIO/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RJSONIO' finding HTML links ... done JSON_T_NULL html asJSVars html basicJSONHandler html fromJSON html isValidJSON html readJSONStream html toJSON html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RJSONIO) Making 'packages.html' ... done * installing *source* package 'leaflet' ... ** package 'leaflet' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'leaflet' finding HTML links ... done aaa-test-viztest html addAwesomeMarkers html addGraticule html addLayersControl html addLegend html addMapPane html addMeasure html addMiniMap html addProviderTiles html addRasterImage html finding level-2 HTML links ... done addScaleBar html addSimpleGraticule html addTerminator html atlStorms2005 html awesomeIconList html awesomeIcons html breweries91 html colorNumeric html deprecated html derivePoints html derivePolygons html dispatch html easyButton html evalFormula html expandLimits html expandLimitsBbox html filterNULL html gadmCHE html getMapData html groupOptions html iconList html icons html leaflet-imports html Rd warning: /tmp/RtmpGwwNiz/R.INSTALL65ff859f763/leaflet/man/leaflet-imports.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic leaflet html leafletDependencies html leafletProxy html leafletSizingPolicy html makeAwesomeIcon html makeIcon html map-layers html map-methods html map-options html map-shiny html Rd warning: /tmp/RtmpGwwNiz/R.INSTALL65ff859f763/leaflet/man/map-shiny.Rd:16: file link 'shinyWidgetOutput' in package 'htmlwidgets' does not exist and so has been treated as a topic mapOptions html previewColors html providers html remove html safeLabel html showGroup html validateCoords html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'lubridate' ... ** package 'lubridate' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cctz/src/zone_info_source.cc -o cctz/src/zone_info_source.o ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o ./cctz/src/zone_info_source.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c update.cpp -o update.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c datetime.c -o datetime.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c period.c -o period.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I./cctz/src/ -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tparse.c -o tparse.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lubridate.so RcppExports.o update.o utils.o datetime.o period.o tparse.o -L. -lcctz -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lubridate/00new/lubridate/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lubridate' finding HTML links ... done DateCoercion html DateTimeUpdate html Deprecated html Duration-class html Interval-class html Period-class html Timespan-class html am html as.duration html as.interval html as.period html as_date html cyclic_encoding html date html date_decimal html date_utils html day html days_in_month html decimal_date html dst html duration html fit_to_timeline html force_tz html format_ISO8601 html format_ISO8601_precision_check html guess_formats html hidden_aliases html hms html hour html interval html is.difftime html is.instant html is.timespan html lakers html leap_year html local_time html lubridate-package html make_datetime html make_difftime html minute html month html mplus html now html origin html parse_date_time html period html period_to_seconds html posix_utils html pretty_dates html quarter html reclass_date html reclass_timespan html reexports html rollbackward html round_date html second html stamp html time_length html timespan html tz html week html with_tz html within-interval html year html ymd html ymd_hms html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (lubridate) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Attaching package: 'lubridate' The following objects are masked from 'package:base': date, intersect, setdiff, union * installing *source* package 'magrittr' ... ** package 'magrittr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'magrittr' finding HTML links ... done aliases html compound html debug_fseq html debug_pipe html exposition html faq-pipe-gender html freduce html fseq html functions html magrittr-package html pipe html pipe_eager_lexical html print.fseq html tee html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Csparse.c -o Csparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c TMatrix_as.c -o TMatrix_as.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Tsparse.c -o Tsparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c Mutils.c -o Mutils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c chm_common.c -o chm_common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c cs.c -o cs.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c cs_utils.c -o cs_utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dense.c -o dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dppMatrix.c -o dppMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dspMatrix.c -o dspMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c factorizations.c -o factorizations.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c ldense.c -o ldense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c sparseQR.c -o sparseQR.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fpic -g -O2 -c abIndex.c -o abIndex.o make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD/Lib' make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD/Source' make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD/Source' make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/SuiteSparse_config' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/SuiteSparse_config' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD/Lib' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD' ( cd Source ; make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD/Source' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd.c -o colamd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd.o colamd_l.o make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD' ( cd Source ; make -f "/opt/R/4.0.3/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD/Source' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o make[2]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/AMD' make[1]: Entering directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/SuiteSparse_config' gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[1]: Leaving directory '/tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/src/SuiteSparse_config' gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Matrix/00new/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html LU-class html Matrix-class html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur html SparseM-conv html Subassign-methods html TsparseMatrix-class html USCounties html Xtrct-methods html abIndex-class html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/abIndex-class.Rd:80: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic abIseq html all-methods html all.equal-methods html atomicVector-class html band html bandSparse html bdiag html boolean-matprod html cBind html chol html chol2inv-methods html colSums html compMatrix-class html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-def html dtpMatrix-class html dtrMatrix-class html expand html expm html externalFormats html facmul html forceSymmetric html formatSparseM html generalMatrix-class html graph2T html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/graph2T.Rd:60: file link 'graph.adjacency' in package 'igraph' does not exist and so has been treated as a topic Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/graph2T.Rd:61: file link 'get.adjacency' in package 'igraph' does not exist and so has been treated as a topic image-methods html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/image-methods.Rd:53: file link 'panel.levelplot.raster' in package 'lattice' does not exist and so has been treated as a topic Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/image-methods.Rd:81: file link 'get.gpar' in package 'grid' does not exist and so has been treated as a topic indMatrix-class html index-class html invPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-classes html lsyMatrix-class html ltrMatrix-class html lu html mat2triplet html matrix-products html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/matrix-products.Rd:404: file link 'tcrossprod' in package 'base' does not exist and so has been treated as a topic nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero html norm html nsparseMatrix-classes html nsyMatrix-class html ntrMatrix-class html number-class html pMatrix-class html printSpMatrix html qr-methods html rankMatrix html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/rankMatrix.Rd:87: file link 'qr' in package 'Matrix' does not exist and so has been treated as a topic rcond html rep2abI html replValue-class html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html symmetricMatrix-class html symmpart html triangularMatrix-class html uniqTsparse html unpack html unused-classes html updown html wrld_1deg html Rd warning: /tmp/RtmptqRSdp/R.INSTALL67b131032180/Matrix/man/wrld_1deg.Rd:33: file link 'Sobj_SpatialGrid' in package 'maptools' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Matrix) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'mlbench' ... ** package 'mlbench' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c waveform.c -o waveform.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mlbench.so init.o waveform.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mlbench/00new/mlbench/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mlbench' finding HTML links ... done BostonHousing html BreastCancer html DNA html Glass html HouseVotes84 html Ionosphere html LetterRecognition html Ozone html PimaIndiansDiabetes html Satellite html Servo html Shuttle html Sonar html Soybean html Vehicle html Vowel html Zoo html as.data.frame.mlbench html bayesclass html mlbench.2dnormals html mlbench.cassini html mlbench.circle html mlbench.cuboids html mlbench.friedman1 html mlbench.friedman2 html mlbench.friedman3 html mlbench.hypercube html mlbench.peak html mlbench.ringnorm html mlbench.shapes html mlbench.simplex html mlbench.smiley html mlbench.spirals html mlbench.threenorm html mlbench.twonorm html mlbench.waveform html mlbench.xor html plot.mlbench html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlbench) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c chol.f -o chol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c corStruct.c -o corStruct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gnls.c -o gnls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c matrix.c -o matrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlOptimizer.c -o nlOptimizer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlme.c -o nlme.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlmefit.c -o nlmefit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pdMat.c -o pdMat.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pythag.c -o pythag.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rs.f -o rs.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-nlme/00new/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varConstProp html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlme) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nnet.c -o nnet.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o nnet.so nnet.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-nnet/00new/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nnet) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'openxlsx' ... ** package 'openxlsx' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helper_functions.cpp -o helper_functions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c load_workbook.cpp -o load_workbook.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c openxlsx_init.c -o openxlsx_init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c read_workbook.cpp -o read_workbook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_data.cpp -o write_data.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_file.cpp -o write_file.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c write_file_2.cpp -o write_file_2.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o openxlsx.so RcppExports.o helper_functions.o load_workbook.o openxlsx_init.o read_workbook.o write_data.o write_file.o write_file_2.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-openxlsx/00new/openxlsx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'openxlsx' finding HTML links ... done addCreator html addFilter html addStyle html addWorksheet html all.equal html cloneWorksheet html conditionalFormat html conditionalFormatting html convertFromExcelRef html convertToDate html convertToDateTime html copyWorkbook html createComment html createNamedRegion html createStyle html createWorkbook html dataValidation html deleteData html freezePane html getBaseFont html getCellRefs html getCreators html getDateOrigin html getNamedRegions html getSheetNames html getStyles html getTables html groupColumns html groupRows html insertImage html insertPlot html int2col html loadWorkbook html makeHyperlinkString html mergeCells html modifyBaseFont html names html openXL html openxlsx html pageBreak html pageSetup html protectWorkbook html protectWorksheet html read.xlsx html readWorkbook html removeCellMerge html removeColWidths html removeComment html removeFilter html removeRowHeights html removeTable html removeWorksheet html renameWorksheet html replaceStyle html saveWorkbook html setColWidths html setFooter html setHeader html setHeaderFooter html setLastModifiedBy html setRowHeights html sheetVisibility html sheetVisible html sheets html showGridLines html ungroupColumns html ungroupRows html worksheetOrder html write.xlsx html writeComment html writeData html writeDataTable html writeFormula html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openxlsx) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'packrat' ... ** package 'packrat' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'packrat' finding HTML links ... done appDependencies html bitbucket_pwd html bitbucket_user html bundle html clean html disable html gitlab_pwd html gitlab_user html init html install html install_local html lockfile-metadata html Rd warning: /tmp/Rtmpbis1zW/R.INSTALL6c5e7843c17b/packrat/man/lockfile-metadata.Rd:18: file link 'package_version' in package 'base' does not exist and so has been treated as a topic packify html packrat-external html packrat-mode html packrat-options html packrat-resources html packrat html repos_create html repos_upload html repository-management html restore html search_path html snapshot html snapshotImpl html status html unbundle html unused_packages html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (packrat) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning: dependency 'liquidSVM' is not available also installing the dependencies 'tensorflow', 'tfruns', 'zeallot', 'blob', 'config', 'dbplyr', 'forge', 'r2d3', 'plotmo', 'TeachingDemos', 'keras', 'xgboost', 'sparklyr', 'earth', 'randomForest', 'ranger' * installing *source* package 'zeallot' ... ** package 'zeallot' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'zeallot' finding HTML links ... done destructure-methods html destructure html operator html zeallot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zeallot) Making 'packages.html' ... done * installing *source* package 'blob' ... ** package 'blob' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'blob' finding HTML links ... done as.blob html blob html vec_cast.blob html vec_ptype2.blob html Rd warning: /tmp/Rtmp8jSve8/R.INSTALL6d4210486e2/blob/man/vec_ptype2.blob.Rd:18: file link 'stop_incompatible_type' in package 'vctrs' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8jSve8/R.INSTALL6d4210486e2/blob/man/vec_ptype2.blob.Rd:22: file link 'stop_incompatible_type' in package 'vctrs' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blob) Making 'packages.html' ... done * installing *source* package 'config' ... ** package 'config' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'config' finding HTML links ... done config html get html is_active html merge html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (config) Making 'packages.html' ... done * installing *source* package 'forge' ... ** package 'forge' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'forge' finding HTML links ... done cast html certify html pipe html Rd warning: /tmp/RtmpJFGPSm/R.INSTALL6e2645beb1b/forge/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forge) Making 'packages.html' ... done * installing *source* package 'r2d3' ... ** package 'r2d3' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'r2d3' finding HTML links ... done as_d3_data html d3-shiny html default_sizing html html_dependencies_d3 html r2d3 html reexports html save_d3_html html save_d3_png html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (r2d3) Making 'packages.html' ... done * installing *source* package 'TeachingDemos' ... ** package 'TeachingDemos' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TeachingDemos' finding HTML links ... done HWidentify html Pvalue.sim html R2txt html SensSpec.demo html TeachingDemos-package html TkApprox html TkBuildDist html TkListView html TkPredict html TkSpline html USCrimes html bct html cal html ccc html char2seed html chisq.detail html ci.examp html clipplot html clt.examp html cnvrt.coords html coin.faces html col2grey html correct html cortest html dice html digits html dots html dynIdentify html evap html faces html faces2 html fagan html gp.open html hpd html ineq html lattice.demo html ldsgrowth html loess.demo html mle.demo html ms.polygram html mysymbols html normtest html outliers html pairs2 html panel.mysymbols html petals html plot.rgl.coin html plot2script html power.examp html put.points.demo html rgl.Map html roc.demo html rotate.cloud html run.cor.examp html run.hist.demo html shadowtext html sigma.test html simfun html slider html sliderv html spread.labs html squishplot html steps html stork html subplot html tkBrush html tkexamp html tree.demo html triplot html updateusr html vis.binom html vis.boxcox html vis.test html z.test html zoomplot html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TeachingDemos) Making 'packages.html' ... done * installing *source* package 'xgboost' ... ** package 'xgboost' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking Backtrace lib... checking for backtrace in -lexecinfo... no checking endian... configure: creating ./config.status config.status: creating src/Makevars ** libs Makevars:17: -DXGBOOST_STRICT_R_MODE=1 Makevars:17: -DDMLC_LOG_BEFORE_THROW=0 Makevars:17: -DDMLC_ENABLE_STD_THREAD=1 Makevars:17: -DDMLC_DISABLE_STDIN=1 Makevars:17: -DDMLC_LOG_CUSTOMIZE=1 Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1 Makevars:17: -DRABIT_CUSTOMIZE_MSG_ g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c xgboost_R.cc -o xgboost_R.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c xgboost_custom.cc -o xgboost_custom.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fpic -g -O2 -c xgboost_assert.c -o xgboost_assert.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/engine.cc -o rabit/src/engine.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/c_api.cc -o rabit/src/c_api.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/allreduce_base.cc -o rabit/src/allreduce_base.o g++ -std=gnu++14 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o ./amalgamation/xgboost-all0.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine.o ./rabit/src/c_api.o ./rabit/src/allreduce_base.o -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xgboost/00new/xgboost/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xgboost' finding HTML links ... done a-compatibility-note-for-saveRDS-save html Rd warning: /tmp/RtmpGf8P1g/R.INSTALL6f7c732767fb/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:5: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpGf8P1g/R.INSTALL6f7c732767fb/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:8: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpGf8P1g/R.INSTALL6f7c732767fb/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:10: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpGf8P1g/R.INSTALL6f7c732767fb/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:12: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic agaricus.test html agaricus.train html callbacks html cb.cv.predict html cb.early.stop html cb.evaluation.log html cb.gblinear.history html cb.print.evaluation html cb.reset.parameters html cb.save.model html dim.xgb.DMatrix html dimnames.xgb.DMatrix html getinfo html normalize html predict.xgb.Booster html prepare.ggplot.shap.data html print.xgb.Booster html print.xgb.DMatrix html print.xgb.cv html setinfo html slice.xgb.DMatrix html xgb.Booster.complete html xgb.DMatrix html xgb.DMatrix.save html xgb.attr html xgb.config html xgb.create.features html xgb.cv html xgb.dump html xgb.gblinear.history html xgb.importance html xgb.load html xgb.load.raw html xgb.model.dt.tree html xgb.parameters html xgb.plot.deepness html xgb.plot.importance html xgb.plot.multi.trees html xgb.plot.shap html xgb.plot.shap.summary html xgb.plot.tree html xgb.save html xgb.save.raw html xgb.serialize html xgb.shap.data html xgb.train html xgb.unserialize html xgbConfig html xgboost-deprecated html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xgboost) Making 'packages.html' ... done * installing *source* package 'randomForest' ... ** package 'randomForest' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c classTree.c -o classTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c regTree.c -o regTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c regrf.c -o regrf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rf.c -o rf.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rfsub.f -o rfsub.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rfutils.c -o rfutils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o randomForest.so classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-randomForest/00new/randomForest/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'randomForest' finding HTML links ... done MDSplot html classCenter html combine html getTree html grow html importance html imports85 html margin html na.roughfix html outlier html partialPlot html plot.randomForest html predict.randomForest html randomForest html rfImpute html rfNews html rfcv html treesize html tuneRF html varImpPlot html varUsed html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randomForest) Making 'packages.html' ... done * installing *source* package 'ranger' ... ** package 'ranger' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Data.cpp -o Data.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c DataSparse.cpp -o DataSparse.o In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:397, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:377, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:31, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Array >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Array > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, Eigen::Array > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Array >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Forest.cpp -o Forest.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestClassification.cpp -o ForestClassification.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestProbability.cpp -o ForestProbability.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestRegression.cpp -o ForestRegression.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c ForestSurvival.cpp -o ForestSurvival.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:397, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:377, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:31, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:59: required from 'Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:52:94: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:59: required from 'Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:52:94: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:90:53: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' /opt/R/4.0.3/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:59: required from 'Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:52:94: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c Tree.cpp -o Tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeClassification.cpp -o TreeClassification.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeProbability.cpp -o TreeProbability.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeRegression.cpp -o TreeRegression.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c TreeSurvival.cpp -o TreeSurvival.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c rangerCpp.cpp -o rangerCpp.o In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:397, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:377, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:242:7: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:31, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:370, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Core:439, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigenForward.h:30, from /opt/R/4.0.3/lib/R/library/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /opt/R/4.0.3/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Array >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Array > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, Eigen::Array > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Array >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]' DataSparse.h:70:24: required from here /opt/R/4.0.3/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c utility.cpp -o utility.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DR_BUILD -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c utilityRcpp.cpp -o utilityRcpp.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ranger.so AAA_check_cpp11.o Data.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o rangerCpp.o utility.o utilityRcpp.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ranger/00new/ranger/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ranger' finding HTML links ... done csrf html getTerminalNodeIDs html holdoutRF html importance.ranger html importance_pvalues html parse.formula html predict.ranger html predict.ranger.forest html predictions.ranger html predictions.ranger.prediction html print.ranger html print.ranger.forest html print.ranger.prediction html ranger html timepoints.ranger html timepoints.ranger.prediction html treeInfo html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ranger) Making 'packages.html' ... done * installing *source* package 'parsnip' ... ** package 'parsnip' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'parsnip' finding HTML links ... done C5.0_train html add_on_exports html add_rowindex html augment.model_fit html boost_tree html check_empty_ellipse html contr_one_hot html control_parsnip html convert_stan_interval html decision_tree html descriptors html eval_args html fit html get_model_env html glance.model_fit html has_multi_predict html keras_mlp html linear_reg html logistic_reg html make_call html make_classes html mars html maybe_matrix html min_cols html mlp html model_db html model_fit html model_printer html model_spec html multi_predict html multinom_reg html nearest_neighbor html null_model html nullmodel html other_predict html parsnip_addin html predict.model_fit html prepare_data html rand_forest html reexports html repair_call html req_pkgs html rpart_train html set_args html set_engine html set_new_model html show_call html show_engines html stan_conf_int html surv_reg html svm_poly html svm_rbf html tidy._elnet html tidy.model_fit html tidy.nullmodel html translate html type_sum.model_spec html varying html varying_args.model_spec html xgb_train html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parsnip) Making 'packages.html' ... done * installing *source* package 'tfruns' ... ** package 'tfruns' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tfruns' finding HTML links ... done as_run_dir html clean_runs html compare_runs html copy_run html flags html finding level-2 HTML links ... done is_run_active html latest_run html ls_runs html reexports html run_dir html run_info html save_run_comparison html save_run_view html training_run html tuning_run html unique_run_dir html view_run html view_run_metrics html write_run_data html write_run_metadata html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tfruns) Making 'packages.html' ... done * installing *source* package 'dbplyr' ... ** package 'dbplyr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dbplyr' finding HTML links ... done arrange.tbl_lazy html finding level-2 HTML links ... done backend-access html backend-hana html backend-hive html backend-impala html backend-mssql html backend-mysql html backend-odbc html backend-oracle html backend-postgres html backend-redshift html backend-snowflake html backend-sqlite html backend-teradata html build_sql html collapse.tbl_sql html complete.tbl_lazy html copy_to.src_sql html count.tbl_lazy html db-io html db-misc html db-quote html db-sql html dbplyr-package html dbplyr-slice html dbplyr_uncount html distinct.tbl_lazy html do.tbl_sql html escape html expand.tbl_lazy html fill.tbl_lazy html filter.tbl_lazy html group_by.tbl_lazy html head.tbl_lazy html ident html ident_q html in_schema html intersect.tbl_lazy html join.tbl_sql html lahman html lazy_ops html memdb_frame html mutate.tbl_lazy html named_commas html nycflights13 html partial_eval html pivot_longer.tbl_lazy html pivot_wider.tbl_lazy html pull.tbl_sql html reexports html remote_name html replace_na.tbl_lazy html select.tbl_lazy html simulate_dbi html sql html sql_build html sql_expr html sql_quote html sql_variant html src_dbi html src_sql html summarise.tbl_lazy html tbl.src_dbi html tbl_lazy html tbl_sql html testing html translate_sql html win_over html window_order html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dbplyr) Making 'packages.html' ... done * installing *source* package 'plotmo' ... ** package 'plotmo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotmo' finding HTML links ... done plot_gbm html plot_glmnet html plotmo html plotmo.misc html plotres html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotmo) Making 'packages.html' ... done * installing *source* package 'tensorflow' ... ** package 'tensorflow' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tensorflow' finding HTML links ... done all_dims html evaluate html export_savedmodel html install_tensorflow html install_tensorflow_extras html parse_arguments html finding level-2 HTML links ... done parse_flags html reexports html set_random_seed html shape html sub-.tensorflow.tensor html tensorboard html tensorflow html tf html tf_config html tf_extract_opts html tf_function html tf_gpu_configured html tf_probability html tfe_enable_eager_execution html train html train_and_evaluate html use_compat html use_session_with_seed html view_savedmodel html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tensorflow) Making 'packages.html' ... done * installing *source* package 'sparklyr' ... ** package 'sparklyr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparklyr' finding HTML links ... done DBISparkResult-class html arrow_enabled_object html checkpoint_directory html collect html collect_from_rds html compile_package_jars html connection_config html connection_is_open html connection_spark_shinyapp html copy_to html copy_to.spark_connection html distinct html download_scalac html dplyr_hof html ensure html fill html filter html find_scalac html ft_binarizer html ft_bucketizer html ft_chisq_selector html ft_count_vectorizer html ft_dct html ft_elementwise_product html ft_feature_hasher html ft_hashing_tf html ft_idf html ft_imputer html ft_index_to_string html ft_interaction html ft_lsh html ft_lsh_utils html ft_max_abs_scaler html ft_min_max_scaler html ft_ngram html ft_normalizer html ft_one_hot_encoder html ft_one_hot_encoder_estimator html ft_pca html ft_polynomial_expansion html ft_quantile_discretizer html ft_r_formula html ft_regex_tokenizer html ft_robust_scaler html ft_standard_scaler html ft_stop_words_remover html ft_string_indexer html ft_tokenizer html ft_vector_assembler html ft_vector_indexer html ft_vector_slicer html ft_word2vec html full_join html get_spark_sql_catalog_implementation html grapes-greater-than-grapes html hive_context_config html hof_aggregate html hof_array_sort html hof_exists html hof_filter html hof_forall html hof_map_filter html hof_map_zip_with html hof_transform html hof_transform_keys html hof_transform_values html hof_zip_with html inner_join html invoke html invoke_method html jobj_class html jobj_set_param html join.tbl_spark html left_join html list_sparklyr_jars html livy_config html livy_install html livy_service html ml-constructors html ml-model-constructors html ml-params html ml-persistence html ml-transform-methods html ml-tuning html ml_add_stage html ml_aft_survival_regression html ml_als html ml_als_tidiers html ml_bisecting_kmeans html ml_call_constructor html ml_chisquare_test html ml_clustering_evaluator html ml_corr html ml_decision_tree html ml_default_stop_words html ml_evaluate html ml_evaluator html ml_feature_importances html ml_fpgrowth html ml_gaussian_mixture html ml_generalized_linear_regression html ml_glm_tidiers html ml_gradient_boosted_trees html ml_isotonic_regression html ml_isotonic_regression_tidiers html ml_kmeans html ml_lda html ml_lda_tidiers html ml_linear_regression html ml_linear_svc html ml_linear_svc_tidiers html ml_logistic_regression html ml_logistic_regression_tidiers html ml_model_data html ml_multilayer_perceptron_classifier html ml_multilayer_perceptron_tidiers html ml_naive_bayes html ml_naive_bayes_tidiers html ml_one_vs_rest html ml_pca_tidiers html ml_pipeline html ml_power_iteration html ml_random_forest html ml_stage html ml_standardize_formula html ml_summary html ml_survival_regression_tidiers html ml_tree_tidiers html ml_uid html ml_unsupervised_tidiers html mutate html na.replace html nest html pipe html pivot_longer html pivot_wider html print_jobj html quote_sql_name html random_string html reactiveSpark html reexports html registerDoSpark html register_extension html right_join html sdf-saveload html sdf-transform-methods html sdf_along html sdf_bind html sdf_broadcast html sdf_checkpoint html sdf_coalesce html sdf_collect html sdf_copy_to html sdf_crosstab html sdf_debug_string html sdf_describe html sdf_dim html sdf_distinct html sdf_drop_duplicates html sdf_expand_grid html sdf_fast_bind_cols html sdf_from_avro html sdf_is_streaming html sdf_last_index html sdf_len html sdf_num_partitions html sdf_partition_sizes html sdf_persist html sdf_pivot html sdf_project html sdf_quantile html sdf_random_split html sdf_read_column html sdf_register html sdf_repartition html sdf_residuals html sdf_sample html sdf_schema html sdf_separate_column html sdf_seq html sdf_sort html sdf_sql html sdf_to_avro html sdf_unnest_longer html sdf_unnest_wider html sdf_weighted_sample html sdf_with_sequential_id html sdf_with_unique_id html select html separate html spark-api html spark-connections html spark_adaptive_query_execution html spark_advisory_shuffle_partition_size html spark_apply html spark_apply_bundle html spark_apply_log html spark_auto_broadcast_join_threshold html spark_coalesce_initial_num_partitions html spark_coalesce_min_num_partitions html spark_coalesce_shuffle_partitions html spark_compilation_spec html spark_compile html spark_config html spark_config_exists html spark_config_kubernetes html spark_config_packages html spark_config_settings html spark_config_value html spark_configuration html spark_connection-class html spark_connection html spark_connection_find html spark_context_config html spark_dataframe html spark_default_compilation_spec html spark_default_version html spark_dependency html spark_dependency_fallback html spark_extension html spark_get_java html spark_home_dir html spark_home_set html spark_install html spark_install_sync html spark_jobj-class html spark_jobj html spark_load_table html spark_log html spark_pipeline_stage html spark_read html spark_read_avro html spark_read_csv html spark_read_delta html spark_read_jdbc html spark_read_json html spark_read_libsvm html spark_read_orc html spark_read_parquet html spark_read_source html spark_read_table html spark_read_text html spark_save_table html spark_table_name html spark_version html spark_version_from_home html spark_versions html spark_web html spark_write html spark_write_avro html spark_write_csv html spark_write_delta html spark_write_jdbc html spark_write_json html spark_write_orc html spark_write_parquet html spark_write_rds html spark_write_source html spark_write_table html spark_write_text html sql-transformer html src_databases html stream_find html stream_generate_test html stream_id html stream_lag html stream_name html stream_read_csv html stream_read_delta html stream_read_json html stream_read_kafka html stream_read_orc html stream_read_parquet html stream_read_socket html stream_read_text html stream_render html stream_stats html stream_stop html stream_trigger_continuous html stream_trigger_interval html stream_view html stream_watermark html stream_write_console html stream_write_csv html stream_write_delta html stream_write_json html stream_write_kafka html stream_write_memory html stream_write_orc html stream_write_parquet html stream_write_text html sub-.tbl_spark html tbl_cache html tbl_change_db html tbl_uncache html transform_sdf html unite html unnest html worker_spark_apply_unbundle html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparklyr) Making 'packages.html' ... done * installing *source* package 'earth' ... ** package 'earth' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allowed.c -o allowed.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c earth.c -o earth.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c leaps.f -o leaps.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c leapshdr.f -o leapshdr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rentries.c -o rentries.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o earth.so allowed.o earth.o leaps.o leapshdr.o rentries.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-earth/00new/earth/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'earth' finding HTML links ... done contr.earth.response html earth html earth.object html etitanic html evimp html expand.bpairs html format.earth html mars.to.earth html model.matrix.earth html ozone1 html plot.earth html plot.earth.models html plot.evimp html plot.varmod html plotd html predict.earth html predict.varmod html residuals.earth html summary.earth html update.earth html varmod html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (earth) Making 'packages.html' ... done * installing *source* package 'keras' ... ** package 'keras' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'keras' finding HTML links ... done KerasCallback html finding level-2 HTML links ... done KerasConstraint html KerasLayer html KerasWrapper html Layer html activation_relu html adapt html application_densenet html application_inception_resnet_v2 html application_inception_v3 html application_mobilenet html application_mobilenet_v2 html application_nasnet html application_resnet50 html application_vgg html application_xception html backend html bidirectional html callback_csv_logger html callback_early_stopping html callback_lambda html callback_learning_rate_scheduler html callback_model_checkpoint html callback_progbar_logger html callback_reduce_lr_on_plateau html callback_remote_monitor html callback_tensorboard html callback_terminate_on_naan html clone_model html compile.keras.engine.training.Model html constraints html count_params html create_layer html create_wrapper html dataset_boston_housing html dataset_cifar10 html dataset_cifar100 html dataset_fashion_mnist html dataset_imdb html dataset_mnist html dataset_reuters html evaluate.keras.engine.training.Model html evaluate_generator html export_savedmodel.keras.engine.training.Model html fit.keras.engine.training.Model html fit_generator html fit_image_data_generator html fit_text_tokenizer html flow_images_from_data html flow_images_from_dataframe html flow_images_from_directory html freeze_weights html generator_next html get_config html get_file html get_input_at html get_layer html get_vocabulary html get_weights html hdf5_matrix html image_data_generator html image_dataset_from_directory html image_load html image_to_array html imagenet_decode_predictions html imagenet_preprocess_input html implementation html initializer_constant html initializer_glorot_normal html initializer_glorot_uniform html initializer_he_normal html initializer_he_uniform html initializer_identity html initializer_lecun_normal html initializer_lecun_uniform html initializer_ones html initializer_orthogonal html initializer_random_normal html initializer_random_uniform html initializer_truncated_normal html initializer_variance_scaling html initializer_zeros html install_keras html is_keras_available html k_abs html k_all html k_any html k_arange html k_argmax html k_argmin html k_backend html k_batch_dot html k_batch_flatten html k_batch_get_value html k_batch_normalization html k_batch_set_value html k_bias_add html k_binary_crossentropy html k_cast html k_cast_to_floatx html k_categorical_crossentropy html k_clear_session html k_clip html k_concatenate html k_constant html k_conv1d html k_conv2d html k_conv2d_transpose html k_conv3d html k_conv3d_transpose html k_cos html k_count_params html k_ctc_batch_cost html k_ctc_decode html k_ctc_label_dense_to_sparse html k_cumprod html k_cumsum html k_depthwise_conv2d html k_dot html k_dropout html k_dtype html k_elu html k_epsilon html k_equal html k_eval html k_exp html k_expand_dims html k_eye html k_flatten html k_floatx html k_foldl html k_foldr html k_function html k_gather html k_get_session html k_get_uid html k_get_value html k_get_variable_shape html k_gradients html k_greater html k_greater_equal html k_hard_sigmoid html k_identity html k_image_data_format html k_in_test_phase html k_in_top_k html k_in_train_phase html k_int_shape html k_is_keras_tensor html k_is_placeholder html k_is_sparse html k_is_tensor html k_l2_normalize html k_learning_phase html k_less html k_less_equal html k_local_conv1d html k_local_conv2d html k_log html k_logsumexp html k_manual_variable_initialization html k_map_fn html k_max html k_maximum html k_mean html k_min html k_minimum html k_moving_average_update html k_ndim html k_normalize_batch_in_training html k_not_equal html k_one_hot html k_ones html k_ones_like html k_permute_dimensions html k_placeholder html k_pool2d html k_pool3d html k_pow html k_print_tensor html k_prod html k_random_binomial html k_random_normal html k_random_normal_variable html k_random_uniform html k_random_uniform_variable html k_relu html k_repeat html k_repeat_elements html k_reset_uids html k_reshape html k_resize_images html k_resize_volumes html k_reverse html k_rnn html k_round html k_separable_conv2d html k_set_learning_phase html k_set_value html k_shape html k_sigmoid html k_sign html k_sin html k_softmax html k_softplus html k_softsign html k_sparse_categorical_crossentropy html k_spatial_2d_padding html k_spatial_3d_padding html k_sqrt html k_square html k_squeeze html k_stack html k_std html k_stop_gradient html k_sum html k_switch html k_tanh html k_temporal_padding html k_tile html k_to_dense html k_transpose html k_truncated_normal html k_update html k_update_add html k_update_sub html k_var html k_variable html k_zeros html k_zeros_like html keras-package html keras_array html keras_model html keras_model_custom html keras_model_sequential html layer_activation html layer_activation_elu html layer_activation_leaky_relu html layer_activation_parametric_relu html layer_activation_relu html layer_activation_selu html layer_activation_softmax html layer_activation_thresholded_relu html layer_activity_regularization html layer_add html layer_alpha_dropout html layer_attention html layer_average html layer_average_pooling_1d html layer_average_pooling_2d html layer_average_pooling_3d html layer_batch_normalization html layer_concatenate html layer_conv_1d html layer_conv_1d_transpose html layer_conv_2d html layer_conv_2d_transpose html layer_conv_3d html layer_conv_3d_transpose html layer_conv_lstm_2d html layer_cropping_1d html layer_cropping_2d html layer_cropping_3d html layer_cudnn_gru html layer_cudnn_lstm html layer_dense html layer_dense_features html layer_depthwise_conv_2d html layer_dot html layer_dropout html layer_embedding html layer_flatten html layer_gaussian_dropout html layer_gaussian_noise html layer_global_average_pooling_1d html layer_global_average_pooling_2d html layer_global_average_pooling_3d html layer_global_max_pooling_1d html layer_global_max_pooling_2d html layer_global_max_pooling_3d html layer_gru html layer_input html layer_lambda html layer_layer_normalization html layer_locally_connected_1d html layer_locally_connected_2d html layer_lstm html layer_masking html layer_max_pooling_1d html layer_max_pooling_2d html layer_max_pooling_3d html layer_maximum html layer_minimum html layer_multi_head_attention html layer_multiply html layer_permute html layer_repeat_vector html layer_reshape html layer_separable_conv_1d html layer_separable_conv_2d html layer_simple_rnn html layer_spatial_dropout_1d html layer_spatial_dropout_2d html layer_spatial_dropout_3d html layer_subtract html layer_text_vectorization html layer_upsampling_1d html layer_upsampling_2d html layer_upsampling_3d html layer_zero_padding_1d html layer_zero_padding_2d html layer_zero_padding_3d html loss_binary_crossentropy html loss_mean_squared_error html make_sampling_table html metric_binary_accuracy html model_from_saved_model html model_to_json html model_to_saved_model html model_to_yaml html multi-assign html Rd warning: /tmp/RtmpeyNMXz/R.INSTALL75e8777fb1b2/keras/man/multi-assign.Rd:10: file link '%<-%' in package 'zeallot' does not exist and so has been treated as a topic multi_gpu_model html normalize html optimizer_adadelta html optimizer_adagrad html optimizer_adam html optimizer_adamax html optimizer_nadam html optimizer_rmsprop html optimizer_sgd html pad_sequences html pipe html Rd warning: /tmp/RtmpeyNMXz/R.INSTALL75e8777fb1b2/keras/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic plot.keras_training_history html pop_layer html predict.keras.engine.training.Model html predict_generator html predict_on_batch html predict_proba html reexports html regularizer_l1 html reset_states html save_model_hdf5 html save_model_tf html save_model_weights_hdf5 html save_model_weights_tf html save_text_tokenizer html sequences_to_matrix html serialize_model html set_vocabulary html skipgrams html summary.keras.engine.training.Model html text_hashing_trick html text_one_hot html text_to_word_sequence html text_tokenizer html texts_to_matrix html texts_to_sequences html texts_to_sequences_generator html time_distributed html timeseries_generator html to_categorical html train_on_batch html use_implementation html with_custom_object_scope html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (keras) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning messages: 1: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'sf' had non-zero exit status 2: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'rgdal' had non-zero exit status 3: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'rgeos' had non-zero exit status 4: In system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 STEP 25: RUN Rscript --no-save ai-ml-packages.R plotly plotROC plumber randomForest RCurl readr readxl reticulate RJDBC rmarkdown roxygen2 also installing the dependencies 'showimage', 'fontBitstreamVera', 'fontLiberation', 'reshape', 'debugme', 'webdriver', 'fontquiver', 'freetypeharfbuzz', 'repr', 'hexbin', 'ggthemes', 'GGally', 'shinytest', 'vdiffr', 'Cairo', 'listviewer', 'dendextend', 'sf', 'rgeos', 'IRdisplay', 'plotlyGeoAssets', 'palmerpenguins' * installing *source* package 'showimage' ... ** package 'showimage' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'showimage' finding HTML links ... done show_image html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (showimage) Making 'packages.html' ... done * installing *source* package 'fontBitstreamVera' ... ** package 'fontBitstreamVera' successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help No man pages found in package 'fontBitstreamVera' *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontBitstreamVera) Making 'packages.html' ... done * installing *source* package 'fontLiberation' ... ** package 'fontLiberation' successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help No man pages found in package 'fontLiberation' *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontLiberation) Making 'packages.html' ... done * installing *source* package 'reshape' ... ** package 'reshape' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reshape' finding HTML links ... done add-all-combinations-dk html add-missing-levels-ko html all-vars-character-rs html as-data-frame-cast-df-v7 html as-data-frame-cast-matrix-59 html as-matrix-cast-df-bu html as-matrix-cast-matrix-2y html cast-9g html cast-matrix-hj html cast-parse-formula-uw html check-formula-20 html clean-vars-rc html colsplit-9h html combine-factor-9x html compute-margins-dh html condense-df-34 html condense-ss html dim-names-fi html expand-grid-df-fl html expand-kx html french-fries html funstofun-gl html guess-value-2f html margin-vars-rw html melt-24 html melt-array-e0 html melt-cast-df-c7 html melt-cast-matrix-vq html melt-check-j7 html melt-data-frame-da html melt-default-gi html melt-list-8m html merge-all-hc html merge-recurse-2d html namerows-6u html nested-by-92 html nulldefault-ck html prettyprint-hy html rdimnames-11 html recast-ar html rename-au html rescaler-40 html rescaler-data-frame-4u html rescaler-default-bl html rescaler-matrix-xv html reshape-4u html round-any-u2 html smiths html sort-df-aw html sparse-by html stamp-fw html str-cast-matrix-ez html strip-dups-7t html tidystamp-1p html tips html uniquedefault-01 html untable-1x html updatelist-50 html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape) Making 'packages.html' ... done * installing *source* package 'debugme' ... ** package 'debugme' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'debugme' finding HTML links ... done debug html debugme html handle_dynamic_code html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (debugme) Making 'packages.html' ... done * installing *source* package 'repr' ... ** package 'repr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'repr' finding HTML links ... done repr-generics html repr-options html Rd warning: /tmp/RtmplG4awB/R.INSTALL78cd153847af/repr/man/repr-options.Rd:15: file link 'getOption' in package 'base' does not exist and so has been treated as a topic repr-package html repr html repr_-times-.data.table html repr_-times-.factor html repr_-times-.function html repr_-times-.help_files_with_topic html repr_-times-.htmlwidget html repr_-times-.list html repr_-times-.matrix-slash-data.frame html repr_-times-.packageIQR html repr_-times-.recordedplot html repr_-times-.ts html repr_-times-.vector html repr_geojson.-times html repr_plotly1.-times html repr_text html repr_vega-times html times-2repr html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (repr) Making 'packages.html' ... done * installing *source* package 'hexbin' ... ** package 'hexbin' successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c hbin.f -o hbin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c hcell.f -o hcell.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c herode.f -o herode.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c hsm.f -o hsm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reg.c -o reg.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o reg.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-hexbin/00new/hexbin/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hexbin' finding HTML links ... done NHANES html colramp html erode.hexbin html getHMedian html gplot.hexbin html grid.hexagons html grid.hexlegend html hboxplot html hcell2xy html hcell2xyInt html hdiffplot html hexGraphPaper html hexList html hexMA.loess html hexTapply html hexVP-class html hexVP.abline html hexViewport html hexbin html hexbinplot html hexplom html hexpolygon html hsmooth-methods html inout.hex html list2hexList html old-classes html optShape html panel.hexboxplot html panel.hexgrid html panel.hexloess html plotMAhex html pushHexport html smooth.hexbin html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hexbin) Making 'packages.html' ... done * installing *source* package 'ggthemes' ... ** package 'ggthemes' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ggthemes' finding HTML links ... done bank_slopes html calc_pal html calc_shape_pal html canva_pal html canva_palettes html circlefill_shape_pal html cleveland_shape_pal html colorblind html economist_pal html excel_new_pal html excel_pal html few_pal html few_shape_pal html fivethirtyeight_pal html gdocs_pal html geom_rangeframe html geom_tufteboxplot html finding level-2 HTML links ... done ggthemes html ggthemes_data html hc_pal html palette_pander html ptol_pal html range_breaks html scale_calc html scale_color_tableau html scale_colour_canva html scale_colour_gradient2_tableau html scale_colour_gradient_tableau html scale_economist html scale_excel html scale_excel_new html scale_few html scale_fivethirtyeight html scale_gdocs html scale_hc html scale_linetype_stata html scale_pander html scale_ptol html scale_shape_calc html scale_shape_circlefill html scale_shape_cleveland html scale_shape_few html scale_shape_stata html scale_shape_tableau html scale_shape_tremmel html scale_solarized html scale_stata html scale_wsj html show_linetypes html show_shapes html smart_digits html solarized_pal html solarized_rebase html stat_fivenumber html Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/stat_fivenumber.Rd:82: file link 'stat_boxplot' in package 'ggplot2' does not exist and so has been treated as a topic stata_linetype_pal html stata_pal html stata_shape_pal html tableau_color_pal html tableau_gradient_pal html tableau_shape_pal html theme_base html theme_calc html theme_clean html theme_economist html theme_excel html theme_excel_new html theme_few html theme_fivethirtyeight html theme_foundation html Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_foundation.Rd:19: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_foundation.Rd:19: file link 'theme_bw' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_foundation.Rd:23: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic theme_gdocs html theme_hc html theme_igray html Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_igray.Rd:20: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_igray.Rd:22: file link 'theme_bw' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_igray.Rd:25: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_igray.Rd:38: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_igray.Rd:39: file link 'theme_bw' in package 'ggplot2' does not exist and so has been treated as a topic theme_map html theme_pander html theme_par html theme_solarized html Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_solarized.Rd:28: file link 'theme_bw' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaesRI4/R.INSTALL79cf1e5eb9d7/ggthemes/man/theme_solarized.Rd:29: file link 'theme_gray' in package 'ggplot2' does not exist and so has been treated as a topic theme_solid html theme_stata html theme_tufte html theme_wsj html tremmel_shape_pal html wsj_pal html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggthemes) Making 'packages.html' ... done * installing *source* package 'Cairo' ... ** package 'Cairo' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for pkg-config... /usr/bin/pkg-config checking whether pkg-config knows about cairo... yes checking for configurable backends... cairo cairo-ft cairo-pdf cairo-png cairo-ps cairo-xlib cairo-xlib-xrender checking whether --static is needed... no configure: CAIRO_CFLAGS=-I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid checking if R was compiled with the RConn patch... no checking cairo.h usability... yes checking cairo.h presence... yes checking for cairo.h... yes checking for PNG support in Cairo... yes checking for ATS font support in Cairo... no configure: CAIRO_LIBS=-lfreetype -lpng16 -lz -lcairo -lXext -lXrender -lX11 checking for library containing deflate... none required checking whether Cairo programs can be compiled... yes checking whether cairo_image_surface_get_format is declared... no checking for FreeType support in cairo... yes checking whether FreeType needs additional flags... no checking wheter libjpeg works... yes checking wheter libtiff works... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/cconfig.h ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c cairobem.c -o cairobem.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c cairogd.c -o cairogd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c cairotalk.c -o cairotalk.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c img-backend.c -o img-backend.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c img-jpeg.c -o img-jpeg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c img-tiff.c -o img-tiff.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c pdf-backend.c -o pdf-backend.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c ps-backend.c -o ps-backend.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c svg-backend.c -o svg-backend.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c w32-backend.c -o w32-backend.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I. -Iinclude -I/usr/local/include -g -O2 -fpic -g -O2 -c xlib-backend.c -o xlib-backend.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Cairo.so cairobem.o cairogd.o cairotalk.o img-backend.o img-jpeg.o img-tiff.o pdf-backend.o ps-backend.o svg-backend.o w32-backend.o xlib-backend.o -lfreetype -lpng16 -lz -lcairo -lXext -lXrender -lX11 -ljpeg -ltiff -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Cairo/00new/Cairo/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Cairo' finding HTML links ... done Cairo html Cairo.capabilities html Cairo.capture html Cairo.onSave html Cairo.serial html CairoFontMatch html CairoFonts html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Cairo) Making 'packages.html' ... done * installing *source* package 'listviewer' ... ** package 'listviewer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'listviewer' finding HTML links ... done jsonedit-shiny html jsonedit html jsoneditAddin html jsonedit_gadget html listviewer html number_unnamed html reactjson-shiny html reactjson html recurse html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (listviewer) Making 'packages.html' ... done * installing *source* package 'dendextend' ... ** package 'dendextend' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dendextend' finding HTML links ... done Bk html Bk_permutations html Bk_plot html DendSer.dendrogram html FM_index html FM_index_R html FM_index_permutation html all.equal.dendrogram html all_couple_rotations_at_k html all_unique html as.dendlist html as.phylo.dendrogram html as_hclust_fixed html assign_dendextend_options html assign_values_to_branches_edgePar html assign_values_to_leaves_edgePar html assign_values_to_leaves_nodePar html assign_values_to_nodes_nodePar html bakers_gamma_for_2_k_matrix html branches_attr_by_clusters html branches_attr_by_labels html branches_attr_by_lists html circlize_dendrogram html click_rotate html collapse_branch html color_branches html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_branches.Rd:66: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_branches.Rd:34: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_branches.Rd:36: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_branches.Rd:13: file link 'cutree.dendrogram' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_branches.Rd:237: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic color_labels html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_labels.Rd:51: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_labels.Rd:25: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_labels.Rd:27: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/color_labels.Rd:80: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic color_unique_labels html colored_bars html colored_dots html common_subtrees_clusters html cor.dendlist html cor_FM_index html cor_bakers_gamma html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/cor_bakers_gamma.Rd:38: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/cor_bakers_gamma.Rd:52: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic cor_common_nodes html cor_cophenetic html count_terminal_nodes html cut_lower_fun html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/cut_lower_fun.Rd:31: file link 'cutree.dendrogram' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/cut_lower_fun.Rd:59: file link 'cutree.dendrogram' in package 'dendextend' does not exist and so has been treated as a topic cutree-methods html cutree_1h.dendrogram html cutree_1k.dendrogram html dend_diff html dendextend-package html dendextend_options html dendlist html depth html dist.dendlist html dist_long html distinct_edges html duplicate_leaf html entanglement html fac2num html find_dend html find_dendrogram html find_k html fix_members_attr.dendrogram html flatten.dendrogram html flip_leaves html get_branches_heights html get_childrens_heights html get_leaves_attr html get_leaves_branches_attr html get_leaves_branches_col html get_leaves_edgePar html get_leaves_nodePar html get_nodes_attr html get_nodes_xy html get_root_branches_attr html get_subdendrograms html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/get_subdendrograms.Rd:15: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic ggdend html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/ggdend.Rd:69: file link 'geom_line' in package 'ggplot2' does not exist and so has been treated as a topic hang.dendrogram html has_component_in_attribute html heights_per_k.dendrogram html highlight_branches html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/highlight_branches.Rd:122: file link 'viridis' in package 'viridis' does not exist and so has been treated as a topic highlight_distinct_edges html identify.dendrogram html intersect_trees html is.natural.number html is_null_list html is_some_class html khan html labels-assign html labels_cex html labels_colors html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/labels_colors.Rd:67: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic ladderize html leaf_Colors html lowest_common_branch html match_order_by_labels html match_order_dendrogram_by_old_order html na_locf html nleaves html nnodes html noded_with_condition html order.dendrogram-assign html order.hclust html partition_leaves html plot_horiz.dendrogram html prune html prune_common_subtrees.dendlist html prune_leaf html pvclust_edges html pvclust_show_signif html pvclust_show_signif_gradient html pvrect2 html raise.dendrogram html rank_branches html rank_order.dendrogram html rank_values_with_clusters html rect.dendrogram html reexports html reindex_dend html remove_branches_edgePar html remove_leaves_nodePar html remove_nodes_nodePar html rllply html rotate html rotate_DendSer html sample.dendrogram html seriate_dendrogram html set html set_labels html shuffle html sort_2_clusters_vectors html sort_dist_mat html sort_levels_values html Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/sort_levels_values.Rd:45: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpYDRD4v/R.INSTALL7e386f3b15d/dendextend/man/sort_levels_values.Rd:73: file link 'cutree' in package 'dendextend' does not exist and so has been treated as a topic tanglegram html theme_dendro html unbranch html unclass_dend html untangle html untangle_DendSer html untangle_random_search html untangle_step_rotate_1side html untangle_step_rotate_2side html which_leaf html which_node html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dendextend) Making 'packages.html' ... done * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERROR: configuration failed for package 'sf' * removing '/opt/R/4.0.3/lib/R/library/sf' * installing *source* package 'rgeos' ... ** package 'rgeos' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc configure: CXX: g++ -std=gnu++11 configure: rgeos: 0.5-5 checking for /usr/bin/svnversion... no configure: svn revision: 640 checking for geos-config... no no configure: error: geos-config not found or not executable. ERROR: configuration failed for package 'rgeos' * removing '/opt/R/4.0.3/lib/R/library/rgeos' * installing *source* package 'plotlyGeoAssets' ... ** package 'plotlyGeoAssets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotlyGeoAssets' finding HTML links ... done geo_assets html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotlyGeoAssets) Making 'packages.html' ... done * installing *source* package 'palmerpenguins' ... ** package 'palmerpenguins' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'palmerpenguins' finding HTML links ... done palmerpenguins-package html path_to_file html penguins html penguins_raw html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palmerpenguins) Making 'packages.html' ... done * installing *source* package 'plotly' ... ** package 'plotly' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotly' finding HTML links ... done TeX html add_annotations html add_data html add_fun html add_trace html animation html api html as.widget html as_widget html attrs_selected html bbox html colorbar html config html embed_notebook html event_data html event_register html event_unregister html export html geom2trace html get_figure html gg2list html ggplotly html group2NA html hide_colorbar html hide_guides html hide_legend html highlight html highlight_key html hobbs html knit_print.api_grid html knit_print.api_grid_local html knit_print.api_plot html last_plot html layout html mic html offline html orca html partial_bundle html plot_dendro html plot_geo html plot_ly html plot_mapbox html plotly-shiny html plotly html plotlyProxy html plotly_IMAGE html plotly_POST html plotly_build html plotly_data html plotly_empty html plotly_example html plotly_json html print.api html print.api_grid html print.api_grid_local html print.api_plot html rangeslider html raster2uri html reexports html remove_typedarray_polyfill html res_mn html schema html showRGB html signup html style html subplot html toRGB html toWebGL html to_basic html wind html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotly) Making 'packages.html' ... done * installing *source* package 'webdriver' ... ** package 'webdriver' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'webdriver' finding HTML links ... done Element html Session html Window html element_sendKeys html install_phantomjs html key html run_phantomjs html webdriver html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webdriver) Making 'packages.html' ... done * installing *source* package 'fontquiver' ... ** package 'fontquiver' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fontquiver' finding HTML links ... done font_families html font_variants html fonts html fontset_info html fontset_list html fontset_register html fontset_variants html htmlFontDependency html splice_fonts html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontquiver) Making 'packages.html' ... done * installing *source* package 'GGally' ... ** package 'GGally' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GGally' finding HTML links ... done GGally-package html add_and_overwrite_aes html add_ref_boxes html add_ref_lines html australia_PISA2012 html brew_colors html broomify html column_is_character html eval_data_col html find_plot_type html flea html fn_switch html geom_stripped_rows html getPlot html get_x_axis_labels html gg-add html ggally_autopoint html ggally_barDiag html ggally_blank html ggally_box html ggally_colbar html ggally_cor html Rd warning: /tmp/RtmpZ7xR7w/R.INSTALL45b6d9618b/GGally/man/ggally_cor.Rd:46: file link 'formatC' in package 'base' does not exist and so has been treated as a topic ggally_cor_v1_5 html ggally_count html ggally_cross html ggally_crosstable html ggally_density html ggally_densityDiag html ggally_denstrip html ggally_diagAxis html ggally_dot html ggally_dot_and_box html ggally_facetbar html ggally_facetdensity html ggally_facetdensitystrip html ggally_facethist html ggally_na html ggally_nostic_cooksd html ggally_nostic_hat html ggally_nostic_line html ggally_nostic_resid html ggally_nostic_se_fit html ggally_nostic_sigma html ggally_nostic_std_resid html ggally_points html ggally_ratio html ggally_smooth html ggally_statistic html ggally_summarise_by html ggally_table html ggally_text html ggally_trends html ggbivariate html ggcoef html ggcoef_model html ggcorr html ggduo html ggfacet html gglegend html ggmatrix html ggmatrix_gtable html ggmatrix_location html ggmatrix_progress html ggnet html ggnet2 html ggnetworkmap html ggnostic html ggpairs html ggparcoord html ggscatmat html ggsurv html ggtable html ggts html glyphplot html glyphs html grab_legend html happy html is_blank_plot html is_date html is_horizontal html lowertriangle html mapping_color_to_fill html mapping_string html mapping_swap_x_y html model_terms html nasa html pigs html pipe html plot_types html plotting_data_type html print.ggmatrix html print_if_interactive html psychademic html putPlot html remove_color_unless_equal html require_namespaces html rescale01 html scag_order html scatmat html signif_stars html singleClassOrder html skewness html stat_cross html stat_prop html stat_weighted_mean html str.ggmatrix html twitter_spambots html uppertriangle html v1_ggmatrix_theme html vig_ggally html wrap html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GGally) Making 'packages.html' ... done * installing *source* package 'IRdisplay' ... ** package 'IRdisplay' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'IRdisplay' finding HTML links ... done IRdisplay-options html display-images html Rd warning: /tmp/RtmpJey8O9/R.INSTALL4cd29b27cef/IRdisplay/man/display-images.Rd:22: file link 'connection' in package 'base' does not exist and so has been treated as a topic display-textual html Rd warning: /tmp/RtmpJey8O9/R.INSTALL4cd29b27cef/IRdisplay/man/display-textual.Rd:28: file link 'connection' in package 'base' does not exist and so has been treated as a topic display html publish_mimebundle html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRdisplay) Making 'packages.html' ... done * installing *source* package 'freetypeharfbuzz' ... ** package 'freetypeharfbuzz' successfully unpacked and MD5 sums checked ** using staged installation 0.2.5 Selecting -std=c99 flag ** libs cd /tmp/RtmpALVG3I/R.INSTALL53f1ae868a2/freetypeharfbuzz/src/../tools && make make[1]: Entering directory '/tmp/RtmpALVG3I/R.INSTALL53f1ae868a2/freetypeharfbuzz/tools' ./download.sh "https://github.com/lionel-/freetypeharfbuzz/raw/v`cat version`/tools/freetype-2.9-patched.tar.gz" freetype-2.9-patched.tar.gz trying URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz' Error in download.file("https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz", : cannot open URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz' In addition: Warning message: In download.file("https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz", : URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz': status was 'SSL connect error' Execution halted make[1]: *** [Makefile:19: freetype-2.9-patched.tar.gz] Error 1 make[1]: Leaving directory '/tmp/RtmpALVG3I/R.INSTALL53f1ae868a2/freetypeharfbuzz/tools' make: *** [Makebuild:16: /tmp/RtmpALVG3I/R.INSTALL53f1ae868a2/freetypeharfbuzz/src/../tools/freetype-2.9-patched.tar.gz] Error 2 ERROR: compilation failed for package 'freetypeharfbuzz' * removing '/opt/R/4.0.3/lib/R/library/freetypeharfbuzz' * installing *source* package 'shinytest' ... ** package 'shinytest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shinytest' finding HTML links ... done ShinyDriver html Widget html dependenciesInstalled html diffviewer_widget html expectUpdate html expect_pass html migrateShinytestDir html osName html recordTest html registerInputProcessor html shinytest-package html snapshotCompare html testApp html textTestDiff html viewTestDiff html viewTestDiffWidget html ** building package indices ** testing if installed package can be loaded from temporary location shinytest requires PhantomJS to record and run tests. * To install it, run shinytest::installDependencies() * If it is installed, please check it is available on the PATH ** testing if installed package can be loaded from final location shinytest requires PhantomJS to record and run tests. * To install it, run shinytest::installDependencies() * If it is installed, please check it is available on the PATH ** testing if installed package keeps a record of temporary installation path * DONE (shinytest) Making 'packages.html' ... done ERROR: dependency 'freetypeharfbuzz' is not available for package 'vdiffr' * removing '/opt/R/4.0.3/lib/R/library/vdiffr' Updating HTML index of packages in '.Library' Making 'packages.html' ... done Loading required package: ggplot2 Attaching package: 'plotly' The following object is masked from 'package:ggplot2': last_plot The following object is masked from 'package:stats': filter The following object is masked from 'package:graphics': layout also installing the dependencies 'gridSVG', 'survivalROC' * installing *source* package 'gridSVG' ... ** package 'gridSVG' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gridSVG' finding HTML links ... done animUnit html animate html convert html coords html fe html feBlend html feColorMatrix html feComponentTransfer html feComposite html feConvolveMatrix html feDiffuseLighting html feDisplacementMap html feDistantLight html feFlood html feGaussianBlur html feImage html feMerge html feMorphology html feOffset html fePointLight html feSpecularLighting html feSpotLight html feTile html feTurbulence html filterEffect html filterInputs html garnish html getSVGFonts html getSVGMappings html gradients html grid.animate html grid.clipPath html grid.comment html grid.element html grid.export html grid.filter html grid.garnish html grid.gradientFill html grid.hyperlink html grid.mask html grid.patternFill html grid.script html gridSVG-internal html gridSVG.newpage html gridSVGMappings html gridsvg html Rd warning: /tmp/Rtmpw8TbzE/R.INSTALL7842c99694f/gridSVG/man/gridsvg.Rd:55: file link 'dev.off' in package 'grDevices' does not exist and so has been treated as a topic grobToDev html listSVGDefinitions html popContext html primToDev html pushClipPath html pushMask html readCoordsJS html finding level-2 HTML links ... done readMappingsJS html registerClipPath html registerFilter html registerGradientFill html registerMask html registerPatternFill html setSVGoptions html viewportCreate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridSVG) Making 'packages.html' ... done * installing *source* package 'survivalROC' ... ** package 'survivalROC' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survivalROC.c -o survivalROC.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o survivalROC.so survivalROC.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-survivalROC/00new/survivalROC/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survivalROC' finding HTML links ... done mayo html survivalROC.C html survivalROC html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survivalROC) Making 'packages.html' ... done * installing *source* package 'plotROC' ... ** package 'plotROC' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plotROC' finding HTML links ... done calc_auc html calculate_multi_roc html calculate_roc html direct_label html export_interactive_roc html geom_roc html finding level-2 HTML links ... done geom_rocci html getD3 html ggroc html melt_roc html multi_ggroc html plotROC html plot_interactive_roc html plot_journal_roc html roc_key html shiny_plotROC html stat_roc html stat_rocci html style_roc html verify_d html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotROC) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'webutils', 'sodium', 'swagger', 'visNetwork' * installing *source* package 'webutils' ... ** package 'webutils' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c memmem.c -o memmem.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c register.c -o register.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c split.c -o split.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o webutils.so memmem.o register.o split.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-webutils/00new/webutils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'webutils' finding HTML links ... done demo_httpuv html demo_rhttpd html parse_http html finding level-2 HTML links ... done parse_multipart html parse_query html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webutils) Making 'packages.html' ... done * installing *source* package 'sodium' ... ** package 'sodium' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lsodium ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hashing.c -o hashing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c helpers.c -o helpers.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c messaging.c -o messaging.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c seal.c -o seal.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c secret.c -o secret.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xor.c -o xor.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o sodium.so diffie.o hashing.o helpers.o init.o keygen.o messaging.o password.o seal.o secret.o signing.o stream.o xor.o -lsodium -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-sodium/00new/sodium/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sodium' finding HTML links ... done diffie html hash html helpers html keygen html messaging html password html sig html simple html stream html symmetric html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sodium) Making 'packages.html' ... done * installing *source* package 'swagger' ... ** package 'swagger' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'swagger' finding HTML links ... done plumber_docs html swagger-package html swagger_index html swagger_path html swagger_spec html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (swagger) Making 'packages.html' ... done * installing *source* package 'visNetwork' ... ** package 'visNetwork' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'visNetwork' finding HTML links ... done addExport html addFontAwesome html addIonicons html visClusteringByColor html visClusteringByConnection html visClusteringByGroup html visClusteringByHubsize html visClusteringOutliers html visConfigure html visDocumentation html visEdges html visEvents html visExport html visFit html visFocus html visGetBoundingBox html visGetConnectedEdges html visGetConnectedNodes html visGetEdges html visGetNodes html visGetPositions html visGetScale html visGetSelectedEdges html visGetSelectedNodes html visGetSelection html visGetViewPosition html visGroups html visHclust html visHierarchicalLayout html visIgraphLayout html visInteraction html visLayout html visLegend html visMoveNode html visNearestNodes html visNetwork-collapse html visNetwork-exports html visNetwork-igraph html visNetwork-shiny html visNetwork-treeModule html visNetwork html visNetworkEditor-module html visNetworkEditor html visNodes html visOptions html visPhysics html visRedraw html visRemoveEdges html visRemoveNodes html visSave html finding level-2 HTML links ... done visSelectEdges html visSelectNodes html visSetData html visSetOptions html visSetSelection html visSetTitle html visStabilize html visStartSimulation html visStopSimulation html visStorePositions html visTree html visTreeEditor html visUnselectAll html visUpdateEdges html visUpdateNodes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visNetwork) Making 'packages.html' ... done * installing *source* package 'plumber' ... ** package 'plumber' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'plumber' finding HTML links ... done Hookable html Plumber html PlumberEndpoint html PlumberStatic html PlumberStep html as_attachment html deprecated html deprecated_r6 html digitalocean html endpoint_serializer html forward html get_character_set html include_file html is_plumber html options_plumber html parsers html pipe html plumb html plumb_api html pr html pr_cookie html pr_filter html pr_handle html pr_hook html pr_mount html pr_run html pr_set_404 html pr_set_api_spec html pr_set_debug html pr_set_docs html pr_set_docs_callback html pr_set_error html pr_set_parsers html pr_set_serializer html pr_static html random_cookie_key html register_docs html register_parser html register_serializer html serializers html session_cookie html validate_api_spec html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plumber) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'randomForest' ... ** package 'randomForest' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c classTree.c -o classTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c regTree.c -o regTree.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c regrf.c -o regrf.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rf.c -o rf.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c rfsub.f -o rfsub.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rfutils.c -o rfutils.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o randomForest.so classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-randomForest/00new/randomForest/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'randomForest' finding HTML links ... done MDSplot html classCenter html combine html getTree html grow html importance html imports85 html margin html na.roughfix html outlier html partialPlot html plot.randomForest html predict.randomForest html randomForest html rfImpute html rfNews html rfcv html treesize html tuneRF html varImpPlot html varUsed html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randomForest) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done randomForest 4.6-14 Type rfNews() to see new features/changes/bug fixes. Attaching package: 'randomForest' The following object is masked from 'package:ggplot2': margin * installing *source* package 'RCurl' ... ** package 'RCurl' successfully unpacked and MD5 sums checked ** using staged installation checking for curl-config... /usr/bin/curl-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E Version has a libidn field Version has CURLOPT_URL Version has CURLINFO_EFFECTIVE_URL Version has CURLINFO_RESPONSE_CODE Version has CURLINFO_TOTAL_TIME Version has CURLINFO_NAMELOOKUP_TIME Version has CURLINFO_CONNECT_TIME Version has CURLINFO_PRETRANSFER_TIME Version has CURLINFO_SIZE_UPLOAD Version has CURLINFO_SIZE_DOWNLOAD Version has CURLINFO_SPEED_DOWNLOAD Version has CURLINFO_SPEED_UPLOAD Version has CURLINFO_HEADER_SIZE Version has CURLINFO_REQUEST_SIZE Version has CURLINFO_SSL_VERIFYRESULT Version has CURLINFO_FILETIME Version has CURLINFO_CONTENT_LENGTH_DOWNLOAD Version has CURLINFO_CONTENT_LENGTH_UPLOAD Version has CURLINFO_STARTTRANSFER_TIME Version has CURLINFO_CONTENT_TYPE Version has CURLINFO_REDIRECT_TIME Version has CURLINFO_REDIRECT_COUNT Version has CURLINFO_PRIVATE Version has CURLINFO_HTTP_CONNECTCODE Version has CURLINFO_HTTPAUTH_AVAIL Version has CURLINFO_PROXYAUTH_AVAIL Version has CURLINFO_OS_ERRNO Version has CURLINFO_NUM_CONNECTS Version has CURLINFO_SSL_ENGINES Version has CURLINFO_COOKIELIST Version has CURLINFO_LASTSOCKET Version has CURLINFO_FTP_ENTRY_PATH Version has CURLINFO_REDIRECT_URL Version has CURLINFO_PRIMARY_IP Version has CURLINFO_APPCONNECT_TIME Version has CURLINFO_CERTINFO Version has CURLINFO_CONDITION_UNMET Version has CURLOPT_WRITEDATA Version has CURLOPT_KEYPASSWD Version has CURLOPT_DIRLISTONLY Version has CURLOPT_APPEND Version has CURLOPT_KRBLEVEL Version has CURLOPT_USE_SSL Version has CURLOPT_TIMEOUT_MS Version has CURLOPT_CONNECTTIMEOUT_MS Version has CURLOPT_HTTP_TRANSFER_DECODING Version has CURLOPT_HTTP_CONTENT_DECODING Version has CURLOPT_NEW_FILE_PERMS Version has CURLOPT_NEW_DIRECTORY_PERMS Version has CURLOPT_POSTREDIR Version has CURLOPT_OPENSOCKETFUNCTION Version has CURLOPT_OPENSOCKETDATA Version has CURLOPT_COPYPOSTFIELDS Version has CURLOPT_PROXY_TRANSFER_MODE Version has CURLOPT_SEEKFUNCTION Version has CURLOPT_SEEKDATA Version has CURLOPT_CRLFILE Version has CURLOPT_ISSUERCERT Version has CURLOPT_ADDRESS_SCOPE Version has CURLOPT_CERTINFO Version has CURLOPT_USERNAME Version has CURLOPT_PASSWORD Version has CURLOPT_PROXYUSERNAME Version has CURLOPT_PROXYPASSWORD Version has CURLOPT_SSH_HOST_PUBLIC_KEY_MD5 Version has CURLOPT_NOPROXY Version has CURLOPT_TFTP_BLKSIZE Version has CURLOPT_SOCKS5_GSSAPI_SERVICE Version has CURLOPT_SOCKS5_GSSAPI_NEC Version has CURLOPT_PROTOCOLS Version has CURLOPT_REDIR_PROTOCOLS Version has CURLOPT_SSH_AUTH_TYPES Version has CURLOPT_SSH_PUBLIC_KEYFILE Version has CURLOPT_SSH_PRIVATE_KEYFILE Version has CURLOPT_FTP_SSL_CCC Version has CURLOPT_COOKIELIST Version has CURLOPT_IGNORE_CONTENT_LENGTH Version has CURLOPT_FTP_SKIP_PASV_IP Version has CURLOPT_FTP_FILEMETHOD Version has CURLOPT_LOCALPORT Version has CURLOPT_LOCALPORTRANGE Version has CURLOPT_CONNECT_ONLY Version has CURLOPT_CONV_FROM_NETWORK_FUNCTION Version has CURLOPT_CONV_TO_NETWORK_FUNCTION Version has CURLOPT_CONV_FROM_UTF8_FUNCTION Version has CURLOPT_MAX_SEND_SPEED_LARGE Version has CURLOPT_MAX_RECV_SPEED_LARGE Version has CURLOPT_FTP_ALTERNATIVE_TO_USER Version has CURLOPT_SOCKOPTFUNCTION Version has CURLOPT_SOCKOPTDATA Version has CURLOPT_SSL_SESSIONID_CACHE libcurl version: libcurl 7.61.1 configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c curl.c -o curl.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c curlInit.c -o curlInit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c curl_base64.c -o curl_base64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c enums.c -o enums.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c json.c -o json.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c memoryManagement.c -o memoryManagement.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2 -I/usr/local/include -fpic -g -O2 -c myUTF8.c -o myUTF8.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RCurl.so base64.o curl.o curlInit.o curl_base64.o enums.o json.o memoryManagement.o myUTF8.o -lcurl -lxml2 -lz -llzma -lm -ldl -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-RCurl/00new/RCurl/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RCurl' finding HTML links ... done AUTH html CFILE html CURLHandle-class html CurlFeatureBits html HTTP_VERSION_1_0 html MultiCURLHandle-class html RCurl-internal html base64 html basicHeaderGatherer html basicTextGatherer html binaryBuffer html Rd warning: /tmp/RtmpS1JEXs/R.INSTALLc4f4686a6a4/RCurl/man/binaryBuffer.Rd:15: file link 'writeBin' in package 'base' does not exist and so has been treated as a topic chunkToLineReader html clone html complete html curlError html curlEscape html curlGlobalInit html curlOptions html curlPerform html curlSetOpt html curlVersion html dynCurlReader html enums html fileUpload html findHTTPHeaderEncoding html ftpUpload html getBinaryURL html getBitIndicators html getCurlErrorClassNames html Rd warning: /tmp/RtmpS1JEXs/R.INSTALLc4f4686a6a4/RCurl/man/getCurlErrorClassNames.Rd:25: file link 'tryCatch' in package 'base' does not exist and so has been treated as a topic getCurlHandle html getCurlInfo html getFormParams html getURIAsynchronous html getURL html guessMIMEType html httpPUT html merge.list html mimeTypeExtensions html postForm html reset html scp html url.exists html Rd warning: /tmp/RtmpS1JEXs/R.INSTALLc4f4686a6a4/RCurl/man/url.exists.Rd:5: file link 'file.exists' in package 'base' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCurl) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'readr' ... ** package 'readr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Collector.cpp -o Collector.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c CollectorGuess.cpp -o CollectorGuess.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Iconv.cpp -o Iconv.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c LocaleInfo.cpp -o LocaleInfo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Reader.cpp -o Reader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Source.cpp -o Source.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c Tokenizer.cpp -o Tokenizer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerDelim.cpp -o TokenizerDelim.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerFwf.cpp -o TokenizerFwf.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c TokenizerWs.cpp -o TokenizerWs.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c connection.cpp -o connection.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c datetime.cpp -o datetime.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c grisu3.c -o grisu3.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c localtime.c -o localtime.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c parse.cpp -o parse.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c read.cpp -o read.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_convert.cpp -o type_convert.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write.cpp -o write.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write_connection.cpp -o write_connection.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c write_delim.cpp -o write_delim.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o cpp11.o datetime.o grisu3.o init.o localtime.o parse.o read.o type_convert.o write.o write_connection.o write_delim.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-readr/00new/readr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'readr' finding HTML links ... done Tokenizers html as.col_spec html callback html Rd warning: /tmp/Rtmp06CJK2/R.INSTALL110a175abe8/readr/man/callback.Rd:132: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp06CJK2/R.INSTALL110a175abe8/readr/man/callback.Rd:197: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp06CJK2/R.INSTALL110a175abe8/readr/man/callback.Rd:271: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp06CJK2/R.INSTALL110a175abe8/readr/man/callback.Rd:345: file link 'ChunkCallback' in package 'readr' does not exist and so has been treated as a topic clipboard html col_skip html cols html count_fields html datasource html date_names html encoding html format_delim html locale html melt_delim html finding level-2 HTML links ... done melt_delim_chunked html melt_fwf html melt_table html output_column html parse_atomic html parse_datetime html parse_factor html parse_guess html parse_number html parse_vector html problems html read_builtin html read_delim html read_delim_chunked html read_file html read_fwf html read_lines html read_lines_chunked html read_log html read_rds html read_table html readr-package html readr_example html show_progress html spec html spec_delim html tokenize html type_convert html write_delim html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readr) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'readxl' ... ** package 'readxl' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsWorkBook.cpp -o XlsWorkBook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsWorkSheet.cpp -o XlsWorkSheet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsxWorkBook.cpp -o XlsxWorkBook.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c XlsxWorkSheet.cpp -o XlsxWorkSheet.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cran.c -o cran.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c endian.c -o endian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ole.c -o ole.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xls.c -o xls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xlstool.c -o xlstool.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -Iunix -I. -DRCPP_DEFAULT_INCLUDE_CALL=false -I'/opt/R/4.0.3/lib/R/library/progress/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c zip.cpp -o zip.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o readxl.so RcppExports.o XlsWorkBook.o XlsWorkSheet.o XlsxWorkBook.o XlsxWorkSheet.o cran.o endian.o ole.o xls.o xlstool.o zip.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-readxl/00new/readxl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'readxl' finding HTML links ... done cell-specification html finding level-2 HTML links ... done excel_format html excel_sheets html read_excel html readxl-package html readxl_example html readxl_progress html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readxl) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'reticulate' ... ** package 'reticulate' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c event_loop.cpp -o event_loop.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c libpython.cpp -o libpython.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c output.cpp -o output.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c python.cpp -o python.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c readline.cpp -o readline.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c signals.cpp -o signals.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o reticulate.so RcppExports.o event_loop.o libpython.o output.o python.o readline.o signals.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-reticulate/00new/reticulate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reticulate' finding HTML links ... done PyClass html array_reshape html as.character.python.builtin.bytes html conda-tools html configure_environment html dict html eng_python html import html install_miniconda html install_python html iterate html miniconda_path html miniconda_update html np_array html py html py_available html py_call html py_capture_output html py_config html py_config_error_message html py_del_attr html py_del_item html py_discover_config html py_ellipsis html py_eval html py_exe html py_func html py_function_custom_scaffold html py_function_wrapper html py_get_attr html py_get_item html py_has_attr html py_help html py_help_handler html py_id html py_install html py_is_null_xptr html py_iterator html py_last_error html py_len html py_list_attributes html py_main_thread_func html py_module_available html py_none html py_run html py_save_object html py_set_attr html py_set_item html py_set_seed html py_str html py_suppress_warnings html py_to_r_wrapper html py_unicode html py_version html py_versions_windows html r-py-conversion html register_class_filter html register_help_topics html register_module_help_handler html register_suppress_warnings_handler html repl_python html reticulate html source_python html tuple html use_python html virtualenv-tools html with-as-operator html with.python.builtin.object html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reticulate) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependency 'rJava' * installing *source* package 'rJava' ... ** package 'rJava' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux' java libs : '-L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/lib/amd64/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... yes checking whether JNI programs run... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/tmp/RtmpJOadcD/R.INSTALL13082bac0ecd/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking Java version... 1.8.0_302 checking Java compatibility version (integer)... 8 checking whether /usr/bin/javah actually works... yes checking for target flags... -target 1.4 -source 1.4 checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c Rglue.c -o Rglue.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c arrayc.c -o arrayc.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c callJNI.c -o callJNI.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c callback.c -o callback.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c fields.c -o fields.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c jri_glue.c -o jri_glue.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c otables.c -o otables.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c rJava.c -o rJava.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c registration.c -o registration.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c tools.c -o tools.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o tools.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/lib/amd64/server -ljvm -L/opt/R/4.0.3/lib/R/lib -lR (cd ../jri && make) make[1]: Entering directory '/tmp/RtmpJOadcD/R.INSTALL13082bac0ecd/rJava/jri' make -C src JRI.jar make[2]: Entering directory '/tmp/RtmpJOadcD/R.INSTALL13082bac0ecd/rJava/jri/src' /usr/bin/javac -target 1.4 -source 1.4 -d . ../RConsoleOutputStream.java ../RFactor.java ../REXP.java ../Rengine.java ../RList.java ../Mutex.java ../package-info.java ../RMainLoopCallbacks.java ../RVector.java ../RBool.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings if [ -n "/usr/bin/javah" ]; then /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine; fi gcc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/opt/R/4.0.3/lib/R/include -I/opt/R/4.0.3/lib/R/include gcc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/opt/R/4.0.3/lib/R/include -I/opt/R/4.0.3/lib/R/include gcc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -I/opt/R/4.0.3/lib/R/include -I/opt/R/4.0.3/lib/R/include gcc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/opt/R/4.0.3/lib/R/include -I/opt/R/4.0.3/lib/R/include gcc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux gcc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux -fpic -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/../include/linux gcc -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -shared -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.302.b08-0.el8_4.x86_64/jre/lib/amd64/server -ljvm -Wl,--export-dynamic -fopenmp -L/usr/local/lib -L/opt/R/4.0.3/lib/R/lib -lR -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/javac -target 1.4 -source 1.4 -d . ../package-info.java ../RFactor.java ../REXP.java ../RList.java ../Mutex.java ../RVector.java ../RBool.java ../RConsoleOutputStream.java ../Rengine.java ../RMainLoopCallbacks.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings /usr/bin/jar fc JRI.jar org libjri.so make[2]: Leaving directory '/tmp/RtmpJOadcD/R.INSTALL13082bac0ecd/rJava/jri/src' rm -f libjri.so cp src/libjri.so libjri.so /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings make[1]: Leaving directory '/tmp/RtmpJOadcD/R.INSTALL13082bac0ecd/rJava/jri' installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-rJava/00new/rJava ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rJava' finding HTML links ... done Exceptions html J html accessOp html aslist html clone html instanceof html jarray html jarrayRef-class html java-tools html javaImport html jcall html jcast html jcastToArray html jcheck html jclassName html jengine html jequals html jfield html jfloat-class html jfloat html jgc html jinit html jmemprof html jnew html jnull html jobjRef-class html jpackage html jrectRef-class html jreflection html jserialize html jsimplify html loader html new html rep html show html toJava html with html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rJava) Making 'packages.html' ... done * installing *source* package 'RJDBC' ... ** package 'RJDBC' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RJDBC' finding HTML links ... done JDBC html JDBCConnection-class html JDBCConnection-methods html JDBCDriver-class html JDBCDriver-methods html JDBCResult-class html JDBCResult-methods html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RJDBC) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Loading required package: DBI Loading required package: rJava Attaching package: 'rJava' The following object is masked from 'package:RCurl': clone also installing the dependencies 'tufte', 'dygraphs', 'rsconnect' * installing *source* package 'dygraphs' ... ** package 'dygraphs' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dygraphs' finding HTML links ... done Plotters html dyAnnotation html dyAxis html dyCSS html dyCallbacks html dyCrosshair html dyDataHandler html dyDependency html dyEvent html dyGroup html dyHighlight html dyLegend html dyLimit html dyOptions html dyPlotter html dyPlugin html dyRangeSelector html dyRebase html dyRibbon html dyRoller html dySeries html dySeriesData html dyShading html dyUnzoom html dygraph-shiny html dygraph html dygraphs-exports html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dygraphs) Making 'packages.html' ... done * installing *source* package 'rsconnect' ... ** package 'rsconnect' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rsconnect' finding HTML links ... done accountUsage html accounts html addAuthorizedUser html addLinter html appDependencies html applications html authorizedUsers html configureApp html connectApiUser html connectUser html deployAPI html deployApp html deployDoc html deploySite html deployTFModel html deployments html forgetDeployment html generateAppName html lint html linter html listBundleFiles html makeLinterMessage html options html purgeApp html removeAuthorizedUser html restartApp html rpubsUpload html rsconnect-package html rsconnectPackages html servers html setAccountInfo html setProperty html showInvited html showLogs html showMetrics html showProperties html showUsage html showUsers html syncAppMetadata html taskLog html tasks html terminateApp html unsetProperty html writeManifest html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsconnect) Making 'packages.html' ... done * installing *source* package 'rmarkdown' ... ** package 'rmarkdown' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rmarkdown' finding HTML links ... done all_output_formats html beamer_presentation html compile_notebook html context_document html convert_ipynb html default_output_format html draft html find_external_resources html find_pandoc html github_document html html-dependencies html html_document html html_document_base html finding level-2 HTML links ... done html_fragment html html_notebook html html_notebook_metadata html html_notebook_output html html_vignette html includes html ioslides_presentation html knit_params_ask html knitr_options html knitr_options_html html knitr_options_pdf html latex-dependencies html latex_dependency html md_document html metadata html navbar_html html odt_document html output_format html output_metadata html paged_table html pandoc_args html pandoc_available html pandoc_citeproc_convert html pandoc_convert html pandoc_exec html pandoc_options html pandoc_path_arg html pandoc_self_contained_html html pandoc_template html parse_html_notebook html pdf_document html pkg_file_lua html powerpoint_presentation html publish_site html relative_to html render html render_delayed html render_site html render_supporting_files html resolve_output_format html rmarkdown-package html rmarkdown_format html rmd_metadata html rtf_document html run html shiny_prerendered_chunk html shiny_prerendered_clean html shiny_prerendered_server_start_code html site_resources html slidy_presentation html tufte_handout html word_document html yaml_front_matter html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) Making 'packages.html' ... done * installing *source* package 'tufte' ... ** package 'tufte' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tufte' finding HTML links ... done tufte_handout html finding level-2 HTML links ... done ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tufte) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'roxygen2' ... ** package 'roxygen2' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-roxygen2/00new/roxygen2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'roxygen2' finding HTML links ... done RoxyTopic html double_escape_md html escape_examples html is_s3_generic html load html load_options html markdown-internals html markdown-test html markdown_pass1 html namespace_roclet html object html object_format html parse_package html rd_roclet html rd_section html roc_proc_text html roclet html roclet_find html roxy_block html roxy_tag html roxy_tag_rd html roxygen2-package html roxygenize html tag_parsers html update_collate html vignette_roclet html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxygen2) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning messages: 1: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'sf' had non-zero exit status 2: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'rgeos' had non-zero exit status 3: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'freetypeharfbuzz' had non-zero exit status 4: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'vdiffr' had non-zero exit status STEP 26: RUN Rscript --no-save ai-ml-packages.R rvest scales shiny shinydashboard shinyWidgets sparklyr stringr testthat themis also installing the dependencies 'repurrrsive', 'webfakes' * installing *source* package 'repurrrsive' ... ** package 'repurrrsive' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'repurrrsive' finding HTML links ... done discog html discog_json html gap_simple html gh_repos html gh_users html gh_users_json html got_chars html got_chars_json html repurrrsive-package html sw_people html wesanderson html wesanderson_json html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (repurrrsive) Making 'packages.html' ... done * installing *source* package 'webfakes' ... ** package 'webfakes' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DNO_CGI -DNO_FILES -fpic -g -O2 -c civetweb.c -o civetweb.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DNO_CGI -DNO_FILES -fpic -g -O2 -c cleancall.c -o cleancall.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DNO_CGI -DNO_FILES -fpic -g -O2 -c crc32.c -o crc32.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DNO_CGI -DNO_FILES -fpic -g -O2 -c errors.c -o errors.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -DNO_CGI -DNO_FILES -fpic -g -O2 -c rweb.c -o rweb.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o webfakes.so civetweb.o cleancall.o crc32.o errors.o rweb.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-webfakes/00new/webfakes/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'webfakes' finding HTML links ... done httpbin_app html local_app_process html mw_etag html mw_json html mw_log html mw_multipart html mw_raw html mw_static html mw_text html mw_urlencoded html new_app html new_app_process html new_regexp html oauth2_httr_login html oauth2_login html oauth2_resource_app html oauth2_third_party_app html server_opts html tmpl_glue html webfakes_request html webfakes_response html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (webfakes) Making 'packages.html' ... done * installing *source* package 'rvest' ... ** package 'rvest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rvest' finding HTML links ... done google_form html html_attr html html_children html html_element html html_encoding_guess html html_form html html_name html html_table html html_text html minimal_html html reexports html rename html repair_encoding html rvest-package html session html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvest) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'bit', 'bit64', 'dichromat' * installing *source* package 'bit' ... ** package 'bit' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attrutil.c -o attrutil.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit.c -o bit.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chunkutil.c -o chunkutil.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c clone.c -o clone.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c integerutil.c -o integerutil.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c merge.c -o merge.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rle.c -o rle.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sort.c -o sort.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-bit/00new/bit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bit' finding HTML links ... done CoercionToStandard html Extract html Metadata html PhysVirt html Sorting html Summaries html as.bit html as.bitwhich html as.booltype html as.character.bit html as.character.bitwhich html as.ri html as.which html bbatch html bit-package html bit html bit_in html bit_init html bit_rangediff html bit_setops html bit_sort html bit_sort_unique html bit_unidup html bitsort html bitwhich html bitwhich_representation html booltype html booltypes html c.booltype html chunk html chunks html clone html copy_vector html countsort html firstNA html get_length html getsetattr html in.bitwhich html intrle html is.booltype html is.na.bit html length.bit html maxindex html merge_rev html print.bit html print.bitwhich html quicksort2 html quicksort3 html range_na html range_nanozero html range_sortna html rep.booltype html repeat.time html repfromto html rev.booltype html reverse_vector html ri html rlepack html still.identical html str.bit html str.bitwhich html symdiff html unattr html vecseq html xor html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bit) Making 'packages.html' ... done * installing *source* package 'dichromat' ... ** package 'dichromat' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dichromat' finding HTML links ... done colorschemes html dalton html dichromat html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dichromat) Making 'packages.html' ... done * installing *source* package 'scales' ... ** package 'scales' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scales' finding HTML links ... done Range html alpha html area_pal html asn_trans html atanh_trans html boxcox_trans html breaks_extended html breaks_log html breaks_pretty html breaks_width html brewer_pal html Rd warning: /tmp/RtmpZ03r6J/R.INSTALL201c6ad7bbd9/scales/man/brewer_pal.Rd:16: file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic cbreaks html col2hcl html col_numeric html colour_ramp html cscale html date_breaks html date_trans html demo_continuous html dichromat_pal html div_gradient_pal html dscale html exp_trans html expand_range html format_format html fullseq html gradient_n_pal html grey_pal html hms_trans html hue_pal html identity_pal html identity_trans html label_bytes html label_date html label_dollar html label_number html label_number_auto html label_number_si html label_ordinal html label_parse html label_percent html label_pvalue html label_scientific html label_wrap html linetype_pal html log_trans html manual_pal html minor_breaks_width html muted html number html number_bytes_format html oob html probability_trans html reciprocal_trans html regular_minor_breaks html rescale html rescale_max html rescale_mid html rescale_none html rescale_pal html reverse_trans html scales-package html seq_gradient_pal html shape_pal html show_col html sqrt_trans html time_trans html train_continuous html train_discrete html trans_breaks html trans_format html trans_new html trans_range html unit_format html viridis_pal html yj_trans html zero_range html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) Making 'packages.html' ... done * installing *source* package 'bit64' ... ** package 'bit64' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bsearch.c -o bsearch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash64.c -o hash64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c integer64.c -o integer64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sort64.c -o sort64.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sortuse64.c -o sortuse64.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o bit64.so bsearch.o cache.o hash64.o init.o integer64.o sort64.o sortuse64.o -lm -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-bit64/00new/bit64/libs ** R ** data ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bit64' finding HTML links ... done all.equal.integer64 html as.character.integer64 html as.data.frame.integer64 html as.integer64.character html benchmark64.data html benchmark64 html bit64-package html finding level-2 HTML links ... done bit64S3 html c.integer64 html cache html cumsum.integer64 html duplicated.integer64 html extract.replace.integer64 html format.integer64 html hashcache html hashmap html identical.integer64 html is.sorted.integer64 html keypos html match.integer64 html optimizer64.data html plusclass html prank html qtile html ramsort.integer64 html rank.integer64 html rep.integer64 html runif64 html seq.integer64 html sort.integer64 html sortnut html sum.integer64 html table.integer64 html tiepos html unipos html unique.integer64 html xor.integer64 html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bit64) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'textshaping', 'reactlog', 'ragg' * installing *source* package 'textshaping' ... ** package 'textshaping' successfully unpacked and MD5 sums checked ** using staged installation Package fribidi was not found in the pkg-config search path. Perhaps you should add the directory containing `fribidi.pc' to the PKG_CONFIG_PATH environment variable Package 'fribidi', required by 'virtual:world', not found Using PKG_CFLAGS= Using PKG_LIBS=-lfreetype -lharfbuzz -lfribidi -lpng --------------------------- [ANTICONF] -------------------------------- Configuration failed to find the harfbuzz freetype2 fribidi library. Try installing: * deb: libharfbuzz-dev libfribidi-dev (Debian, Ubuntu, etc) * rpm: harfbuzz-devel fribidi-devel (Fedora, EPEL) * csw: libharfbuzz_dev libfribidi_dev (Solaris) * brew: harfbuzz fribidi (OSX) If harfbuzz freetype2 fribidi is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a harfbuzz freetype2 fribidi.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- :1:10: fatal error: hb-ft.h: No such file or directory compilation terminated. -------------------------------------------------------------------- ERROR: configuration failed for package 'textshaping' * removing '/opt/R/4.0.3/lib/R/library/textshaping' * installing *source* package 'reactlog' ... ** package 'reactlog' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reactlog' finding HTML links ... done reactlog_module html reactlog_show html reactlog_write html setReactLog html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactlog) Making 'packages.html' ... done * installing *source* package 'shiny' ... ** package 'shiny' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shiny' finding HTML links ... done MockShinySession html NS html Progress html absolutePanel html actionButton html applyInputHandlers html bindCache html bindEvent html bookmarkButton html bootstrapLib html bootstrapPage html brushOpts html brushedPoints html callModule html checkboxGroupInput html checkboxInput html clickOpts html column html conditionalPanel html createRenderFunction html createWebDependency html dateInput html dateRangeInput html debounce html deprecatedReactives html devmode html diskCache html domains html downloadButton html downloadHandler html enableBookmarking html exportTestValues html exprToFunction html fileInput html fillPage html fillRow html fixedPage html flowLayout html fluidPage html freezeReactiveValue html getCurrentOutputInfo html getCurrentTheme html getQueryString html headerPanel html helpText html htmlOutput html httpResponse html icon html inputPanel html insertTab html insertUI html installExprFunction html invalidateLater html is.reactivevalues html isRunning html isolate html knitr_methods html loadSupport html makeReactiveBinding html markOutputAttrs html markRenderFunction html markdown html maskReactiveContext html memoryCache html modalDialog html moduleServer html navbarPage html navlistPanel html numericInput html observe html observeEvent html onBookmark html onFlush html onStop html outputOptions html pageWithSidebar html parseQueryString html passwordInput html plotOutput html plotPNG html quoToFunction html radioButtons html reactive html reactiveConsole html reactiveFileReader html reactivePoll html reactiveTimer html reactiveVal html reactiveValues html reactiveValuesToList html reactlog html reexports html registerInputHandler html registerThemeDependency html finding level-2 HTML links ... done removeInputHandler html renderCachedPlot html renderDataTable html renderImage html renderPlot html renderPrint html renderTable html renderUI html repeatable html req html resourcePaths html restoreInput html runApp html runExample html runGadget html runTests html runUrl html safeError html selectInput html serverInfo html session html setBookmarkExclude html setSerializer html shiny-package html shiny.appobj html shinyApp html shinyAppTemplate html shinyDeprecated html shinyOptions html shinyServer html shinyUI html showBookmarkUrlModal html showModal html showNotification html showTab html sidebarLayout html sizeGrowthRatio html sliderInput html snapshotExclude html snapshotPreprocessInput html snapshotPreprocessOutput html splitLayout html stacktrace html stopApp html submitButton html tabPanel html tableOutput html tabsetPanel html testServer html textAreaInput html textInput html textOutput html titlePanel html updateActionButton html updateCheckboxGroupInput html updateCheckboxInput html updateDateInput html updateDateRangeInput html updateNumericInput html updateQueryString html updateRadioButtons html updateSelectInput html updateSliderInput html updateTabsetPanel html updateTextAreaInput html updateTextInput html urlModal html validate html varSelectInput html verticalLayout html viewer html wellPanel html withMathJax html withProgress html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) Making 'packages.html' ... done ERROR: dependency 'textshaping' is not available for package 'ragg' * removing '/opt/R/4.0.3/lib/R/library/ragg' Updating HTML index of packages in '.Library' Making 'packages.html' ... done * installing *source* package 'shinydashboard' ... ** package 'shinydashboard' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shinydashboard' finding HTML links ... done box html dashboardBody html dashboardHeader html dashboardPage html dashboardSidebar html dropdownMenu html dropdownMenuOutput html infoBox html menuItemOutput html menuOutput html messageItem html notificationItem html renderDropdownMenu html finding level-2 HTML links ... done renderMenu html renderValueBox html shinydashboard html sidebarMenu html sidebarMenuOutput html sidebarSearchForm html sidebarUserPanel html tabBox html tabItem html tabItems html tagAssert html Rd warning: /tmp/RtmpKPIAmJ/R.INSTALL2289189a5fdb/shinydashboard/man/tagAssert.Rd:17: file link 'uiOutput' in package 'shiny' does not exist and so has been treated as a topic taskItem html updateTabItems html validColors html validStatuses html valueBox html valueBoxOutput html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinydashboard) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box also installing the dependencies 'fresh', 'waiter', 'shinydashboardPlus', 'bs4Dash', 'argonR', 'argonDash', 'tablerDash' * installing *source* package 'fresh' ... ** package 'fresh' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fresh' finding HTML links ... done adminlte_color html adminlte_global html adminlte_sidebar html adminlte_vars html bs4Dash-sidebar html bs4dash_button html bs4dash_color html bs4dash_font html bs4dash_layout html bs4dash_status html bs4dash_vars html bs4dash_yiq html bs_vars html bs_vars_alert html bs_vars_badge html bs_vars_button html bs_vars_color html bs_vars_component html bs_vars_dropdown html bs_vars_file html bs_vars_font html bs_vars_global html bs_vars_input html bs_vars_modal html bs_vars_nav html bs_vars_navbar html bs_vars_panel html bs_vars_pills html bs_vars_progress html bs_vars_state html bs_vars_table html bs_vars_tabs html bs_vars_wells html create_pretty html create_theme html fresh html search_vars html search_vars_adminlte2 html search_vars_bs html search_vars_bs4dash html use_googlefont html use_pretty html use_theme html use_vars_template html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fresh) Making 'packages.html' ... done * installing *source* package 'waiter' ... ** package 'waiter' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'waiter' finding HTML links ... done construct html dot-check_session html dot-random_name html dot-theme_or_value html garcon html get_spinner_dependencies html hostess html hostessLoader html kit html pipe html preview_spinner html spinners html themes_to_js html transparent html use_steward html waiter html waiterClass html waiterOptionInternal html waiterTheme html waitress html waitressClass html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waiter) Making 'packages.html' ... done * installing *source* package 'bs4Dash' ... ** package 'bs4Dash' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bs4Dash' finding HTML links ... done attachmentBlock html bs4Accordion html bs4AccordionItem html bs4Alert html bs4Badge html bs4Box html bs4Callout html bs4Card html bs4Carousel html bs4CarouselItem html bs4DashBody html bs4DashControlbar html bs4DashControlbarItem html bs4DashControlbarMenu html bs4DashFooter html bs4DashGallery html bs4DashNavbar html bs4DashPage html bs4DashSidebar html bs4DropdownMenu html bs4DropdownMenuItem html bs4InfoBox html bs4InfoBoxOutput html bs4InsertTab html bs4Jumbotron html bs4ListGroup html bs4ListGroupItem html bs4Loading html bs4ProgressBar html bs4Quote html bs4RemoveTab html bs4Ribbon html bs4SidebarHeader html bs4SidebarMenu html bs4SidebarMenuItem html bs4SidebarMenuSubItem html bs4SidebarUserPanel html bs4SocialCard html bs4Sortable html bs4Stars html bs4TabCard html bs4TabItem html bs4TabItems html bs4TabPanel html bs4TabSetPanel html bs4Table html bs4TableItem html bs4TableItems html bs4Timeline html bs4TimelineEnd html bs4TimelineItem html bs4TimelineItemMedia html bs4TimelineLabel html bs4TimelineStart html bs4UserCard html bs4UserMenu html bs4ValueBox html bs4ValueBoxOutput html cardComment html cardPad html cardProfile html cardProfileItem html cardProfileItemList html column html descriptionBlock html dropdownDivider html dropdownItem html dropdownItemList html getAdminLTEColors html ionicon html renderbs4InfoBox html finding level-2 HTML links ... done renderbs4ValueBox html tagAssert html Rd warning: /tmp/RtmptrsuAx/R.INSTALL23df6efba45a/bs4Dash/man/tagAssert.Rd:17: file link 'uiOutput' in package 'shiny' does not exist and so has been treated as a topic updatebs4Card html updatebs4Controlbar html updatebs4ControlbarMenu html updatebs4Sidebar html updatebs4TabItems html updatebs4TabSetPanel html userMessage html userMessages html userPost html userPostMedia html userPostTagItem html userPostTagItems html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bs4Dash) Making 'packages.html' ... done * installing *source* package 'argonR' ... ** package 'argonR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'argonR' finding HTML links ... done NS html argonAlert html argonBadge html argonBlur html argonButton html argonCard html argonCarousel html argonCarouselItem html argonCascade html argonCascadeItem html argonColumn html argonContact html argonContainer html argonDropdown html argonDropdownItem html argonFooter html argonH1 html argonIcon html argonIconWrapper html argonImage html argonInstall html argonLead html argonMargin html argonModal html argonMuted html argonNavItem html argonNavMenu html argonNavbar html argonPadding html argonPage html argonPageTemplate html argonPagination html argonPaginationItem html argonPersp html argonProfile html argonProfileStat html argonProfileStats html argonProgress html argonQuote html argonRow html argonSection html argonSocialButton html argonTab html argonTabSet html argonTextColor html argonTooltip html argonUser html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argonR) Making 'packages.html' ... done * installing *source* package 'tablerDash' ... ** package 'tablerDash' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tablerDash' finding HTML links ... done tablerAlert html tablerAvatar html tablerAvatarList html tablerBlogCard html tablerCard html tablerDashBody html tablerDashFooter html tablerDashGallery html tablerDashNav html tablerDashPage html tablerDropdown html tablerDropdownItem html tablerIcon html tablerInfoCard html tablerList html tablerListItem html tablerMediaCard html tablerNavMenu html tablerNavMenuItem html tablerProfileCard html tablerProgress html tablerSocialLink html tablerSocialLinks html tablerStatCard html tablerStatus html tablerTabItem html tablerTabItems html tablerTable html tablerTableItem html tablerTag html tablerTagList html tablerTimeline html tablerTimelineItem html tagAssert html Rd warning: /tmp/Rtmp67AEvQ/R.INSTALL24c330760d76/tablerDash/man/tagAssert.Rd:17: file link 'uiOutput' in package 'shiny' does not exist and so has been treated as a topic *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tablerDash) Making 'packages.html' ... done * installing *source* package 'shinyWidgets' ... ** package 'shinyWidgets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shinyWidgets' finding HTML links ... done actionBttn html actionGroupButtons html addSpinner html airDatepicker html animateOptions html animations html appendVerticalTab html autonumericInput html awesomeCheckbox html awesomeCheckboxGroup html awesomeRadio html bootstrap-utils html checkboxGroupButtons html chooseSliderSkin html circleButton html closeSweetAlert html colorPickr html colorSelectorInput html demoAirDatepicker html demoNoUiSlider html demoNumericRange html downloadBttn html drop-menu-interaction html dropMenu html dropMenuOptions html dropdown html dropdownButton html execute_safely html formaNumericInputUpdate html formatNumericInput html html-dependencies html inputSweetAlert html knobInput html materialSwitch html multiInput html noUiSliderInput html numericInputIcon html numericRangeInput html pickerGroup-module html pickerInput html pickerOptions html prettyCheckbox html prettyCheckboxGroup html prettyRadioButtons html prettySwitch html prettyToggle html progress-bar html progressSweetAlert html radioGroupButtons html searchInput html selectizeGroup-module html setBackgroundColor html setBackgroundImage html setShadow html setSliderColor html shinyWidgets html shinyWidgetsGallery html show_toast html sliderTextInput html spectrumInput html stati-card html sweetalert-confirmation html sweetalert html switchInput html textInputAddon html textInputIcon html toggleDropdownButton html tooltipOptions html updateAirDateInput html updateAutonumericInput html updateAwesomeCheckbox html updateAwesomeCheckboxGroup html updateAwesomeRadio html updateCheckboxGroupButtons html updateKnobInput html updateMaterialSwitch html updateMultiInput html updateNoUiSliderInput html updateNumericInputIcon html updateNumericRangeInput html updatePickerInput html updatePrettyCheckbox html updatePrettyCheckboxGroup html updatePrettyRadioButtons html updatePrettySwitch html updatePrettyToggle html updateRadioGroupButtons html updateSearchInput html updateSliderTextInput html updateSpectrumInput html updateSwitchInput html updateTextInputIcon html updateVerticalTabsetPanel html useArgonDash html useBs4Dash html useShinydashboard html useShinydashboardPlus html useSweetAlert html useTablerDash html vertical-tab html wNumbFormat html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyWidgets) Making 'packages.html' ... done * installing *source* package 'shinydashboardPlus' ... ** package 'shinydashboardPlus' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'shinydashboardPlus' finding HTML links ... done accordion html appButton html attachmentBlock html blockQuote html box html boxLabel html boxProfile html boxSidebar html carousel html controlbar html dashboardBadge html dashboardFooter html dashboardHeader html dashboardLabel html dashboardPage html Rd warning: /tmp/RtmpFUeNz3/R.INSTALL25a769bb2b7e/shinydashboardPlus/man/dashboardPage.Rd:47: file link 'waiter_show_on_load' in package 'waiter' does not exist and so has been treated as a topic dashboardUser html dashboardUserItem html dropdownBlock html flipbox html loadingState html messageItem html navPills html notificationItem html productList html progressBar html renderUser html shinydashboardPlusGallery html sidebar html finding level-2 HTML links ... done skinSelector html skinSelectorItem html socialBox html socialButton html starBlock html tagAssert html Rd warning: /tmp/RtmpFUeNz3/R.INSTALL25a769bb2b7e/shinydashboardPlus/man/tagAssert.Rd:17: file link 'uiOutput' in package 'shiny' does not exist and so has been treated as a topic taskItem html timeline html todoList html userBox html userList html userMessage html userOutput html userPost html validColors html validStatuses html validStatusesPlus html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinydashboardPlus) Making 'packages.html' ... done * installing *source* package 'argonDash' ... ** package 'argonDash' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'argonDash' finding HTML links ... done argonAvatar html argonAvatars html argonDashBody html argonDashFooter html argonDashGallery html argonDashHeader html argonDashNavbar html argonDashPage html argonDashSidebar html argonDropNav html argonDropNavDivider html argonDropNavItem html finding level-2 HTML links ... done argonDropNavTitle html argonFooterItem html argonFooterMenu html argonInfoCard html argonSidebarDivider html argonSidebarHeader html argonSidebarItem html argonSidebarMenu html argonTabItem html argonTabItems html argonTable html argonTableItem html argonTableItems html tagAssert html Rd warning: /tmp/RtmpnpMPzF/R.INSTALL26191f107fd9/argonDash/man/tagAssert.Rd:17: file link 'uiOutput' in package 'shiny' does not exist and so has been treated as a topic *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argonDash) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'arrow', 'janeaustenr', 'nycflights13' * installing *source* package 'arrow' ... ** package 'arrow' successfully unpacked and MD5 sums checked ** using staged installation *** Proceeding without C++ dependencies ------------------------- NOTE --------------------------- See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries --------------------------------------------------------- ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array.cpp -o array.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array_to_vector.cpp -o array_to_vector.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arrowExports.cpp -o arrowExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c buffer.cpp -o buffer.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c chunkedarray.cpp -o chunkedarray.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compression.cpp -o compression.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compute.cpp -o compute.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c csv.cpp -o csv.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c datatype.cpp -o datatype.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c expression.cpp -o expression.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c feather.cpp -o feather.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c field.cpp -o field.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c filesystem.cpp -o filesystem.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c io.cpp -o io.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c json.cpp -o json.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c memorypool.cpp -o memorypool.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c message.cpp -o message.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c parquet.cpp -o parquet.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c py-to-r.cpp -o py-to-r.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c r_to_arrow.cpp -o r_to_arrow.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c runtimeinfo.cpp -o runtimeinfo.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_infer.cpp -o type_infer.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o arrow.so array.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o runtimeinfo.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-arrow/00new/arrow/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'arrow' finding HTML links ... done ArrayData html ChunkedArray html Codec html CsvReadOptions html CsvTableReader html DataType html Dataset html DictionaryType html Expression html FeatherReader html Field html FileFormat html FileInfo html FileSelector html FileSystem html FileWriteOptions html FixedWidthType html FragmentScanOptions html InputStream html MemoryPool html Message html MessageReader html OutputStream html ParquetArrowReaderProperties html ParquetFileReader html ParquetFileWriter html ParquetWriterProperties html Partitioning html RecordBatch html RecordBatchReader html RecordBatchWriter html Scalar html Scanner html Schema html Table html array html arrow-package html arrow_available html arrow_info html buffer html call_function html cast_options html codec_is_available html compression html copy_files html cpu_count html data-type html dataset_factory html default_memory_pool html dictionary html enums html flight_connect html flight_get html flight_put html hive_partition html install_arrow html install_pyarrow html list_compute_functions html list_flights html load_flight_server html make_readable_file html map_batches html match_arrow html mmap_create html mmap_open html open_dataset html read_delim_arrow html read_feather html read_ipc_stream html read_json_arrow html read_message html read_parquet html read_schema html reexports html s3_bucket html type html unify_schemas html value_counts html write_dataset html write_feather html write_ipc_stream html write_parquet html write_to_raw html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arrow) Making 'packages.html' ... done * installing *source* package 'janeaustenr' ... ** package 'janeaustenr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'janeaustenr' finding HTML links ... done austen_books html emma html janeaustenr html mansfieldpark html northangerabbey html persuasion html prideprejudice html sensesensibility html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (janeaustenr) Making 'packages.html' ... done * installing *source* package 'nycflights13' ... ** package 'nycflights13' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nycflights13' finding HTML links ... done airlines html airports html flights html planes html weather html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nycflights13) Making 'packages.html' ... done * installing *source* package 'sparklyr' ... ** package 'sparklyr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparklyr' finding HTML links ... done DBISparkResult-class html arrow_enabled_object html checkpoint_directory html collect html collect_from_rds html compile_package_jars html connection_config html connection_is_open html connection_spark_shinyapp html copy_to html copy_to.spark_connection html distinct html download_scalac html dplyr_hof html ensure html fill html filter html find_scalac html ft_binarizer html ft_bucketizer html ft_chisq_selector html ft_count_vectorizer html ft_dct html ft_elementwise_product html ft_feature_hasher html ft_hashing_tf html ft_idf html ft_imputer html ft_index_to_string html ft_interaction html ft_lsh html ft_lsh_utils html ft_max_abs_scaler html ft_min_max_scaler html ft_ngram html ft_normalizer html ft_one_hot_encoder html ft_one_hot_encoder_estimator html ft_pca html ft_polynomial_expansion html ft_quantile_discretizer html ft_r_formula html ft_regex_tokenizer html ft_robust_scaler html ft_standard_scaler html ft_stop_words_remover html ft_string_indexer html ft_tokenizer html ft_vector_assembler html ft_vector_indexer html ft_vector_slicer html ft_word2vec html full_join html get_spark_sql_catalog_implementation html grapes-greater-than-grapes html hive_context_config html hof_aggregate html hof_array_sort html hof_exists html hof_filter html hof_forall html hof_map_filter html hof_map_zip_with html hof_transform html hof_transform_keys html hof_transform_values html hof_zip_with html inner_join html invoke html invoke_method html jobj_class html jobj_set_param html join.tbl_spark html left_join html list_sparklyr_jars html livy_config html livy_install html livy_service html ml-constructors html ml-model-constructors html ml-params html ml-persistence html ml-transform-methods html ml-tuning html ml_add_stage html ml_aft_survival_regression html ml_als html ml_als_tidiers html ml_bisecting_kmeans html ml_call_constructor html ml_chisquare_test html ml_clustering_evaluator html ml_corr html ml_decision_tree html ml_default_stop_words html ml_evaluate html ml_evaluator html ml_feature_importances html ml_fpgrowth html ml_gaussian_mixture html ml_generalized_linear_regression html ml_glm_tidiers html ml_gradient_boosted_trees html ml_isotonic_regression html ml_isotonic_regression_tidiers html ml_kmeans html ml_lda html ml_lda_tidiers html ml_linear_regression html ml_linear_svc html ml_linear_svc_tidiers html ml_logistic_regression html ml_logistic_regression_tidiers html ml_model_data html ml_multilayer_perceptron_classifier html ml_multilayer_perceptron_tidiers html ml_naive_bayes html ml_naive_bayes_tidiers html ml_one_vs_rest html ml_pca_tidiers html ml_pipeline html ml_power_iteration html ml_random_forest html ml_stage html ml_standardize_formula html ml_summary html ml_survival_regression_tidiers html ml_tree_tidiers html ml_uid html ml_unsupervised_tidiers html mutate html na.replace html nest html pipe html pivot_longer html pivot_wider html print_jobj html quote_sql_name html random_string html reactiveSpark html reexports html registerDoSpark html register_extension html right_join html sdf-saveload html sdf-transform-methods html sdf_along html sdf_bind html sdf_broadcast html sdf_checkpoint html sdf_coalesce html sdf_collect html sdf_copy_to html sdf_crosstab html sdf_debug_string html sdf_describe html sdf_dim html sdf_distinct html sdf_drop_duplicates html sdf_expand_grid html sdf_fast_bind_cols html sdf_from_avro html sdf_is_streaming html sdf_last_index html sdf_len html sdf_num_partitions html sdf_partition_sizes html sdf_persist html sdf_pivot html sdf_project html sdf_quantile html sdf_random_split html sdf_read_column html sdf_register html sdf_repartition html sdf_residuals html sdf_sample html sdf_schema html sdf_separate_column html sdf_seq html sdf_sort html sdf_sql html sdf_to_avro html sdf_unnest_longer html sdf_unnest_wider html sdf_weighted_sample html sdf_with_sequential_id html sdf_with_unique_id html select html separate html spark-api html spark-connections html spark_adaptive_query_execution html spark_advisory_shuffle_partition_size html spark_apply html spark_apply_bundle html spark_apply_log html spark_auto_broadcast_join_threshold html spark_coalesce_initial_num_partitions html spark_coalesce_min_num_partitions html spark_coalesce_shuffle_partitions html spark_compilation_spec html spark_compile html spark_config html spark_config_exists html spark_config_kubernetes html spark_config_packages html spark_config_settings html spark_config_value html spark_configuration html spark_connection-class html spark_connection html spark_connection_find html spark_context_config html spark_dataframe html spark_default_compilation_spec html spark_default_version html spark_dependency html spark_dependency_fallback html spark_extension html spark_get_java html spark_home_dir html spark_home_set html spark_install html spark_install_sync html spark_jobj-class html spark_jobj html spark_load_table html spark_log html spark_pipeline_stage html spark_read html spark_read_avro html spark_read_csv html spark_read_delta html spark_read_jdbc html spark_read_json html spark_read_libsvm html spark_read_orc html spark_read_parquet html spark_read_source html spark_read_table html spark_read_text html spark_save_table html spark_table_name html spark_version html spark_version_from_home html spark_versions html spark_web html spark_write html spark_write_avro html spark_write_csv html spark_write_delta html spark_write_jdbc html spark_write_json html spark_write_orc html spark_write_parquet html spark_write_rds html spark_write_source html spark_write_table html spark_write_text html sql-transformer html src_databases html stream_find html stream_generate_test html stream_id html stream_lag html stream_name html stream_read_csv html stream_read_delta html stream_read_json html stream_read_kafka html stream_read_orc html stream_read_parquet html stream_read_socket html stream_read_text html stream_render html stream_stats html stream_stop html stream_trigger_continuous html stream_trigger_interval html stream_view html stream_watermark html stream_write_console html stream_write_csv html stream_write_delta html stream_write_json html stream_write_kafka html stream_write_memory html stream_write_orc html stream_write_parquet html stream_write_text html sub-.tbl_spark html tbl_cache html tbl_change_db html tbl_uncache html transform_sdf html unite html unnest html worker_spark_apply_unbundle html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparklyr) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Attaching package: 'sparklyr' The following object is masked from 'package:stats': filter * installing *source* package 'stringr' ... ** package 'stringr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stringr' finding HTML links ... done case html invert_match html modifiers html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/modifiers.Rd:102: file link 'stringi-search-boundaries' in package 'stringi' does not exist and so has been treated as a topic pipe html str_c html str_conv html str_count html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_count.Rd:16: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_detect html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_detect.Rd:16: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_dup html str_extract html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_extract.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_flatten html str_glue html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_glue.Rd:29: file link 'glue_data' in package 'glue' does not exist and so has been treated as a topic str_interp html str_length html str_locate html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_locate.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_match html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_match.Rd:17: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_order html str_pad html str_remove html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_remove.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_replace html finding level-2 HTML links ... done Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_replace.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_replace_na html str_split html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_split.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_starts html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_starts.Rd:20: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_sub html str_subset html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_subset.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_trim html str_trunc html str_view html Rd warning: /tmp/RtmpHamFIM/R.INSTALL295c62a65170/stringr/man/str_view.Rd:19: file link 'stringi-search-regex' in package 'stringi' does not exist and so has been treated as a topic str_wrap html stringr-data html stringr-package html word html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringr) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependency 'diffviewer' * installing *source* package 'diffviewer' ... ** package 'diffviewer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'diffviewer' finding HTML links ... done visual_diff html visual_diff_output html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffviewer) Making 'packages.html' ... done * installing *source* package 'testthat' ... ** package 'testthat' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'testthat' finding HTML links ... done CheckReporter html DebugReporter html FailReporter html JunitReporter html ListReporter html LocationReporter html MinimalReporter html MultiReporter html ProgressReporter html RStudioReporter html Reporter html SilentReporter html StopReporter html SummaryReporter html TapReporter html TeamcityReporter html auto_test html auto_test_package html capture_condition html capture_output html compare html compare_state html comparison-expectations html context html context_start_file html default_reporter html describe html dir_state html equality-expectations html evaluate_promise html expect html expect_equivalent html expect_error html expect_invisible html expect_is html expect_known_output html expect_length html expect_less_than html expect_match html expect_named html expect_null html expect_output html expect_output_file html expect_reference html expect_setequal html expect_silent html expect_snapshot html expect_snapshot_file html expect_success html expect_that html expect_vector html expectation html fail html find_reporter html find_test_scripts html inheritance-expectations html is_informative_error html is_testing html local_edition html local_snapshotter html local_test_context html local_test_directory html logical-expectations html make_expectation html not html oldskool html quasi_label html reexports html reporter-accessors html run_cpp_tests html safe_digest html skip html snapshot_accept html source_file html takes_less_than html teardown html teardown_env html test_dir html test_env html test_examples html test_file html test_package html test_path html test_that html testthat-package html testthat_examples html testthat_results html try_again html use_catch html verify_output html watch html with_mock html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'fastmatch', 'ParamHelpers', 'BBmisc', 'parallelMap', 'mlr', 'RANN', 'ROSE', 'unbalanced' * installing *source* package 'fastmatch' ... ** package 'fastmatch' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ctapply.c -o ctapply.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fasthash.c -o fasthash.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fastmatch.c -o fastmatch.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o fastmatch.so ctapply.o fasthash.o fastmatch.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-fastmatch/00new/fastmatch/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fastmatch' finding HTML links ... done coalesce html ctapply html fmatch html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmatch) Making 'packages.html' ... done * installing *source* package 'BBmisc' ... ** package 'BBmisc' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c getMaxColRowIndex.c -o getMaxColRowIndex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c getMaxIndex.c -o getMaxIndex.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c itostr.c -o itostr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c which_first.c -o which_first.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o BBmisc.so getMaxColRowIndex.o getMaxIndex.o init.o itostr.o which_first.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-BBmisc/00new/BBmisc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BBmisc' finding HTML links ... done addClasses html argsAsNamedList html asMatrixCols html asQuoted html binPack html btwn html cFactor html capitalizeStrings html catf html checkArg html checkListElementClass html chunk html clipString html coalesce html collapse html collapsef html computeMode html convertDataFrameCols html convertInteger html convertIntegers html convertListOfRowsToDataFrame html convertMatrixType html convertRowsToList html convertToShortString html dapply html deprecated html do.call2 html dropNamed html ensureVector html explode html extractSubList html filterNull html getAttributeNames html getClass1 html getFirst html getMaxIndex html getMaxIndexOfRows html getOperatingSystem html getRelativePath html getUnixTime html getUsedFactorLevels html hasAttributes html insert html is.error html Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/is.error.Rd:12: file link 'tryCatch' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/is.error.Rd:13: file link 'simpleError' in package 'base' does not exist and so has been treated as a topic isDirectory html isEmptyDirectory html isExpensiveExampleOk html isFALSE html isProperlyNamed html isScalarNA html isScalarValue html isSubset html isSuperset html isValidName html itostr html lib html load2 html lsort html makeDataFrame html makeFileCache html makeProgressBar html makeS3Obj html makeSimpleFileLogger html mapValues html Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/mapValues.Rd:24: file link 'gsub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/mapValues.Rd:27: file link 'gsub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/mapValues.Rd:30: file link 'gsub' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/mapValues.Rd:40: file link 'gsub' in package 'base' does not exist and so has been treated as a topic messagef html namedList html names2 html nin html normalize html optimizeSubInts html pause html printHead html printStrToChar html printToChar html rangeVal html requirePackages html Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/requirePackages.Rd:13: file link 'require' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/requirePackages.Rd:14: file link 'requireNamespace' in package 'base' does not exist and so has been treated as a topic rowLapply html save2 html seq_row html Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/seq_row.Rd:21: file link 'seq_len' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/seq_row.Rd:15: file link 'ncol' in package 'base' does not exist and so has been treated as a topic setAttribute html setClasses html setRowNames html setValue html sortByCol html splitPath html splitTime html stopf html strrepeat html suppressAll html symdiff html system3 html toRangeStr html vlapply html Rd warning: /tmp/RtmpXObUbA/R.INSTALL2b5d4d34a2e1/BBmisc/man/vlapply.Rd:33: file link 'vapply' in package 'base' does not exist and so has been treated as a topic warningf html which.first html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BBmisc) Making 'packages.html' ... done * installing *source* package 'RANN' ... ** package 'RANN' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c ANN.cpp -o ANN.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c NN.cc -o NN.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c bd_pr_search.cpp -o bd_pr_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c bd_search.cpp -o bd_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c bd_tree.cpp -o bd_tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c brute.cpp -o brute.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_dump.cpp -o kd_dump.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_pr_search.cpp -o kd_pr_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_search.cpp -o kd_search.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_split.cpp -o kd_split.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_tree.cpp -o kd_tree.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -fpic -g -O2 -c kd_util.cpp -o kd_util.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RANN.so ANN.o NN.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-RANN/00new/RANN/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RANN' finding HTML links ... done RANN-package html nn2 html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RANN) Making 'packages.html' ... done * installing *source* package 'ROSE' ... ** package 'ROSE' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ROSE' finding HTML links ... done ROSE-package html ROSE html ROSE.eval html accuracy.meas html hacide html ovun.sample html roc.ROSE html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROSE) Making 'packages.html' ... done * installing *source* package 'ParamHelpers' ... ** package 'ParamHelpers' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c c_dfRowsToList.c -o c_dfRowsToList.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o ParamHelpers.so c_dfRowsToList.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-ParamHelpers/00new/ParamHelpers/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ParamHelpers' finding HTML links ... done LearnerParam html OptPath html Param html addOptPathEl html as.data.frame.OptPathDF html checkParamSet html convertParamSetToIrace html dfRowsToList html discreteNameToValue html discreteValueToName html dropParams html evaluateParamExpressions html Rd warning: /tmp/RtmpaZb65i/R.INSTALL2d0d534f6a95/ParamHelpers/man/evaluateParamExpressions.Rd:10: file link 'ParamSet' in package 'ParamHelpers' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpaZb65i/R.INSTALL2d0d534f6a95/ParamHelpers/man/evaluateParamExpressions.Rd:21: file link 'ParamSet' in package 'ParamHelpers' does not exist and so has been treated as a topic filterParams html generateDesign html generateDesignOfDefaults html generateGridDesign html generateRandomDesign html getDefaults html getLower html getOptPathBestIndex html getOptPathCol html getOptPathCols html getOptPathDOB html getOptPathEOL html getOptPathEl html getOptPathErrorMessages html getOptPathExecTimes html getOptPathLength html getOptPathParetoFront html getOptPathX html getOptPathY html getParamIds html getParamLengths html getParamNr html getParamSet html Rd warning: /tmp/RtmpaZb65i/R.INSTALL2d0d534f6a95/ParamHelpers/man/getParamSet.Rd:14: file link 'ParamSet' in package 'ParamHelpers' does not exist and so has been treated as a topic getParamTypeCounts html getParamTypes html getRequirements html getTypeStrings html hasExpression html Rd warning: /tmp/RtmpaZb65i/R.INSTALL2d0d534f6a95/ParamHelpers/man/hasExpression.Rd:10: file link 'ParamSet' in package 'ParamHelpers' does not exist and so has been treated as a topic hasFiniteBoxConstraints html hasForbidden html hasRequires html hasTrafo html hasType html isEmpty html isFeasible html isForbidden html isRequiresOk html isSpecialValue html isType html isTypeString html isVector html listToDfOneRow html makeParamSet html paramValueToString html plotEAF html plotOptPath html plotYTraces html removeMissingValues html renderOptPathPlot html renderYTraces html repairPoint html sampleValue html sampleValues html setOptPathElDOB html setOptPathElEOL html setValueCNames html trafoOptPath html trafoValue html updateParVals html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ParamHelpers) Making 'packages.html' ... done * installing *source* package 'parallelMap' ... ** package 'parallelMap' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'parallelMap' finding HTML links ... done parallelExport html parallelGetOptions html parallelGetRegisteredLevels html parallelLapply html parallelLibrary html parallelMap html parallelRegisterLevels html Rd warning: /tmp/Rtmp9vK2Ss/R.INSTALL2d9436b976e4/parallelMap/man/parallelRegisterLevels.Rd:24: file link '.onLoad' in package 'base' does not exist and so has been treated as a topic parallelSource html parallelStart html Rd warning: /tmp/Rtmp9vK2Ss/R.INSTALL2d9436b976e4/parallelMap/man/parallelStart.Rd:157: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp9vK2Ss/R.INSTALL2d9436b976e4/parallelMap/man/parallelStart.Rd:159: file link 'mcmapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp9vK2Ss/R.INSTALL2d9436b976e4/parallelMap/man/parallelStart.Rd:180: file link 'clusterMap' in package 'parallel' does not exist and so has been treated as a topic parallelStop html Rd warning: /tmp/Rtmp9vK2Ss/R.INSTALL2d9436b976e4/parallelMap/man/parallelStop.Rd:16: file link 'stopCluster' in package 'parallel' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelMap) Making 'packages.html' ... done * installing *source* package 'mlr' ... ** package 'mlr' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c smote.c -o smote.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o mlr.so init.o smote.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-mlr/00new/mlr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mlr' finding HTML links ... done Aggregation html BenchmarkResult html ClassifTask html ClusterTask html ConfusionMatrix html CostSensTask html FailureModel html FeatSelControl html FeatSelResult html LearnerProperties html MeasureProperties html MultilabelTask html Prediction html RLearner html RegrTask html ResamplePrediction html ResampleResult html SurvTask html Task html TaskDesc html TuneControl html TuneMultiCritControl html finding level-2 HTML links ... done TuneMultiCritResult html TuneResult html addRRMeasure html aggregations html agri.task html analyzeFeatSelResult html asROCRPrediction html batchmark html bc.task html benchmark html bh.task html cache_helpers html calculateConfusionMatrix html calculateROCMeasures html capLargeValues html changeData html checkLearner html checkPredictLearnerOutput html configureMlr html convertBMRToRankMatrix html convertMLBenchObjToTask html costiris.task html createDummyFeatures html createSpatialResamplingPlots html crossover html downsample html dropFeatures html estimateRelativeOverfitting html estimateResidualVariance html extractFDABsignal html extractFDADTWKernel html extractFDAFPCA html extractFDAFeatures html extractFDAFourier html extractFDAMultiResFeatures html extractFDATsfeatures html extractFDAWavelets html filterFeatures html friedmanPostHocTestBMR html friedmanTestBMR html fuelsubset.task html generateCalibrationData html generateCritDifferencesData html generateFeatureImportanceData html generateFilterValuesData html generateHyperParsEffectData html generateLearningCurveData html generatePartialDependenceData html generateThreshVsPerfData html getBMRAggrPerformances html getBMRFeatSelResults html getBMRFilteredFeatures html getBMRLearnerIds html getBMRLearnerShortNames html getBMRLearners html getBMRMeasureIds html getBMRMeasures html getBMRModels html getBMRPerformances html getBMRPredictions html getBMRTaskDescriptions html getBMRTaskDescs html getBMRTaskIds html getBMRTuneResults html getCaretParamSet html getClassWeightParam html getConfMatrix html getDefaultMeasure html getFailureModelDump html getFailureModelMsg html getFeatSelResult html getFeatureImportance html getFeatureImportanceLearner html getFilteredFeatures html getFunctionalFeatures html getHomogeneousEnsembleModels html getHyperPars html getLearnerId html getLearnerModel html getLearnerNote html getLearnerPackages html getLearnerParVals html getLearnerParamSet html getLearnerPredictType html getLearnerShortName html getLearnerType html getMlrOptions html getMultilabelBinaryPerformances html getNestedTuneResultsOptPathDf html getNestedTuneResultsX html getOOBPreds html getOOBPredsLearner html getParamSet html getPredictionDump html getPredictionProbabilities html getPredictionResponse html getPredictionTaskDesc html getProbabilities html getRRDump html getRRPredictionList html getRRPredictions html getRRTaskDesc html getRRTaskDescription html getResamplingIndices html getStackedBaseLearnerPredictions html getTaskClassLevels html getTaskCosts html getTaskData html getTaskDesc html getTaskDescription html getTaskFeatureNames html getTaskFormula html getTaskId html getTaskNFeats html getTaskSize html getTaskTargetNames html getTaskTargets html getTaskType html getTuneResult html getTuneResultOptPath html gunpoint.task html hasFunctionalFeatures html hasProperties html helpLearner html helpLearnerParam html imputations html impute html iris.task html isFailureModel html joinClassLevels html learnerArgsToControl html learners html listFilterEnsembleMethods html listFilterMethods html listLearnerProperties html listLearners html listMeasureProperties html listMeasures html listTaskTypes html lung.task html makeAggregation html makeBaggingWrapper html makeBaseWrapper html makeChainModel html makeClassificationViaRegressionWrapper html makeConstantClassWrapper html makeCostMeasure html makeCostSensClassifWrapper html makeCostSensRegrWrapper html makeCostSensWeightedPairsWrapper html makeCustomResampledMeasure html makeDownsampleWrapper html makeDummyFeaturesWrapper html makeExtractFDAFeatMethod html makeExtractFDAFeatsWrapper html makeFeatSelWrapper html makeFilter html makeFilterEnsemble html makeFilterWrapper html makeFixedHoldoutInstance html makeFunctionalData html makeImputeMethod html makeImputeWrapper html makeLearner html makeLearners html makeMeasure html makeModelMultiplexer html makeModelMultiplexerParamSet html makeMulticlassWrapper html makeMultilabelBinaryRelevanceWrapper html makeMultilabelClassifierChainsWrapper html makeMultilabelDBRWrapper html makeMultilabelNestedStackingWrapper html makeMultilabelStackingWrapper html makeOverBaggingWrapper html makePreprocWrapper html makePreprocWrapperCaret html makeRLearner.classif.fdausc.glm html makeRLearner.classif.fdausc.kernel html makeRLearner.classif.fdausc.np html makeRemoveConstantFeaturesWrapper html makeResampleDesc html makeResampleInstance html makeSMOTEWrapper html makeStackedLearner html makeTaskDesc html makeTaskDescInternal html makeTuneControlCMAES html makeTuneControlDesign html makeTuneControlGenSA html makeTuneControlGrid html makeTuneControlIrace html makeTuneControlMBO html makeTuneControlRandom html makeTuneWrapper html makeUndersampleWrapper html makeWeightedClassesWrapper html makeWrappedModel html measures html mergeBenchmarkResults html mergeSmallFactorLevels html mlr-package html mlrFamilies html mtcars.task html normalizeFeatures html oversample html parallelization html performance html phoneme.task html pid.task html plotBMRBoxplots html plotBMRRanksAsBarChart html plotBMRSummary html plotCalibration html plotCritDifferences html plotFilterValues html plotHyperParsEffect html plotLearnerPrediction html plotLearningCurve html plotPartialDependence html plotROCCurves html plotResiduals html plotThreshVsPerf html plotTuneMultiCritResult html predict.WrappedModel html predictLearner html reduceBatchmarkResults html reextractFDAFeatures html reimpute html removeConstantFeatures html removeHyperPars html resample html selectFeatures html setAggregation html setHyperPars html setHyperPars2 html setId html setLearnerId html setMeasurePars html setPredictThreshold html setPredictType html setThreshold html simplifyMeasureNames html smote html sonar.task html spam.task html spatial.task html subsetTask html summarizeColumns html summarizeLevels html train html trainLearner html tuneParams html tuneParamsMultiCrit html tuneThreshold html wpbc.task html yeast.task html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr) Making 'packages.html' ... done * installing *source* package 'unbalanced' ... ** package 'unbalanced' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'unbalanced' finding HTML links ... done ubBalance html ubCNN html ubENN html ubIonosphere html ubNCL html ubOSS html ubOver html ubRacing html ubSMOTE html ubSmoteExs html ubTomek html ubUnder html unbalanced-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unbalanced) Making 'packages.html' ... done * installing *source* package 'themis' ... ** package 'themis' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning message: In system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'themis' finding HTML links ... done circle_example html reexports html required_pkgs.step html step_adasyn html finding level-2 HTML links ... done step_bsmote html step_downsample html step_nearmiss html step_rose html step_smote html step_tomek html step_upsample html themis-package html tunable.step_adasyn html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (themis) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Loading required package: recipes Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Attaching package: 'recipes' The following object is masked from 'package:stringr': fixed The following object is masked from 'package:stats': step Registered S3 methods overwritten by 'themis': method from bake.step_downsample recipes bake.step_upsample recipes prep.step_downsample recipes prep.step_upsample recipes tidy.step_downsample recipes tidy.step_upsample recipes tunable.step_downsample recipes tunable.step_upsample recipes Attaching package: 'themis' The following objects are masked from 'package:recipes': step_downsample, step_upsample Warning messages: 1: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'textshaping' had non-zero exit status 2: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'ragg' had non-zero exit status 3: In system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 STEP 27: RUN Rscript --no-save ai-ml-packages.R tidymodels tidytext tidyverse timetk xgboost also installing the dependencies 'lhs', 'DiceDesign', 'GPfit', 'hardhat', 'conflicted', 'dials', 'infer', 'tune', 'workflows', 'workflowsets', 'yardstick' * installing *source* package 'lhs' ... ** package 'lhs' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c COrthogonalArray.cpp -o COrthogonalArray.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c ak3.cpp -o ak3.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c akconst.cpp -o akconst.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c akn.cpp -o akn.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c construct.cpp -o construct.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c galois.cpp -o galois.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c geneticLHS.cpp -o geneticLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gfields.cpp -o gfields.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c improvedLHS.cpp -o improvedLHS.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c lhs_r.cpp -o lhs_r.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c lhs_r_utilities.cpp -o lhs_r_utilities.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c maximinLHS.cpp -o maximinLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c oa.cpp -o oa.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c oaLHS.cpp -o oaLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c oa_r.cpp -o oa_r.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c oa_r_utils.cpp -o oa_r_utils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c oalhs_r.cpp -o oalhs_r.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c optSeededLHS.cpp -o optSeededLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c optimumLHS.cpp -o optimumLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c primes.cpp -o primes.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c randomLHS.cpp -o randomLHS.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c runif.cpp -o runif.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rutils.cpp -o rutils.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DRCOMPILE -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c utilityLHS.cpp -o utilityLHS.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lhs.so COrthogonalArray.o ak3.o akconst.o akn.o construct.o galois.o geneticLHS.o gfields.o improvedLHS.o init.o lhs_r.o lhs_r_utilities.o maximinLHS.o oa.o oaLHS.o oa_r.o oa_r_utils.o oalhs_r.o optSeededLHS.o optimumLHS.o primes.o randomLHS.o runif.o rutils.o utilityLHS.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lhs/00new/lhs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lhs' finding HTML links ... done augmentLHS html createAddelKemp html createAddelKemp3 html createAddelKempN html createBose html createBoseBush html createBoseBushl html createBush html createBusht html create_oalhs html geneticLHS html improvedLHS html lhs-package html maximinLHS html oa_to_oalhs html optAugmentLHS html optSeededLHS html optimumLHS html randomLHS html runifint html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lhs) Making 'packages.html' ... done * installing *source* package 'DiceDesign' ... ** package 'DiceDesign' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c C_StraussDesign.c -o C_StraussDesign.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c C_rss.c -o C_rss.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c DiceDesign_init.c -o DiceDesign_init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o DiceDesign.so C_StraussDesign.o C_rss.o DiceDesign_init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-DiceDesign/00new/DiceDesign/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DiceDesign' finding HTML links ... done DiceDesign-package html NOLHDRdesigns html NOLHdesigns html OA131 html OA131_scrambled html coverage html discrepESE_LHS html discrepSA_LHS html discrepancyCriteria html dmaxDesign html factDesign html faureprimeDesign html lhsDesign html maximinESE_LHS html maximinSA_LHS html meshRatio html mindist html mstCriteria html nolhDesign html nolhdrDesign html olhDesign html phiP html rss2d html rss3d html runif.faure html scaleDesign html straussDesign html unif.test.quantile html unif.test.statistic html unscaleDesign html wspDesign html xDRDN html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiceDesign) Making 'packages.html' ... done * installing *source* package 'hardhat' ... ** package 'hardhat' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hardhat' finding HTML links ... done add_intercept_column html contr_one_hot html default_formula_blueprint html default_recipe_blueprint html default_xy_blueprint html delete_response html extract_ptype html forge html get_data_classes html get_levels html hardhat-example-data html hardhat-package html is_blueprint html model_frame html model_matrix html model_offset html modeling-package html mold html new-blueprint html new-default-blueprint html new_model html refresh_blueprint html run_mold html scream html shrink html spruce html standardize html update_blueprint html validate_column_names html validate_no_formula_duplication html validate_outcomes_are_binary html validate_outcomes_are_factors html validate_outcomes_are_numeric html validate_outcomes_are_univariate html validate_prediction_size html validate_predictors_are_numeric html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hardhat) Making 'packages.html' ... done * installing *source* package 'conflicted' ... ** package 'conflicted' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'conflicted' finding HTML links ... done conflict_prefer html conflict_scout html conflicted-package html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conflicted) Making 'packages.html' ... done * installing *source* package 'infer' ... ** package 'infer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'infer' finding HTML links ... done calculate html chisq_stat html chisq_test html deprecated html generate html get_confidence_interval html get_p_value html gss html hypothesize html infer html pipe html print.infer html prop_test html rep_sample_n html shade_confidence_interval html shade_p_value html specify html t_stat html t_test html visualize html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (infer) Making 'packages.html' ... done * installing *source* package 'yardstick' ... ** package 'yardstick' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mcc-multiclass.c -o mcc-multiclass.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pr-curve.c -o pr-curve.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o yardstick.so init.o mcc-multiclass.o pr-curve.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-yardstick/00new/yardstick/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'yardstick' finding HTML links ... done accuracy html average_precision html bal_accuracy html ccc html classification_cost html conf_mat html detection_prevalence html developer-helpers html f_meas html gain_capture html gain_curve html hpc_cv html huber_loss html huber_loss_pseudo html iic html j_index html kap html lift_curve html mae html mape html mase html mcc html metric_set html metric_summarizer html metric_tweak html metric_vec_template html metrics html mn_log_loss html mpe html msd html new-metric html npv html pathology html ppv html pr_auc html pr_curve html precision html recall html reexports html rmse html roc_auc html roc_aunp html roc_aunu html roc_curve html rpd html rpiq html rsq html rsq_trad html sens html smape html solubility_test html spec html summary.conf_mat html two_class_example html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yardstick) Making 'packages.html' ... done * installing *source* package 'GPfit' ... ** package 'GPfit' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GPfit' finding HTML links ... done GP_deviance html GP_fit html GPfit-package html corr_matrix html plot html predict html print.GP html scale_norm html sig_invb html summary.GP html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GPfit) Making 'packages.html' ... done * installing *source* package 'dials' ... ** package 'dials' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices finding HTML links ... converting help for package 'dials' done Chicago html Laplace html activation html all_neighbors html c5_parameters html cost html cubist_parameters html deg_free html degree html dials-package html dist_power html dropout html earth_parameters html encode_unit html finalize html freq_cut html grid_max_entropy html grid_regular html learn_rate html max_times html max_tokens html min_dist html min_unique html mixture html mtry html neighbors html new-param html num_breaks html num_comp html num_tokens html over_ratio html parameters html parameters_constr html penalty html predictor_prop html prune_method html pull_dials_object html randomForest_parameters html range_validate html ranger_parameters html rbf_sigma html smoothness html surv_dist html texthash html threshold html token html trees html type_sum.param html unknown html update.parameters html value_validate html weight html weight_func html weight_scheme html window_size html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dials) Making 'packages.html' ... done * installing *source* package 'workflows' ... ** package 'workflows' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'workflows' finding HTML links ... done add_formula html add_model html add_recipe html add_variables html augment.workflow html control_workflow html fit-workflow html glance.workflow html is_trained_workflow html predict-workflow html tidy.workflow html workflow-butcher html workflow-extractors html workflow html workflows-internals html workflows-package html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (workflows) Making 'packages.html' ... done * installing *source* package 'tune' ... ** package 'tune' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'tune' finding HTML links ... done augment.tune_results html autoplot.tune_results html collect_predictions html conf_mat_resampled html control_bayes html control_grid html coord_obs_pred html empty_ellipses html example_ames_knn html expo_decay html extract_recipe html filter_parameters html finalize_model html fit_resamples html last_fit html load_pkgs html merge.recipe html message_wrap html min_grid html outcome_names html parameters.workflow html prob_improve html reexports html required_pkgs html show_best html tunable html tune html tune_accessor html tune_args html tune_bayes html tune_grid html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (tune) Making 'packages.html' ... done * installing *source* package 'workflowsets' ... ** package 'workflowsets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'workflowsets' finding HTML links ... done as_workflow_set html autoplot.workflow_set html collect_metrics.workflow_set html comment_add html leave_var_out_formulas html option_add html option_list html pull_workflow_set_result html rank_results html reexports html two_class_set html workflow_map html workflow_set html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (workflowsets) Making 'packages.html' ... done * installing *source* package 'tidymodels' ... ** package 'tidymodels' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'tidymodels' finding HTML links ... done pkg_deps html tag_show html tidymodels-package html tidymodels_conflicts html tidymodels_packages html tidymodels_prefer html tidymodels_update html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (tidymodels) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down -- Attaching packages -------------------------------------- tidymodels 0.1.3 -- v broom 0.7.6 v recipes 0.1.16 v dials 0.0.9 v rsample 0.1.0 v dplyr 1.0.6 v tibble 3.1.1 v ggplot2 3.3.3 v tidyr 1.1.3 v infer 0.5.4 v tune 0.1.5 v modeldata 0.1.0 v workflows 0.2.2 v parsnip 0.1.5 v workflowsets 0.0.2 v purrr 0.3.4 v yardstick 0.0.8 -- Conflicts ----------------------------------------- tidymodels_conflicts() -- x purrr::discard() masks scales::discard() x dplyr::filter() masks stats::filter() x dplyr::lag() masks stats::lag() x recipes::step() masks stats::step() * Use tidymodels_prefer() to resolve common conflicts. also installing the dependencies 'SnowballC', 'slam', 'RcppParallel', 'freetypeharfbuzz', 'lda', 'ISOcodes', 'tokenizers', 'tm', 'quanteda', 'wordcloud', 'topicmodels', 'NLP', 'vdiffr', 'mallet', 'stm', 'textdata', 'stopwords' * installing *source* package 'SnowballC' ... ** package 'SnowballC' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SnowballC_init.c -o SnowballC_init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c libstemmer_utf8.c -o libstemmer_utf8.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem.c -o stem.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_arabic.c -o stem_UTF_8_arabic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_basque.c -o stem_UTF_8_basque.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_catalan.c -o stem_UTF_8_catalan.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_danish.c -o stem_UTF_8_danish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_dutch.c -o stem_UTF_8_dutch.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_english.c -o stem_UTF_8_english.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_finnish.c -o stem_UTF_8_finnish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_french.c -o stem_UTF_8_french.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_german.c -o stem_UTF_8_german.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_greek.c -o stem_UTF_8_greek.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_hindi.c -o stem_UTF_8_hindi.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_hungarian.c -o stem_UTF_8_hungarian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_indonesian.c -o stem_UTF_8_indonesian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_irish.c -o stem_UTF_8_irish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_italian.c -o stem_UTF_8_italian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_lithuanian.c -o stem_UTF_8_lithuanian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_nepali.c -o stem_UTF_8_nepali.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_norwegian.c -o stem_UTF_8_norwegian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_porter.c -o stem_UTF_8_porter.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_portuguese.c -o stem_UTF_8_portuguese.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_romanian.c -o stem_UTF_8_romanian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_russian.c -o stem_UTF_8_russian.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_spanish.c -o stem_UTF_8_spanish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_swedish.c -o stem_UTF_8_swedish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_tamil.c -o stem_UTF_8_tamil.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stem_UTF_8_turkish.c -o stem_UTF_8_turkish.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utilities.c -o utilities.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o SnowballC.so SnowballC_init.o api.o libstemmer_utf8.o stem.o stem_UTF_8_arabic.o stem_UTF_8_basque.o stem_UTF_8_catalan.o stem_UTF_8_danish.o stem_UTF_8_dutch.o stem_UTF_8_english.o stem_UTF_8_finnish.o stem_UTF_8_french.o stem_UTF_8_german.o stem_UTF_8_greek.o stem_UTF_8_hindi.o stem_UTF_8_hungarian.o stem_UTF_8_indonesian.o stem_UTF_8_irish.o stem_UTF_8_italian.o stem_UTF_8_lithuanian.o stem_UTF_8_nepali.o stem_UTF_8_norwegian.o stem_UTF_8_porter.o stem_UTF_8_portuguese.o stem_UTF_8_romanian.o stem_UTF_8_russian.o stem_UTF_8_spanish.o stem_UTF_8_swedish.o stem_UTF_8_tamil.o stem_UTF_8_turkish.o utilities.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-SnowballC/00new/SnowballC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SnowballC' finding HTML links ... done getStemLanguages html wordStem html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SnowballC) Making 'packages.html' ... done * installing *source* package 'slam' ... ** package 'slam' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c apply.c -o apply.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dll.c -o dll.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c grouped.c -o grouped.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sparse.c -o sparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c util.c -o util.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o slam.so apply.o dll.o grouped.o sparse.o util.o -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-slam/00new/slam/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'slam' finding HTML links ... done abind html apply html array html crossprod html foreign html matrix html norms html options html rollup html sums html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slam) Making 'packages.html' ... done * installing *source* package 'RcppParallel' ... ** package 'RcppParallel' successfully unpacked and MD5 sums checked ** using staged installation ** preparing to configure package 'RcppParallel' ... *** configured file: 'src/Makevars.in' => 'src/Makevars' ** finished configure for package 'RcppParallel' ** libs (tbb) Building TBB using bundled sources ... make[1]: Entering directory '/tmp/RtmpivzaIa/R.INSTALL37615d4a941d/RcppParallel/src/tbb/src' OS: linux arch=intel64 compiler=gcc runtime=cc8.4.1_libc2.28_kernel3.10.0 tbb_build_prefix=linux_intel64_gcc_cc8.4.1_libc2.28_kernel3.10.0 work_dir=/tmp/RtmpivzaIa/R.INSTALL37615d4a941d/RcppParallel/src/build/linux_intel64_gcc_cc8.4.1_libc2.28_kernel3.10.0_release make[1]: Leaving directory '/tmp/RtmpivzaIa/R.INSTALL37615d4a941d/RcppParallel/src/tbb/src' (tbb) TBB compilation finished successfully. g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O2 -c options.cpp -o options.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o RcppParallel.so init.o options.o -L/opt/R/4.0.3/lib/R/lib -lR installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RcppParallel' finding HTML links ... done RcppParallel-package html RcppParallel.package.skeleton html flags html setThreadOptions html tbbLibraryPath html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries readelf: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbb.so: Error: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbb.so: Failed to read file header readelf: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbbmalloc.so: Error: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbbmalloc.so: Failed to read file header readelf: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbbmalloc_proxy.so: Error: /opt/R/4.0.3/lib/R/library/00LOCK-RcppParallel/00new/RcppParallel/lib/libtbbmalloc_proxy.so: Failed to read file header ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppParallel) Making 'packages.html' ... done * installing *source* package 'freetypeharfbuzz' ... ** package 'freetypeharfbuzz' successfully unpacked and MD5 sums checked ** using staged installation 0.2.5 Selecting -std=c99 flag ** libs cd /tmp/Rtmp7OxFoX/R.INSTALL39a47c841163/freetypeharfbuzz/src/../tools && make make[1]: Entering directory '/tmp/Rtmp7OxFoX/R.INSTALL39a47c841163/freetypeharfbuzz/tools' ./download.sh "https://github.com/lionel-/freetypeharfbuzz/raw/v`cat version`/tools/freetype-2.9-patched.tar.gz" freetype-2.9-patched.tar.gz trying URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz' Error in download.file("https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz", : cannot open URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz' In addition: Warning message: In download.file("https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz", : URL 'https://github.com/lionel-/freetypeharfbuzz/raw/v0.2.5/tools/freetype-2.9-patched.tar.gz': status was 'SSL connect error' Execution halted make[1]: *** [Makefile:19: freetype-2.9-patched.tar.gz] Error 1 make[1]: Leaving directory '/tmp/Rtmp7OxFoX/R.INSTALL39a47c841163/freetypeharfbuzz/tools' make: *** [Makebuild:16: /tmp/Rtmp7OxFoX/R.INSTALL39a47c841163/freetypeharfbuzz/src/../tools/freetype-2.9-patched.tar.gz] Error 2 ERROR: compilation failed for package 'freetypeharfbuzz' * removing '/opt/R/4.0.3/lib/R/library/freetypeharfbuzz' * installing *source* package 'lda' ... ** package 'lda' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cvb0.c -o cvb0.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gibbs.c -o gibbs.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o lda.so cvb0.o gibbs.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-lda/00new/lda/libs ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lda' finding HTML links ... done cora html filter.words html lda-package html lda.collapsed.gibbs.sampler html lexicalize html links.as.edgelist html newsgroups html nubbi.collapsed.gibbs.sampler html poliblog html predictive.distribution html predictive.link.probability html read.documents html rtm.collapsed.gibbs.sampler html sampson html slda.predict html top.topic.words html word.counts html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lda) Making 'packages.html' ... done * installing *source* package 'ISOcodes' ... ** package 'ISOcodes' successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices converting help for package 'ISOcodes' finding HTML links ... done ISO_15924 html ISO_3166 html ISO_4217 html ISO_639 html ISO_8859 html UN_M.49 html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISOcodes) Making 'packages.html' ... done * installing *source* package 'wordcloud' ... ** package 'wordcloud' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c layout.cpp -o layout.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o wordcloud.so RcppExports.o layout.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-wordcloud/00new/wordcloud/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'wordcloud' finding HTML links ... done SOTU html commonality.cloud html comparison.cloud html textplot html wordcloud html wordlayout html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wordcloud) Making 'packages.html' ... done * installing *source* package 'NLP' ... ** package 'NLP' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NLP' finding HTML links ... done AnnotatedPlainTextDocument html Annotation html Annotator html CoNLLTextDocument html CoNLLUTextDocument html Span html String html TaggedTextDocument html Tagged_Token html TextDocument html Tokenizer html Tree html WordListDocument html annotate html annotations_in_spans html annotators html datetime html features html generics html language html ngrams html tagsets html tokenizers html utils html viewers html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NLP) Making 'packages.html' ... done * installing *source* package 'mallet' ... ** package 'mallet' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mallet' finding HTML links ... done MalletLDA html mallet-package html mallet.doc.topics html mallet.import html mallet.read.dir html mallet.subset.topic.words html mallet.top.words html mallet.topic.hclust html mallet.topic.labels html mallet.topic.words html mallet.word.freqs html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mallet) Making 'packages.html' ... done * installing *source* package 'textdata' ... ** package 'textdata' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'textdata' finding HTML links ... done catalogue html dataset_ag_news html dataset_dbpedia html dataset_imdb html dataset_sentence_polarity html dataset_trec html embedding_glove html lexicon_afinn html lexicon_bing html lexicon_loughran html lexicon_nrc html lexicon_nrc_eil html lexicon_nrc_vad html load_dataset html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textdata) Making 'packages.html' ... done * installing *source* package 'tokenizers' ... ** package 'tokenizers' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c shingle_ngrams.cpp -o shingle_ngrams.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c skip_ngrams.cpp -o skip_ngrams.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tokenizers.so RcppExports.o shingle_ngrams.o skip_ngrams.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tokenizers/00new/tokenizers/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tokenizers' finding HTML links ... done basic-tokenizers html chunk_text html mobydick html ngram-tokenizers html ptb-tokenizer html shingle-tokenizers html stem-tokenizers html tokenizers html word-counting html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tokenizers) Making 'packages.html' ... done * installing *source* package 'tm' ... ** package 'tm' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c copy.c -o copy.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c remove.c -o remove.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c scan.c -o scan.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tdm.cpp -o tdm.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/BH/include' -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tokenizer.cpp -o tokenizer.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o tm.so RcppExports.o copy.o init.o remove.o scan.o tdm.o tokenizer.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-tm/00new/tm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tm' finding HTML links ... done Corpus html DataframeSource html DirSource html Docs html PCorpus html PlainTextDocument html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/PlainTextDocument.Rd:28: file link 'parse_ISO_8601_datetime' in package 'NLP' does not exist and so has been treated as a topic Reader html SimpleCorpus html Source html TextDocument html finding level-2 HTML links ... done URISource html VCorpus html VectorSource html WeightFunction html XMLSource html XMLTextDocument html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/XMLTextDocument.Rd:27: file link 'parse_ISO_8601_datetime' in package 'NLP' does not exist and so has been treated as a topic ZipSource html Zipf_n_Heaps html acq html combine html content_transformer html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/content_transformer.Rd:18: file link 'content' in package 'NLP' does not exist and so has been treated as a topic crude html findAssocs html findFreqTerms html findMostFreqTerms html foreign html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/foreign.Rd:45: file link 'read_stm_MC' in package 'slam' does not exist and so has been treated as a topic getTokenizers html getTransformations html hpc html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:41: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:47: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:49: file link 'setDefaultCluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:54: file link 'getDefaultCluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:62: file link 'makeForkCluster' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:74: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/hpc.Rd:75: file link 'parLapplyLB' in package 'parallel' does not exist and so has been treated as a topic inspect html matrix html meta html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/meta.Rd:62: file link 'meta' in package 'NLP' does not exist and so has been treated as a topic plot html readDOC html readDataframe html readPDF html readPlain html readRCV1 html readReut21578XML html readTagged html readXML html removeNumbers html removePunctuation html removeSparseTerms html removeWords html stemCompletion html stemDocument html stopwords html stripWhitespace html termFreq html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/termFreq.Rd:19: file link 'Span_Tokenizer' in package 'NLP' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/termFreq.Rd:20: file link 'Token_Tokenizer' in package 'NLP' does not exist and so has been treated as a topic tm_filter html tm_map html tm_reduce html tm_term_score html tokenizer html Rd warning: /tmp/RtmpWhUJnD/R.INSTALL3ef210191dd2/tm/man/tokenizer.Rd:38: file link 'Regexp_Tokenizer' in package 'NLP' does not exist and so has been treated as a topic weightBin html weightSMART html weightTf html weightTfIdf html writeCorpus html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm) Making 'packages.html' ... done ERROR: dependency 'freetypeharfbuzz' is not available for package 'vdiffr' * removing '/opt/R/4.0.3/lib/R/library/vdiffr' * installing *source* package 'stopwords' ... ** package 'stopwords' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stopwords' finding HTML links ... done data_stopwords_ancient html data_stopwords_marimo html data_stopwords_misc html data_stopwords_nltk html data_stopwords_perseus html data_stopwords_smart html data_stopwords_snowball html data_stopwords_stopwordsiso html lookup_iso_639_1 html stopwords-package html stopwords html stopwords_getlanguages html stopwords_getsources html stopwords_options html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stopwords) Making 'packages.html' ... done * installing *source* package 'quanteda' ... ** package 'quanteda' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fcm_mt.cpp -o fcm_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c index_mt.cpp -o index_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_chunk_mt.cpp -o tokens_chunk_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_compound_mt.cpp -o tokens_compound_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_lookup_mt.cpp -o tokens_lookup_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_ngrams_mt.cpp -o tokens_ngrams_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_recompile_mt.cpp -o tokens_recompile_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_replace_mt.cpp -o tokens_replace_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_segment_mt.cpp -o tokens_segment_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c tokens_select_mt.cpp -o tokens_select_mt.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c utility.cpp -o utility.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o quanteda.so RcppExports.o fcm_mt.o index_mt.o tokens_chunk_mt.o tokens_compound_mt.o tokens_lookup_mt.o tokens_ngrams_mt.o tokens_recompile_mt.o tokens_replace_mt.o tokens_segment_mt.o tokens_select_mt.o utility.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-quanteda/00new/quanteda/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'quanteda' finding HTML links ... done as.character.corpus html as.data.frame.dfm html as.dfm html as.dictionary html as.fcm html as.matrix.dfm html as.tokens html as.yaml html attributes-set html bootstrap_dfm html cbind.dfm html char_select html char_tolower html check_class html check_dots html check_integer html convert-wrappers html convert html corpus-class html corpus html corpus_group html corpus_reshape html corpus_sample html corpus_segment html corpus_subset html corpus_trim html data-internal html data-relocated html data_char_sampletext html data_char_ukimmig2010 html data_corpus_inaugural html data_dfm_lbgexample html data_dictionary_LSD2015 html dfm-class html dfm-internal html dfm html dfm2lsa html dfm_compress html dfm_group html dfm_lookup html dfm_match html dfm_replace html dfm_sample html dfm_select html dfm_sort html dfm_subset html dfm_tfidf html dfm_tolower html dfm_trim html dfm_weight html dictionary-class html dictionary html docfreq html docnames html docvars html escape_regex html expand html fcm-class html fcm html fcm_sort html featfreq html featnames html field_system html flatten_dictionary html format_sparsity html get_docvars html get_object_version html groups html head.dfm html index html is.collocations html is_glob html is_indexed html is_regex html kwic html list2dictionary html lowercase_dictionary_values html make_docvars html make_meta html matrix2dfm html matrix2fcm html merge_dictionary_values html message_error html meta html meta_system html msg html names-quanteda html ndoc html nest_dictionary html nsentence html ntoken html object-builders html object2id html pattern html pattern2id html phrase html pipe html print-methods html print.phrases html quanteda-package html quanteda_options html read_dict_functions html readtext-methods html reexports html remove_empty_keys html replace_dictionary_values html resample html reshape_docvars html search_glob html search_index html serialize_tokens html set_dfm_dimnames html spacyr-methods html sparsity html split_values html summary.corpus html summary_metadata html textmodels html textplots html texts html textstats html tokenize_internal html tokens-class html tokens html tokens_chunk html tokens_compound html tokens_group html tokens_lookup html tokens_ngrams html tokens_recompile html tokens_replace html tokens_sample html tokens_segment html tokens_select html tokens_split html tokens_subset html tokens_tolower html tokens_wordstem html topfeatures html types html unlist_character html unlist_integer html valuetype html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quanteda) Making 'packages.html' ... done * installing *source* package 'topicmodels' ... ** package 'topicmodels' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cokus.c -o cokus.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ctm.c -o ctm.o ctm.c:29:10: fatal error: gsl/gsl_rng.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. make: *** [/opt/R/4.0.3/lib/R/etc/Makeconf:172: ctm.o] Error 1 ERROR: compilation failed for package 'topicmodels' * removing '/opt/R/4.0.3/lib/R/library/topicmodels' * installing *source* package 'tidytext' ... ** package 'tidytext' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tidytext' finding HTML links ... done bind_tf_idf html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/bind_tf_idf.Rd:27: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic cast_sparse html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/cast_sparse.Rd:32: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic corpus_tidiers html deprecated-se html dictionary_tidiers html document_term_casters html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/document_term_casters.Rd:39: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic get_sentiments html get_stopwords html lda_tidiers html mallet_tidiers html nma_words html parts_of_speech html reexports html reorder_within html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/reorder_within.Rd:36: file link 'scale_x_discrete' in package 'ggplot2' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/reorder_within.Rd:36: file link 'scale_y_discrete' in package 'ggplot2' does not exist and so has been treated as a topic sentiments html stm_tidiers html stop_words html tdm_tidiers html tidy.Corpus html tidy_triplet html tidytext html unnest_character html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_character.Rd:42: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic unnest_ngrams html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_ngrams.Rd:44: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic unnest_ptb html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_ptb.Rd:26: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic unnest_regex html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_regex.Rd:27: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic unnest_sentences html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_sentences.Rd:52: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic unnest_tokens html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_tokens.Rd:27: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_tokens.Rd:71: file link 'hunspell_parse' in package 'hunspell' does not exist and so has been treated as a topic unnest_tweets html Rd warning: /tmp/Rtmp76r5v6/R.INSTALL411666e5bf5c/tidytext/man/unnest_tweets.Rd:28: file link 'quasiquotation' in package 'rlang' does not exist and so has been treated as a topic *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidytext) Making 'packages.html' ... done * installing *source* package 'stm' ... ** package 'stm' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c STMCfuns.cpp -o STMCfuns.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o stm.so RcppExports.o STMCfuns.o init.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-stm/00new/stm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'stm' finding HTML links ... done alignCorpus html asSTMCorpus html calcfrex html calclift html calcscore html checkBeta html checkResiduals html cloud html convertCorpus html estimateEffect html exclusivity html findThoughts html findTopic html fitNewDocuments html gadarian html js.estimate html labelTopics html make.dt html make.heldout html makeDesignMatrix html manyTopics html multiSTM html optimizeDocument html permutationTest html plot.MultimodDiagnostic html plot.STM html plot.STMpermute html plot.estimateEffect html plot.searchK html plot.topicCorr html plotModels html plotQuote html plotRemoved html plotTopicLoess html poliblog5k html prepDocuments html readCorpus html Rd warning: /tmp/Rtmpku4C3J/R.INSTALL41883aba8720/stm/man/readCorpus.Rd:33: file link 'simple_triplet_matrix' in package 'slam' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmpku4C3J/R.INSTALL41883aba8720/stm/man/readCorpus.Rd:37: file link 'simple_triplet_matrix' in package 'slam' does not exist and so has been treated as a topic readLdac html rmvnorm html s html sageLabels html searchK html selectModel html semanticCoherence html stm-package html stm html Rd warning: /tmp/Rtmpku4C3J/R.INSTALL41883aba8720/stm/man/stm.Rd:41: file link 'lda' in package 'lda' does not exist and so has been treated as a topic summary.STM html summary.estimateEffect html textProcessor html thetaPosterior html toLDAvis html toLDAvisJson html topicCorr html topicLasso html finding level-2 HTML links ... done topicQuality html unpack.glmnet html writeLdac html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stm) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'ids', 'dtplyr', 'googledrive', 'googlesheets4', 'modelr', 'reprex' * installing *source* package 'ids' ... ** package 'ids' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ids' finding HTML links ... done adjective_animal html ids html proquint html proquint_conversion html random_id html sentence html uuid html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ids) Making 'packages.html' ... done * installing *source* package 'dtplyr' ... ** package 'dtplyr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dtplyr' finding HTML links ... done arrange.dtplyr_step html finding level-2 HTML links ... done collect.dtplyr_step html count.dtplyr_step html distinct.dtplyr_step html dtplyr-package html filter.dtplyr_step html group_by.dtplyr_step html group_modify.dtplyr_step html head.dtplyr_step html intersect.dtplyr_step html lazy_dt html left_join.dtplyr_step html mutate.dtplyr_step html pivot_wider.dtplyr_step html relocate.dtplyr_step html rename.dtplyr_step html select.dtplyr_step html slice.dtplyr_step html summarise.dtplyr_step html transmute.dtplyr_step html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dtplyr) Making 'packages.html' ... done * installing *source* package 'googledrive' ... ** package 'googledrive' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'googledrive' finding HTML links ... done as_dribble html as_id html as_team_drive html dribble-checks html dribble html drive_about html drive_auth html Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/drive_auth.Rd:26: file link 'gargle_oauth_email' in package 'gargle' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/drive_auth.Rd:43: file link 'gargle_oauth_cache' in package 'gargle' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/drive_auth.Rd:47: file link 'gargle_oob_default' in package 'gargle' does not exist and so has been treated as a topic drive_auth_configure html Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/drive_auth_configure.Rd:27: file link 'AuthState' in package 'gargle' does not exist and so has been treated as a topic drive_browse html drive_cp html drive_create html drive_deauth html drive_download html drive_empty_trash html drive_endpoints html drive_example html drive_extension html drive_fields html drive_find html drive_get html drive_has_token html drive_link html drive_ls html drive_mime_type html drive_mkdir html drive_mv html drive_publish html drive_put html drive_rename html drive_reveal html drive_rm html drive_share html drive_token html Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/drive_token.Rd:10: file link 'httr' in package 'httr' does not exist and so has been treated as a topic drive_trash html drive_update html drive_upload html drive_user html expose html googledrive-deprecated html googledrive-package html pipe html Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic request_generate html Rd warning: /tmp/RtmpeFy4Iu/R.INSTALL42f75356d514/googledrive/man/request_generate.Rd:66: file link 'request_build' in package 'gargle' does not exist and so has been treated as a topic request_make html finding level-2 HTML links ... done team_drive_create html team_drive_find html team_drive_get html team_drive_rm html team_drive_update html team_drives html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googledrive) Making 'packages.html' ... done * installing *source* package 'modelr' ... ** package 'modelr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'modelr' finding HTML links ... done add_predictions html add_predictors html add_residuals html bootstrap html crossv_mc html data_grid html fit_with html formulas html geom_ref_line html heights html model-quality html model_matrix html modelr-package html na.warn html Rd warning: /tmp/RtmptZluF5/R.INSTALL436949e6699e/modelr/man/na.warn.Rd:15: file link 'na.exclude' in package 'stats' does not exist and so has been treated as a topic permute html Rd warning: /tmp/RtmptZluF5/R.INSTALL436949e6699e/modelr/man/permute.Rd:18: file link 'select_helpers' in package 'dplyr' does not exist and so has been treated as a topic pipe html resample html resample_bootstrap html resample_partition html resample_permutation html seq_range html sim html typical html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (modelr) Making 'packages.html' ... done * installing *source* package 'reprex' ... ** package 'reprex' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reprex' finding HTML links ... done reprex-package html reprex html reprex_addin html reprex_document html reprex_locale html reprex_options html reprex_render html reprex_venue html un-reprex html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reprex) Making 'packages.html' ... done * installing *source* package 'googlesheets4' ... ** package 'googlesheets4' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'googlesheets4' finding HTML links ... done as_id.googlesheets4_spreadsheet html as_sheets_id html finding level-2 HTML links ... done cell-specification html googlesheets4-deprecated html googlesheets4-package html googlesheets4-vctrs html gs4_auth html gs4_auth_configure html gs4_browse html gs4_create html gs4_deauth html gs4_endpoints html gs4_example html gs4_find html gs4_fodder html gs4_formula html gs4_get html gs4_has_token html gs4_random html gs4_token html gs4_user html pipe html Rd warning: /tmp/RtmpBYlTbk/R.INSTALL444d2a22c01/googlesheets4/man/pipe.Rd:10: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic range_autofit html range_delete html range_flood html range_read html range_read_cells html range_speedread html range_write html request_generate html request_make html sheet_add html sheet_append html sheet_copy html sheet_delete html sheet_properties html sheet_relocate html sheet_rename html sheet_resize html sheet_write html sheets_id html spread_sheet html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googlesheets4) Making 'packages.html' ... done * installing *source* package 'tidyverse' ... ** package 'tidyverse' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'tidyverse' finding HTML links ... done tidyverse-package html tidyverse_conflicts html tidyverse_deps html tidyverse_logo html tidyverse_packages html tidyverse_sitrep html tidyverse_update html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (tidyverse) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done -- Attaching packages --------------------------------------- tidyverse 1.3.1 -- v readr 1.4.0 v forcats 0.5.1 v stringr 1.4.0 -- Conflicts ------------------------------------------ tidyverse_conflicts() -- x readr::col_factor() masks scales::col_factor() x purrr::discard() masks scales::discard() x dplyr::filter() masks stats::filter() x stringr::fixed() masks recipes::fixed() x dplyr::lag() masks stats::lag() x readr::spec() masks yardstick::spec() also installing the dependencies 'inline', 'loo', 'V8', 'snakecase', 'reactR', 'extraDistr', 'rstan', 'rstantools', 'PerformanceAnalytics', 'Quandl', 'riingo', 'alphavantager', 'janitor', 'StanHeaders', 'reactable', 'progressr', 'prophet', 'padr', 'anytime', 'tidyquant', 'modeltime', 'robets', 'timeSeries' * installing *source* package 'inline' ... ** package 'inline' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'inline' finding HTML links ... done cfunction html cxxfunction html getDynLib html inline-package html internals html package.skeleton html plugins html utilities html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inline) Making 'packages.html' ... done * installing *source* package 'loo' ... ** package 'loo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'loo' finding HTML links ... done E_loo html ap_psis html compare html dot-compute_point_estimate html dot-ndraws html dot-thin_draws html elpd html example_loglik_array html extract_log_lik html find_model_names html gpdfit html importance_sampling html importance_sampling.array html importance_sampling.default html importance_sampling.matrix html kfold-generic html kfold-helpers html loo-datasets html loo-glossary html loo-package html loo html loo_approximate_posterior html loo_compare html loo_model_weights html loo_moment_match html loo_moment_match_split html loo_subsample html nlist html nobs.psis_loo_ss html obs_idx html old-extractors html parallel_psis_list html pareto-k-diagnostic html print.loo html print_dims html psis html psis_approximate_posterior html psislw html relative_eff html sis html tis html update.psis_loo_ss html waic html weights.importance_sampling html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loo) Making 'packages.html' ... done * installing *source* package 'V8' ... ** package 'V8' successfully unpacked and MD5 sums checked ** using staged installation Found C++14 compiler: g++ Using CXXCPP=g++ -std=gnu++14 -E Using PKG_CFLAGS=-I/usr/include/v8 -I/usr/include/v8-3.14 Using PKG_LIBS=-lv8 -lv8_libplatform -----------------------------[ ANTICONF ]------------------------------- Configuration failed to find the libv8 engine library. Try installing: * deb: libv8-dev or libnode-dev (Debian / Ubuntu) * rpm: v8-devel (Fedora, EPEL) * brew: v8 (OSX) * csw: libv8_dev (Solaris) Alternatively, on Linux (x86_64) or MacOS you can set environment variable: DOWNLOAD_STATIC_LIBV8=1 to automatically download a static version of libv8. To use a custom libv8, set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' ---------------------------[ ERROR MESSAGE ]---------------------------- :1:10: fatal error: v8.h: No such file or directory compilation terminated. ------------------------------------------------------------------------ ERROR: configuration failed for package 'V8' * removing '/opt/R/4.0.3/lib/R/library/V8' * installing *source* package 'snakecase' ... ** package 'snakecase' successfully unpacked and MD5 sums checked ** using staged installation ** R Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding Warning in parse(outFile) : unable to translate '' to native encoding ** inst ** byte-compile and prepare package for lazy loading Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : unable to translate '' to native encoding ** help *** installing help indices converting help for package 'snakecase' finding HTML links ... done abbreviation_internal html caseconverter html check_design_rule html parsing_helpers html preprocess_internal html relevant html replace_special_characters_internal html to_any_case html to_parsed_case_internal html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (snakecase) Making 'packages.html' ... done * installing *source* package 'reactR' ... ** package 'reactR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reactR' finding HTML links ... done React html babel_transform html component html createReactShinyInput html html_dependency_corejs html html_dependency_mobx html html_dependency_react html html_dependency_reacttools html reactMarkup html scaffoldReactShinyInput html scaffoldReactWidget html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactR) Making 'packages.html' ... done * installing *source* package 'extraDistr' ... ** package 'extraDistr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bernoulli-distribution.cpp -o bernoulli-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c beta-binomial-distribution.cpp -o beta-binomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c beta-negative-binomial-distribution.cpp -o beta-negative-binomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c beta-prime-distribution.cpp -o beta-prime-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bhattacharjee-distribution.cpp -o bhattacharjee-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c birnbaum-saunders-distribution.cpp -o birnbaum-saunders-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bivariate-normal-distribution.cpp -o bivariate-normal-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bivariate-poisson-distribution.cpp -o bivariate-poisson-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c categorical-distribution-lp.cpp -o categorical-distribution-lp.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c categorical-distribution.cpp -o categorical-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c dirichlet-distribution.cpp -o dirichlet-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c dirichlet-multinomial-distribution.cpp -o dirichlet-multinomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c discrete-gamma-distribution.cpp -o discrete-gamma-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c discrete-laplace-distribution.cpp -o discrete-laplace-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c discrete-normal-distribution.cpp -o discrete-normal-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c discrete-uniform-distribution.cpp -o discrete-uniform-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c discrete-weibull-distribution.cpp -o discrete-weibull-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c frechet-distribution.cpp -o frechet-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gamma-poisson-distribution.cpp -o gamma-poisson-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gev-distribution.cpp -o gev-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gompertz-distribution.cpp -o gompertz-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gpd-distribution.cpp -o gpd-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gumbel-distribution.cpp -o gumbel-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c half-cauchy-distribution.cpp -o half-cauchy-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c half-normal-distribution.cpp -o half-normal-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c half-t-distribution.cpp -o half-t-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c huber-distribution.cpp -o huber-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c inverse-gamma-distribution.cpp -o inverse-gamma-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kumaraswamy-distribution.cpp -o kumaraswamy-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c laplace-distribution.cpp -o laplace-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c location-scale-t-distribution.cpp -o location-scale-t-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c logarithmic-series-distribution.cpp -o logarithmic-series-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c lomax-distribution.cpp -o lomax-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c mixture-of-normal-distributions.cpp -o mixture-of-normal-distributions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c mixture-of-poisson-distributions.cpp -o mixture-of-poisson-distributions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c multinomial-distribution.cpp -o multinomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c multivariate-hypergeometric-distribution.cpp -o multivariate-hypergeometric-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c negative-hypergeometric-distribution.cpp -o negative-hypergeometric-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c non-standart-beta-distribution.cpp -o non-standart-beta-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pareto-distribution.cpp -o pareto-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c power-distribution.cpp -o power-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c proportion-distribution.cpp -o proportion-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rademacher-distribution.cpp -o rademacher-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c rayleigh-distribution.cpp -o rayleigh-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c shared.cpp -o shared.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c shifted-gompertz-distribution.cpp -o shifted-gompertz-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c skellam-distribution.cpp -o skellam-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c slash-distribution.cpp -o slash-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c triangular-distribution.cpp -o triangular-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c truncated-binomial-distribution.cpp -o truncated-binomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c truncated-normal-distribution.cpp -o truncated-normal-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c truncated-poisson-distribution.cpp -o truncated-poisson-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c tuckey-lambda-distribution.cpp -o tuckey-lambda-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wald-distribution.cpp -o wald-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zero-inflated-binomial-distribution.cpp -o zero-inflated-binomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zero-inflated-negative-binomial-distribution.cpp -o zero-inflated-negative-binomial-distribution.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zero-inflated-poisson-distribution.cpp -o zero-inflated-poisson-distribution.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o extraDistr.so RcppExports.o bernoulli-distribution.o beta-binomial-distribution.o beta-negative-binomial-distribution.o beta-prime-distribution.o bhattacharjee-distribution.o birnbaum-saunders-distribution.o bivariate-normal-distribution.o bivariate-poisson-distribution.o categorical-distribution-lp.o categorical-distribution.o dirichlet-distribution.o dirichlet-multinomial-distribution.o discrete-gamma-distribution.o discrete-laplace-distribution.o discrete-normal-distribution.o discrete-uniform-distribution.o discrete-weibull-distribution.o frechet-distribution.o gamma-poisson-distribution.o gev-distribution.o gompertz-distribution.o gpd-distribution.o gumbel-distribution.o half-cauchy-distribution.o half-normal-distribution.o half-t-distribution.o huber-distribution.o inverse-gamma-distribution.o kumaraswamy-distribution.o laplace-distribution.o location-scale-t-distribution.o logarithmic-series-distribution.o lomax-distribution.o mixture-of-normal-distributions.o mixture-of-poisson-distributions.o multinomial-distribution.o multivariate-hypergeometric-distribution.o negative-hypergeometric-distribution.o non-standart-beta-distribution.o pareto-distribution.o power-distribution.o proportion-distribution.o rademacher-distribution.o rayleigh-distribution.o shared.o shifted-gompertz-distribution.o skellam-distribution.o slash-distribution.o triangular-distribution.o truncated-binomial-distribution.o truncated-normal-distribution.o truncated-poisson-distribution.o tuckey-lambda-distribution.o wald-distribution.o zero-inflated-binomial-distribution.o zero-inflated-negative-binomial-distribution.o zero-inflated-poisson-distribution.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-extraDistr/00new/extraDistr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'extraDistr' finding HTML links ... done Bernoulli html BetaBinom html BetaNegBinom html BetaPrime html Bhattacharjee html BirnbaumSaunders html BivNormal html BivPoiss html Categorical html DirMnom html Dirichlet html DiscreteGamma html DiscreteLaplace html DiscreteNormal html DiscreteUniform html DiscreteWeibull html Frechet html GEV html GPD html GammaPoiss html Rd warning: /tmp/Rtmp24HSR4/R.INSTALL478b3fa8e24c/extraDistr/man/GammaPoiss.Rd:84: file link 'Gamma' in package 'stats' does not exist and so has been treated as a topic Gompertz html Gumbel html HalfCauchy html HalfNormal html HalfT html Huber html InvChiSq html InvGamma html Kumaraswamy html Laplace html LocationScaleT html LogSeries html Lomax html MultiHypergeometric html Multinomial html Rd warning: /tmp/Rtmp24HSR4/R.INSTALL478b3fa8e24c/extraDistr/man/Multinomial.Rd:54: file link 'Multinomial' in package 'stats' does not exist and so has been treated as a topic NSBeta html NegHyper html NormalMix html Pareto html PoissonMix html PowerDist html PropBeta html Rademacher html Rayleigh html ShiftGomp html Skellam html Slash html Triangular html TruncBinom html TruncNormal html TruncPoisson html TukeyLambda html Wald html ZIB html ZINB html ZIP html extraDistr html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extraDistr) Making 'packages.html' ... done * installing *source* package 'rstantools' ... ** package 'rstantools' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rstantools' finding HTML links ... done bayes_R2 html init_cpp html log_lik html loo-prediction html nsamples html posterior_epred html posterior_interval html posterior_linpred html posterior_predict html predictive_error html predictive_interval html prior_summary html rstan_config html rstan_create_package html finding level-2 HTML links ... done rstantools-package html use_rstan html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstantools) Making 'packages.html' ... done * installing *source* package 'PerformanceAnalytics' ... ** package 'PerformanceAnalytics' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c MCAHelper.c -o MCAHelper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c comomentsEstimators.c -o comomentsEstimators.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c comomentsHelper.c -o comomentsHelper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o PerformanceAnalytics.so MCAHelper.o comomentsEstimators.o comomentsHelper.o init.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-PerformanceAnalytics/00new/PerformanceAnalytics/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PerformanceAnalytics' finding HTML links ... done ActivePremium html AdjustedSharpeRatio html AppraisalRatio html AverageDrawdown html AverageLength html AverageRecovery html BernardoLedoitRatio html BetaCoMoments html BurkeRatio html CAPM.RiskPremium html CAPM.alpha html CAPM.beta html CAPM.dynamic html CAPM.epsilon html CAPM.jensenAlpha html CDD html CalmarRatio html CoMoments html DRatio html DownsideDeviation html DownsideFrequency html DrawdownDeviation html DrawdownPeak html ES html EWMAMoments html FamaBeta html Frequency html HurstIndex html InformationRatio html Kappa html KellyRatio html Level.calculate html M2Sortino html MCA html MSquared html MSquaredExcess html MarketTiming html MartinRatio html MeanAbsoluteDeviation html MinTrackRecord html Modigliani html NetSelectivity html Omega html OmegaExcessReturn html OmegaSharpeRatio html PainIndex html PainRatio html PerformanceAnalytics-package html Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/PerformanceAnalytics-package.Rd:180: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic ProbSharpeRatio html ProspectRatio html RPESE.control html RachevRatio html Return.Geltner html Return.annualized html Return.annualized.excess html Return.calculate html Return.clean html Return.convert html Return.cumulative html Return.excess html Return.locScaleRob html Return.portfolio html Return.read html Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/Return.read.Rd:22: file link 'as.yearmon' in package 'zoo' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/Return.read.Rd:23: file link 'as.yearqtr' in package 'zoo' does not exist and so has been treated as a topic Return.relative html Selectivity html SharpeRatio html SharpeRatio.annualized html ShrinkageMoments html SkewnessKurtosisRatio html SmoothingIndex html SortinoRatio html SpecificRisk html StdDev html StdDev.annualized html StructuredMoments html SystematicRisk html TotalRisk html TrackingError html TreynorRatio html UlcerIndex html UpDownRatios html UpsideFrequency html UpsidePotentialRatio html UpsideRisk html VaR html VolatilitySkewness html apply.fromstart html apply.rolling html centeredmoments html chart.ACF html chart.Bar html chart.BarVaR html chart.Boxplot html chart.CaptureRatios html chart.Correlation html chart.CumReturns html chart.Drawdown html chart.ECDF html chart.Events html chart.Histogram html chart.QQPlot html Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/chart.QQPlot.Rd:183: file link 'qqplot' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/chart.QQPlot.Rd:184: file link 'qq.plot' in package 'car' does not exist and so has been treated as a topic chart.Regression html chart.RelativePerformance html chart.RiskReturnScatter html chart.RollingCorrelation html finding level-2 HTML links ... done chart.RollingMean html chart.RollingPerformance html chart.RollingRegression html chart.Scatter html chart.SnailTrail html chart.StackedBar html Rd warning: /tmp/Rtmp36gnfD/R.INSTALL492c5eaa43cb/PerformanceAnalytics/man/chart.StackedBar.Rd:109: file link 'barchart' in package 'lattice' does not exist and so has been treated as a topic chart.TimeSeries html chart.VaRSensitivity html charts.PerformanceSummary html charts.RollingPerformance html checkData html checkSeedValue html clean.boudt html edhec html findDrawdowns html kurtosis html legend html lpm html managers html maxDrawdown html mean.geometric html portfolio_bacon html prices html skewness html sortDrawdowns html table.AnnualizedReturns html table.Arbitrary html table.Autocorrelation html table.CAPM html table.CalendarReturns html table.CaptureRatios html table.Correlation html table.Distributions html table.DownsideRisk html table.DownsideRiskRatio html table.Drawdowns html table.DrawdownsRatio html table.HigherMoments html table.InformationRatio html table.MonthlyReturns html table.ProbOutPerformance html table.RollingPeriods html table.SpecificRisk html table.Variability html test_returns html test_weights html textplot html to.period.contributions html weights html zerofill html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PerformanceAnalytics) Making 'packages.html' ... done * installing *source* package 'Quandl' ... ** package 'Quandl' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Quandl' finding HTML links ... done Quandl html Quandl.api_key html Quandl.auth html Quandl.database.bulk_download_to_file html Quandl.database.bulk_download_url html Quandl.dataset.get html Quandl.datatable html Quandl.datatable.bulk_download_to_file html Quandl.datatable.bulk_download_url html Quandl.search html metaData html quandl.api html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Quandl) Making 'packages.html' ... done * installing *source* package 'riingo' ... ** package 'riingo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'riingo' finding HTML links ... done convert_to_local_time html riingo-package html riingo_browse html riingo_crypto_latest html riingo_crypto_meta html riingo_crypto_prices html riingo_crypto_quote html riingo_fundamentals_definitions html riingo_fundamentals_meta html riingo_fundamentals_metrics html riingo_fundamentals_statements html riingo_fx_prices html riingo_fx_quote html riingo_iex_latest html riingo_iex_prices html riingo_iex_quote html riingo_latest html riingo_meta html riingo_news html riingo_prices html riingo_token html ticker_info html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (riingo) Making 'packages.html' ... done * installing *source* package 'StanHeaders' ... ** package 'StanHeaders' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_spils.c -o cvodes/cvodes_spils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_io.c -o cvodes/cvodes_io.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_bbdpre.c -o cvodes/cvodes_bbdpre.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_nls_stg1.c -o cvodes/cvodes_nls_stg1.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes.c -o cvodes/cvodes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_nls_sim.c -o cvodes/cvodes_nls_sim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_diag.c -o cvodes/cvodes_diag.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_ls.c -o cvodes/cvodes_ls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_direct.c -o cvodes/cvodes_direct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_nls.c -o cvodes/cvodes_nls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_nls_stg.c -o cvodes/cvodes_nls_stg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodea.c -o cvodes/cvodea.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodea_io.c -o cvodes/cvodea_io.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c cvodes/cvodes_bandpre.c -o cvodes/cvodes_bandpre.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_matrix.c -o sundials/sundials_matrix.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_band.c -o sundials/sundials_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_math.c -o sundials/sundials_math.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_linearsolver.c -o sundials/sundials_linearsolver.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_nvector.c -o sundials/sundials_nvector.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_direct.c -o sundials/sundials_direct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_dense.c -o sundials/sundials_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_version.c -o sundials/sundials_version.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_iterative.c -o sundials/sundials_iterative.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_nvector_senswrapper.c -o sundials/sundials_nvector_senswrapper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sundials/sundials_nonlinearsolver.c -o sundials/sundials_nonlinearsolver.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunmatrix/band/sunmatrix_band.c -o sunmatrix/band/sunmatrix_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunmatrix/dense/sunmatrix_dense.c -o sunmatrix/dense/sunmatrix_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunlinsol/band/sunlinsol_band.c -o sunlinsol/band/sunlinsol_band.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunlinsol/dense/sunlinsol_dense.c -o sunlinsol/dense/sunlinsol_dense.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunnonlinsol/newton/sunnonlinsol_newton.c -o sunnonlinsol/newton/sunnonlinsol_newton.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_io.c -o idas/idas_io.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_nls_sim.c -o idas/idas_nls_sim.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_ls.c -o idas/idas_ls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_ic.c -o idas/idas_ic.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idaa_io.c -o idas/idaa_io.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_direct.c -o idas/idas_direct.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_spils.c -o idas/idas_spils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_nls_stg.c -o idas/idas_nls_stg.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas.c -o idas/idas.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_bbdpre.c -o idas/idas_bbdpre.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idas_nls.c -o idas/idas_nls.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c idas/idaa.c -o idas/idaa.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I'/opt/R/4.0.3/lib/R/library/RcppEigen/include' -I'/opt/R/4.0.3/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c nvector/serial/nvector_serial.c -o nvector/serial/nvector_serial.o ar -rs ../lib/libStanHeaders.a cvodes/cvodes_spils.o cvodes/cvodes_io.o cvodes/cvodes_bbdpre.o cvodes/cvodes_nls_stg1.o cvodes/cvodes.o cvodes/cvodes_nls_sim.o cvodes/cvodes_diag.o cvodes/cvodes_ls.o cvodes/cvodes_direct.o cvodes/cvodes_nls.o cvodes/cvodes_nls_stg.o cvodes/cvodea.o cvodes/cvodea_io.o cvodes/cvodes_bandpre.o sundials/sundials_matrix.o sundials/sundials_band.o sundials/sundials_math.o sundials/sundials_linearsolver.o sundials/sundials_nvector.o sundials/sundials_direct.o sundials/sundials_dense.o sundials/sundials_version.o sundials/sundials_iterative.o sundials/sundials_nvector_senswrapper.o sundials/sundials_nonlinearsolver.o sunmatrix/band/sunmatrix_band.o sunmatrix/dense/sunmatrix_dense.o sunlinsol/band/sunlinsol_band.o sunlinsol/dense/sunlinsol_dense.o sunnonlinsol/newton/sunnonlinsol_newton.o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o idas/idas_io.o idas/idas_nls_sim.o idas/idas_ls.o idas/idas_ic.o idas/idaa_io.o idas/idas_direct.o idas/idas_spils.o idas/idas_nls_stg.o idas/idas.o idas/idas_bbdpre.o idas/idas_nls.o idas/idaa.o nvector/serial/nvector_serial.o ar: creating ../lib/libStanHeaders.a installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-StanHeaders/00new/StanHeaders ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'StanHeaders' finding HTML links ... done CxxFlags html stanFunction html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (StanHeaders) Making 'packages.html' ... done * installing *source* package 'progressr' ... ** package 'progressr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'progressr' finding HTML links ... done global_progression_handler html handler_ascii_alert html handler_beepr html handler_debug html handler_filesize html handler_newline html handler_notifier html handler_pbcol html handler_pbmcapply html handler_progress html handler_shiny html handler_tkprogressbar html handler_txtprogressbar html handler_void html handler_winprogressbar html handlers html make_progression_handler html progress html progress_aggregator html progress_progressr html progression html progressor html progressr html progressr.options html register_global_progression_handler html slow_sum html withProgressShiny html with_progress html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progressr) Making 'packages.html' ... done * installing *source* package 'padr' ... ** package 'padr' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c padr_init.c -o padr_init.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c round_down_core.cpp -o round_down_core.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c round_down_core_prev.cpp -o round_down_core_prev.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c round_up_core.cpp -o round_up_core.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c round_up_core_prev.cpp -o round_up_core_prev.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o padr.so RcppExports.o padr_init.o round_down_core.o round_down_core_prev.o round_up_core.o round_up_core_prev.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-padr/00new/padr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'padr' finding HTML links ... done center_interval html closest_weekday html coffee html emergency html fill_by_function html fill_by_prevalent html fill_by_value html format_interval html get_interval html pad html pad_cust html pad_int html span_around html span_date html span_time html subset_span html thicken html thicken_cust html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (padr) Making 'packages.html' ... done * installing *source* package 'anytime' ... ** package 'anytime' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/BH/include' -I/usr/local/include -DRCPP_NO_RTTI -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I'/opt/R/4.0.3/lib/R/library/BH/include' -I/usr/local/include -DRCPP_NO_RTTI -fpic -g -O2 -c anytime.cpp -o anytime.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o anytime.so RcppExports.o anytime.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-anytime/00new/anytime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'anytime' finding HTML links ... done anytime-package html anytime html assertDate html getFormats html iso8601 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (anytime) Making 'packages.html' ... done * installing *source* package 'robets' ... ** package 'robets' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c calc_out.cpp -o calc_out.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c etspolyroot.c -o etspolyroot.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c robetsTargetFunction.cpp -o robetsTargetFunction.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c robetsTargetFunctionWrapper.cpp -o robetsTargetFunctionWrapper.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o robets.so RcppExports.o calc_out.o etspolyroot.o registerDynamicSymbol.o robetsTargetFunction.o robetsTargetFunctionWrapper.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-robets/00new/robets/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'robets' finding HTML links ... done coef.robets html forecast.robets html plot.robets html finding level-2 HTML links ... done plotOutliers html print.robets html robets html summary.robets html tau2 html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robets) Making 'packages.html' ... done * installing *source* package 'timeSeries' ... ** package 'timeSeries' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'apply' from package 'base' in package 'timeSeries' Creating a generic function for 'attach' from package 'base' in package 'timeSeries' Creating a generic function for 'colnames' from package 'base' in package 'timeSeries' Creating a generic function for 'rownames' from package 'base' in package 'timeSeries' Creating a generic function for 'colnames<-' from package 'base' in package 'timeSeries' Creating a generic function for 'rownames<-' from package 'base' in package 'timeSeries' Creating a generic function for 'rank' from package 'base' in package 'timeSeries' Creating a generic function for 'comment' from package 'base' in package 'timeSeries' Creating a generic function for 'comment<-' from package 'base' in package 'timeSeries' Creating a generic function for 'is.unsorted' from package 'base' in package 'timeSeries' Creating a generic function for 'colSums' from package 'base' in package 'timeSeries' Creating a generic function for 'colMeans' from package 'base' in package 'timeSeries' Creating a generic function for 'filter' from package 'stats' in package 'timeSeries' Creating a generic function for 'setDataPart' from package 'methods' in package 'timeSeries' ** help *** installing help indices converting help for package 'timeSeries' finding HTML links ... done 00timeSeries-package html base-apply html base-attach html base-cbind html base-diff html base-dim html base-merge html base-rank html base-rev html base-sample html base-scale html base-sort html base-start html base-subsetting html base-t html data-examples html fin-align html fin-cumulated html fin-daily html fin-drawdowns html fin-durations html fin-monthly html fin-periodical html fin-returns html fin-runlengths html fin-splits html fin-spreads html fin-turnpoints html fin-wealth html methods-as html methods-base html methods-comment html methods-is html methods-mathOps html methods-plot html methods-show html methods-stats html statistics-colCumsums html statistics-colSums html statistics-orderColnames html statistics-orderStatistics html statistics-rollMean html statistics-rowCumsums html statistics-smoothLowess html stats-aggregate html stats-filter html stats-lag html stats-model.frame html stats-na.contiguous html stats-na.omit html stats-window html timeSeries-deprecated html timeSeries-getDataPart html timeSeries-isRegular html timeSeries-isUnivariate html timeSeries-readSeries html timeSeries-slotDocumentation html timeSeries-slotFinCenter html timeSeries-slotSeries html timeSeries-slotTime html timeSeries-slotUnits html timeSeries html utils-description html utils-structure html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timeSeries) Making 'packages.html' ... done ERROR: dependency 'V8' is not available for package 'rstan' * removing '/opt/R/4.0.3/lib/R/library/rstan' * installing *source* package 'janitor' ... ** package 'janitor' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'janitor' finding HTML links ... done add_totals_col html add_totals_row html adorn_crosstab html adorn_ns html adorn_pct_formatting html adorn_percentages html adorn_rounding html adorn_title html adorn_totals html as_tabyl html chisq.test html clean_names html compare_df_cols html compare_df_cols_same html convert_to_NA html convert_to_date html crosstab html describe_class html excel_numeric_to_date html fisher.test html get_dupes html janitor html janitor_deprecated html make_clean_names html pipe html remove_constant html remove_empty html remove_empty_cols html remove_empty_rows html round_half_up html round_to_fraction html row_to_names html signif_half_up html tabyl html top_levels html untabyl html use_first_valid_of html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (janitor) Making 'packages.html' ... done * installing *source* package 'reactable' ... ** package 'reactable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'reactable' finding HTML links ... done colDef html colFormat html colGroup html getReactableState html reactable-package html reactable-shiny html reactable html reactableLang html reactableTheme html reactable_html html reexports html updateReactable html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactable) Making 'packages.html' ... done * installing *source* package 'timetk' ... ** package 'timetk' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'timetk' finding HTML links ... done between_time html bike_sharing_daily html box_cox_vec html condense_period html diff_vec html filter_by_time html filter_period html fourier_vec html future_frame html is_date_class html lag_vec html log_interval_vec html m4_daily html m4_hourly html m4_monthly html m4_quarterly html m4_weekly html m4_yearly html mutate_by_time html normalize_vec html pad_by_time html parse_date2 html finding level-2 HTML links ... done plot_acf_diagnostics html plot_anomaly_diagnostics html plot_seasonal_diagnostics html plot_stl_diagnostics html plot_time_series html plot_time_series_cv_plan html plot_time_series_regression html required_pkgs.timetk html slice_period html slidify html slidify_vec html smooth_vec html standardize_vec html step_box_cox html step_diff html step_fourier html step_holiday_signature html step_log_interval html step_slidify html step_slidify_augment html step_smooth html step_timeseries_signature html step_ts_clean html step_ts_impute html step_ts_pad html summarise_by_time html taylor_30_min html tidyeval html time_arithmetic html time_series_cv html time_series_split html timetk html timetk_internal html tk_acf_diagnostics html tk_anomaly_diagnostics html tk_augment_differences html tk_augment_fourier html tk_augment_holiday html tk_augment_lags html tk_augment_slidify html tk_augment_timeseries html tk_get_frequency html tk_get_holiday html tk_get_timeseries html tk_get_timeseries_unit_frequency html tk_get_timeseries_variables html tk_index html tk_make_future_timeseries html tk_make_holiday_sequence html tk_make_timeseries html tk_seasonal_diagnostics html tk_stl_diagnostics html tk_summary_diagnostics html tk_tbl html tk_time_scale_template html tk_time_series_cv_plan html tk_ts html tk_xts html tk_zoo html tk_zooreg html ts_clean_vec html ts_impute_vec html walmart_sales_weekly html wikipedia_traffic_daily html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (timetk) Making 'packages.html' ... done * installing *source* package 'alphavantager' ... ** package 'alphavantager' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'alphavantager' finding HTML links ... done alphavantager html av_api_key html av_get html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alphavantager) Making 'packages.html' ... done ERROR: dependency 'rstan' is not available for package 'prophet' * removing '/opt/R/4.0.3/lib/R/library/prophet' * installing *source* package 'tidyquant' ... ** package 'tidyquant' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning message: In system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** help *** installing help indices converting help for package 'tidyquant' finding HTML links ... done FANG html av_api_key html coord_x_date html deprecated html excel_date_functions html excel_financial_math_functions html excel_if_functions html excel_pivot_table html excel_ref_functions html excel_stat_mutation_functions html excel_stat_summary_functions html geom_bbands html geom_chart html geom_ma html palette_tq html pipe html quandl_api_key html quandl_search html scale_manual html finding level-2 HTML links ... done theme_tq html tidyquant html tiingo_api_key html tq_get html tq_index html tq_mutate html tq_performance html tq_portfolio html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package can be loaded from final location System has not been booted with systemd as init system (PID 1). Can't operate. Failed to create bus connection: Host is down Warning in system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (tidyquant) Making 'packages.html' ... done ERROR: dependency 'prophet' is not available for package 'modeltime' * removing '/opt/R/4.0.3/lib/R/library/modeltime' Updating HTML index of packages in '.Library' Making 'packages.html' ... done also installing the dependencies 'downloader', 'influenceR', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'float', 'titanic' * installing *source* package 'downloader' ... ** package 'downloader' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'downloader' finding HTML links ... done download html downloader html sha_url html finding level-2 HTML links ... done source_url html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (downloader) Making 'packages.html' ... done * installing *source* package 'influenceR' ... ** package 'influenceR' successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c bridging.c -o bridging.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c keyplayer-utils.c -o keyplayer-utils.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c keyplayer.c -o keyplayer.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c prefix_sums.c -o prefix_sums.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c process_sparse.c -o process_sparse.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c snap_wrapper.c -o snap_wrapper.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c vertex_betweenness_centrality.c -o vertex_betweenness_centrality.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o influenceR.so bridging.o keyplayer-utils.o keyplayer.o prefix_sums.o process_sparse.o snap_wrapper.o vertex_betweenness_centrality.o -fopenmp -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-influenceR/00new/influenceR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'influenceR' finding HTML links ... done betweenness html bridging html constraint html csv.to.igraph html ens html influenceR html keyplayer html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (influenceR) Making 'packages.html' ... done * installing *source* package 'Ckmeans.1d.dp' ... ** package 'Ckmeans.1d.dp' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Ckmeans.1d.dp.cpp -o Ckmeans.1d.dp.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Ckmeans.1d.dp_main.cpp -o Ckmeans.1d.dp_main.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c EWL2_dynamic_prog.cpp -o EWL2_dynamic_prog.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c EWL2_fill_SMAWK.cpp -o EWL2_fill_SMAWK.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c EWL2_fill_log_linear.cpp -o EWL2_fill_log_linear.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c EWL2_fill_quadratic.cpp -o EWL2_fill_quadratic.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c MCW_fill_SMAWK.cpp -o MCW_fill_SMAWK.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c MCW_functions.cpp -o MCW_functions.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c MCW_main.cpp -o MCW_main.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c dynamic_prog.cpp -o dynamic_prog.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fill_SMAWK.cpp -o fill_SMAWK.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fill_log_linear.cpp -o fill_log_linear.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fill_quadratic.cpp -o fill_quadratic.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c select_levels.cpp -o select_levels.o g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c weighted_select_levels.cpp -o weighted_select_levels.o g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o Ckmeans.1d.dp.so Ckmeans.1d.dp.o Ckmeans.1d.dp_main.o EWL2_dynamic_prog.o EWL2_fill_SMAWK.o EWL2_fill_log_linear.o EWL2_fill_quadratic.o MCW_fill_SMAWK.o MCW_functions.o MCW_main.o RcppExports.o dynamic_prog.o fill_SMAWK.o fill_log_linear.o fill_quadratic.o select_levels.o weighted_select_levels.o -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-Ckmeans.1d.dp/00new/Ckmeans.1d.dp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Ckmeans.1d.dp' finding HTML links ... done Ckmeans.1d.dp-package html Ckmeans.1d.dp html Cksegs.1d.dp html MultiChannel.WUC html ahist html plot.Ckmeans.1d.dp html plot.Cksegs.1d.dp html plotBIC html Rd warning: /private/var/folders/z7/x5493gg11n1gx_hdr3b2f2y00000gn/T/RtmpusGV7T/Rbuild3b313bf5d2d3/Ckmeans.1d.dp/man/plotBIC.Rd:25: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic print.Ckmeans.1d.dp html print.Cksegs.1d.dp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ckmeans.1d.dp) Making 'packages.html' ... done * installing *source* package 'vcd' ... ** package 'vcd' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'vcd' finding HTML links ... done Arthritis html Baseball html BrokenMarriage html Bundesliga html Bundestag2005 html Butterfly html CoalMiners html DanishWelfare html Employment html Federalist html Hitters html HorseKicks html Hospital html JobSatisfaction html JointSports html Kappa html Lifeboats html MSPatients html NonResponse html Ord_plot html OvaryCancer html PreSex html Punishment html RepVict html Rochdale html Saxony html SexualFun html SpaceShuttle html Suicide html Trucks html UKSoccer html VisualAcuity html VonBort html WeldonDice html WomenQueue html agreementplot html assoc html assocstats html binregplot html Rd warning: /tmp/RtmprU4XOI/R.INSTALL52872caff241/vcd/man/binregplot.Rd:115: file link 'grid.abline' in package 'grid' does not exist and so has been treated as a topic Rd warning: /tmp/RtmprU4XOI/R.INSTALL52872caff241/vcd/man/binregplot.Rd:143: file link 'grid.abline' in package 'grid' does not exist and so has been treated as a topic cd_plot html co_table html Rd warning: /tmp/RtmprU4XOI/R.INSTALL52872caff241/vcd/man/co_table.Rd:19: file link '[' in package 'base' does not exist and so has been treated as a topic coindep_test html cotab_panel html cotabplot html distplot html doubledecker html fourfold html goodfit html grid_barplot html grid_legend html hls html independence_table html labeling_border html labeling_cells_list html legends html lodds html loddsratio html mar_table html mosaic html mplot html pairs.table html panel_pairs_diagonal html panel_pairs_off-diagonal html plot.loddsratio html plot.loglm html rootogram html shadings html Rd warning: /tmp/RtmprU4XOI/R.INSTALL52872caff241/vcd/man/shadings.Rd:126: file link 'diverge_hcl' in package 'colorspace' does not exist and so has been treated as a topic Rd warning: /tmp/RtmprU4XOI/R.INSTALL52872caff241/vcd/man/shadings.Rd:201: file link 'diverge_hcl' in package 'colorspace' does not exist and so has been treated as a topic sieve html spacings html spine html struc_assoc html struc_mosaic html struc_sieve html strucplot html structable html table2d_summary html ternaryplot html tile html woolf_test html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vcd) Making 'packages.html' ... done * installing *source* package 'float' ... ** package 'float' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking for sinf in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking size of int... 4 checking for gcc option to support OpenMP... -fopenmp checking for echo... yes checking for grep... yes checking for sgemm_ in -lRblas... yes checking for sgetrf_ in -lRblas... yes ******************* Results of float package configure ******************* * OpenMP Report: >> OPENMP_CFLAGS=-fopenmp >> OMPFLAGS_C=$(SHLIB_OPENMP_CFLAGS) * byte order: little endian * using system BLAS library >> BLAS_LIBS=-L/opt/R/4.0.3/lib/R/lib -lRblas * using system LAPACK library >> LAPACK_LIBS=-L/opt/R/4.0.3/lib/R/lib -lRlapack ************************************************************************* configure: creating ./config.status config.status: creating src/endianness.h configure: creating ./config.status config.status: creating src/endianness.h config.status: creating src/Makevars ** libs gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c backsolve.c -o backsolve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c binary.c -o binary.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c chol.c -o chol.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c chol2inv.c -o chol2inv.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c colSums.c -o colSums.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c cond.c -o cond.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c converters.c -o converters.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c crossprod.c -o crossprod.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c eigen.c -o eigen.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c extremes.c -o extremes.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c float_native.c -o float_native.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c isSymmetric.c -o isSymmetric.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c machine.c -o machine.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c math.c -o math.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c matmult.c -o matmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c NA.c -o NA.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c norm.c -o norm.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c qr.c -o qr.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c rand.c -o rand.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c scale.c -o scale.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c sign.c -o sign.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c solve.c -o solve.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c sum.c -o sum.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c svd.c -o svd.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c sweep.c -o sweep.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c xpose.c -o xpose.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c utils/matmult.c -o utils/matmult.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c utils/symmetrize.c -o utils/symmetrize.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -c utils/xpose.c -o utils/xpose.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c slapack_wrap.f -o slapack_wrap.o gcc -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o float.so backsolve.o binary.o chol.o chol2inv.o colSums.o cond.o converters.o crossprod.o eigen.o extremes.o float_native.o isSymmetric.o machine.o math.o matmult.o NA.o norm.o qr.o rand.o scale.o sign.o solve.o sum.o svd.o sweep.o xpose.o utils/matmult.o utils/symmetrize.o utils/xpose.o slapack_wrap.o -L/opt/R/4.0.3/lib/R/lib -lRlapack -L/opt/R/4.0.3/lib/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -lgfortran -lm -lquadmath -L/opt/R/4.0.3/lib/R/lib -lR ar crs libfloat.a backsolve.o binary.o chol.o chol2inv.o colSums.o cond.o converters.o crossprod.o eigen.o extremes.o float_native.o isSymmetric.o machine.o math.o matmult.o NA.o norm.o qr.o rand.o scale.o sign.o solve.o sum.o svd.o sweep.o xpose.o utils/matmult.o utils/symmetrize.o utils/xpose.o slapack_wrap.o ranlib libfloat.a installing via 'install.libs.R' to /opt/R/4.0.3/lib/R/library/00LOCK-float/00new/float ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'backsolve' from package 'base' in package 'float' Creating a generic function for 'forwardsolve' from package 'base' in package 'float' Creating a generic function for 'chol2inv' from 'base' in package 'float' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'float' Creating a generic function for 'colSums' from package 'base' in package 'float' Creating a generic function for 'rowSums' from package 'base' in package 'float' Creating a generic function for 'colMeans' from package 'base' in package 'float' Creating a generic function for 'rowMeans' from package 'base' in package 'float' Creating a generic function for 'rcond' from 'base' in package 'float' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'float' Creating a generic function for 'typeof' from package 'base' in package 'float' Creating a generic function for 'storage.mode' from package 'base' in package 'float' Creating a generic function for 'crossprod' from package 'base' in package 'float' Creating a generic function for 'tcrossprod' from package 'base' in package 'float' Creating a generic function for 'diag' from package 'base' in package 'float' Creating a generic function for 'nrow' from package 'base' in package 'float' Creating a generic function for 'ncol' from package 'base' in package 'float' Creating a generic function for 'NROW' from package 'base' in package 'float' Creating a generic function for 'NCOL' from package 'base' in package 'float' Creating a generic function for 'eigen' from package 'base' in package 'float' Creating a generic function for 'which.min' from package 'base' in package 'float' Creating a generic function for 'which.max' from package 'base' in package 'float' Creating a generic function for 'rownames' from package 'base' in package 'float' Creating a generic function for 'rownames<-' from package 'base' in package 'float' Creating a generic function for 'colnames' from package 'base' in package 'float' Creating a generic function for 'colnames<-' from package 'base' in package 'float' Creating a generic function for 'norm' from package 'base' in package 'float' Creating a generic function for 'qr.Q' from package 'base' in package 'float' Creating a generic function for 'qr.R' from package 'base' in package 'float' Creating a generic function for 'qr.qy' from package 'base' in package 'float' Creating a generic function for 'qr.qty' from package 'base' in package 'float' Creating a generic function for 'La.svd' from package 'base' in package 'float' Creating a generic function for 'svd' from 'base' in package 'float' (from the saved implicit definition) Creating a generic function for 'svd' from package 'base' in package 'float' Creating a generic function for 'sweep' from package 'base' in package 'float' ** help *** installing help indices converting help for package 'float' finding HTML links ... done Machine_float html NA_float_ html NaNf html arithmetic html backsolve html bind html bracket html c html chol html chol2inv html colsums html comparison html converters html crossprod html diag html dims html eigen html extremes html float-package html float html float32-class html float32 html hyperbolic html is.float html isSymmetric html log html mathis html matmult html miscmath html na html names html norm html print-float32 html qr html rand html rcond html rep html round html scale html sign html solve html specialmath html sum html svd html sweep html trig html xpose html ** building package indices ** installing vignettes 'float.Rnw' using 'UTF-8' ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (float) Making 'packages.html' ... done * installing *source* package 'titanic' ... ** package 'titanic' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'titanic' finding HTML links ... done titanic html titanic_gender_class_model html titanic_gender_model html titanic_test html titanic_train html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (titanic) Making 'packages.html' ... done * installing *source* package 'xgboost' ... ** package 'xgboost' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking Backtrace lib... checking for backtrace in -lexecinfo... no checking endian... configure: creating ./config.status config.status: creating src/Makevars ** libs Makevars:17: -DXGBOOST_STRICT_R_MODE=1 Makevars:17: -DDMLC_LOG_BEFORE_THROW=0 Makevars:17: -DDMLC_ENABLE_STD_THREAD=1 Makevars:17: -DDMLC_DISABLE_STDIN=1 Makevars:17: -DDMLC_LOG_CUSTOMIZE=1 Makevars:17: -DXGBOOST_CUSTOMIZE_LOGGER=1 Makevars:17: -DRABIT_CUSTOMIZE_MSG_ g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c xgboost_R.cc -o xgboost_R.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c xgboost_custom.cc -o xgboost_custom.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fpic -g -O2 -c xgboost_assert.c -o xgboost_assert.o gcc -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/engine.cc -o rabit/src/engine.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/c_api.cc -o rabit/src/c_api.o g++ -std=gnu++14 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=1 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -I/usr/local/include -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -fpic -g -O2 -c rabit/src/allreduce_base.cc -o rabit/src/allreduce_base.o g++ -std=gnu++14 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o ./amalgamation/xgboost-all0.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine.o ./rabit/src/c_api.o ./rabit/src/allreduce_base.o -fopenmp -DDMLC_CMAKE_LITTLE_ENDIAN=1 -pthread -L/opt/R/4.0.3/lib/R/lib -lR installing to /opt/R/4.0.3/lib/R/library/00LOCK-xgboost/00new/xgboost/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'xgboost' finding HTML links ... done a-compatibility-note-for-saveRDS-save html Rd warning: /tmp/RtmpKEFxSf/R.INSTALL580854c950c0/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:5: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpKEFxSf/R.INSTALL580854c950c0/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:8: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpKEFxSf/R.INSTALL580854c950c0/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:10: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpKEFxSf/R.INSTALL580854c950c0/xgboost/man/a-compatibility-note-for-saveRDS-save.Rd:12: file link 'saveRDS' in package 'base' does not exist and so has been treated as a topic agaricus.test html agaricus.train html callbacks html cb.cv.predict html cb.early.stop html cb.evaluation.log html cb.gblinear.history html cb.print.evaluation html cb.reset.parameters html cb.save.model html dim.xgb.DMatrix html dimnames.xgb.DMatrix html getinfo html normalize html predict.xgb.Booster html prepare.ggplot.shap.data html print.xgb.Booster html print.xgb.DMatrix html print.xgb.cv html setinfo html slice.xgb.DMatrix html xgb.Booster.complete html xgb.DMatrix html xgb.DMatrix.save html xgb.attr html xgb.config html xgb.create.features html xgb.cv html xgb.dump html xgb.gblinear.history html xgb.importance html xgb.load html xgb.load.raw html xgb.model.dt.tree html xgb.parameters html xgb.plot.deepness html xgb.plot.importance html xgb.plot.multi.trees html xgb.plot.shap html xgb.plot.shap.summary html xgb.plot.tree html xgb.save html xgb.save.raw html xgb.serialize html xgb.shap.data html xgb.train html xgb.unserialize html xgbConfig html xgboost-deprecated html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xgboost) Making 'packages.html' ... done * installing *source* package 'DiagrammeR' ... ** package 'DiagrammeR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DiagrammeR' finding HTML links ... done DiagrammeR html Rd warning: /tmp/RtmpTzh6c5/R.INSTALL59ef6ea3bb40/DiagrammeR/man/DiagrammeR.Rd:15: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic DiagrammeROutput html add_balanced_tree html add_cycle html add_edge html add_edge_clone html add_edge_df html add_edges_from_table html add_edges_w_string html add_forward_edges_ws html add_full_graph html add_global_graph_attrs html add_gnm_graph html add_gnp_graph html add_graph_action html add_graph_to_graph_series html add_grid_2d html add_grid_3d html add_growing_graph html add_islands_graph html add_mathjax html add_n_node_clones html add_n_nodes html add_n_nodes_ws html add_node html add_node_clones_ws html add_node_df html add_nodes_from_df_cols html add_nodes_from_table html add_pa_graph html add_path html add_prism html add_reverse_edges_ws html add_smallworld_graph html add_star html clear_selection html colorize_edge_attrs html colorize_node_attrs html combine_edfs html combine_graphs html combine_ndfs html copy_edge_attrs html copy_node_attrs html count_asymmetric_node_pairs html count_automorphisms html count_edges html count_graphs_in_graph_series html count_loop_edges html count_mutual_node_pairs html count_nodes html count_s_connected_cmpts html count_unconnected_node_pairs html count_unconnected_nodes html count_w_connected_cmpts html create_edge_df html create_graph html create_graph_series html create_node_df html currencies html delete_cache html delete_edge html delete_edges_ws html delete_global_graph_attrs html delete_graph_actions html delete_loop_edges_ws html delete_node html delete_nodes_ws html deselect_edges html deselect_nodes html display_metagraph html do_bfs html do_dfs html drop_edge_attrs html drop_node_attrs html edge_aes html edge_data html edge_list_1 html edge_list_2 html export_csv html export_graph html filter_graph_series html from_adj_matrix html from_igraph html fully_connect_nodes_ws html fully_disconnect_nodes_ws html generate_dot html get_adhesion html get_agg_degree_in html get_agg_degree_out html get_agg_degree_total html get_all_connected_nodes html get_alpha_centrality html get_articulation_points html get_authority_centrality html get_betweenness html get_bridging html get_cache html get_closeness html get_closeness_vitality html get_cmty_edge_btwns html get_cmty_fast_greedy html get_cmty_l_eigenvec html get_cmty_louvain html get_cmty_walktrap html get_common_nbrs html get_constraint html get_coreness html get_degree_distribution html get_degree_histogram html get_degree_in html get_degree_out html get_degree_total html get_dice_similarity html get_eccentricity html get_edge_attrs html get_edge_attrs_ws html get_edge_count_w_multiedge html get_edge_df html get_edge_df_ws html get_edge_ids html get_edge_info html get_edges html get_eigen_centrality html get_girth html get_global_graph_attr_info html get_graph_actions html get_graph_from_graph_series html get_graph_info html get_graph_log html get_graph_name html get_graph_series_info html get_graph_time html get_jaccard_similarity html get_last_edges_created html get_last_nodes_created html get_leverage_centrality html get_max_eccentricity html get_mean_distance html get_min_cut_between html get_min_eccentricity html get_multiedge_count html get_nbrs html get_node_attrs html get_node_attrs_ws html get_node_df html get_node_df_ws html get_node_ids html get_node_info html get_non_nbrs html get_pagerank html get_paths html get_periphery html get_predecessors html get_radiality html get_reciprocity html get_s_connected_cmpts html get_selection html get_similar_nbrs html get_successors html get_w_connected_cmpts html grViz html grVizOutput html import_graph html invert_selection html is_edge_loop html is_edge_multiple html is_edge_mutual html is_edge_present html is_graph_connected html is_graph_dag html is_graph_directed html is_graph_empty html is_graph_simple html is_graph_undirected html is_graph_weighted html is_node_present html is_property_graph html join_edge_attrs html join_node_attrs html layout_nodes_w_string html mermaid html Rd warning: /tmp/RtmpTzh6c5/R.INSTALL59ef6ea3bb40/DiagrammeR/man/mermaid.Rd:13: file link 'tags' in package 'htmltools' does not exist and so has been treated as a topic mutate_edge_attrs html mutate_edge_attrs_ws html mutate_node_attrs html mutate_node_attrs_ws html node_aes html node_data html node_edge_aes_data html node_list_1 html node_list_2 html nudge_node_positions_ws html open_graph html pipe html print.dgr_graph html recode_edge_attrs html recode_node_attrs html remove_graph_from_graph_series html rename_edge_attrs html rename_node_attrs html renderDiagrammeR html renderGrViz html render_graph html render_graph_from_graph_series html reorder_graph_actions html replace_in_spec html rescale_edge_attrs html rescale_node_attrs html rev_edge_dir html rev_edge_dir_ws html save_graph html select_edges html select_edges_by_edge_id html select_edges_by_node_id html select_last_edges_created html select_last_nodes_created html select_nodes html select_nodes_by_degree html select_nodes_by_id html select_nodes_in_neighborhood html set_cache html set_edge_attr_to_display html set_edge_attrs html set_edge_attrs_ws html set_graph_directed html set_graph_name html set_graph_time html set_graph_undirected html set_node_attr_to_display html set_node_attr_w_fcn html set_node_attrs html set_node_attrs_ws html set_node_position html to_igraph html transform_to_complement_graph html transform_to_min_spanning_tree html transform_to_subgraph_ws html trav_both html trav_both_edge html trav_in html trav_in_edge html trav_in_node html trav_in_until html trav_out html trav_out_edge html trav_out_node html trav_out_until html trav_reverse_edge html trigger_graph_actions html usd_exchange_rates html visnetwork html x11_hex html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiagrammeR) Making 'packages.html' ... done Updating HTML index of packages in '.Library' Making 'packages.html' ... done Attaching package: 'xgboost' The following object is masked from 'package:dplyr': slice Warning messages: 1: In system("timedatectl", intern = TRUE) : running command 'timedatectl' had status 1 2: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'freetypeharfbuzz' had non-zero exit status 3: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'vdiffr' had non-zero exit status 4: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'topicmodels' had non-zero exit status 5: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'V8' had non-zero exit status 6: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'rstan' had non-zero exit status 7: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'prophet' had non-zero exit status 8: In install.packages(package, dependencies = TRUE, repos = NULL, : installation of package 'modeltime' had non-zero exit status STEP 28: USER root STEP 29: RUN yum upgrade -y --skip-broken --allowerasing glibc glibc-common libdb libkadm5 perl-libs perl-IO libwebp Last metadata expiration check: 1:40:30 ago on Tue Sep 7 20:47:22 2021. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Upgrading: libwebp x86_64 1.0.0-3.el8_4 ubi-8-appstream 272 k libwebp-devel x86_64 1.0.0-3.el8_4 ubi-8-appstream 37 k Transaction Summary ================================================================================ Upgrade 2 Packages Total download size: 309 k Downloading Packages: [MIRROR] libwebp-1.0.0-3.el8_4.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/l/libwebp-1.0.0-3.el8_4.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] [MIRROR] libwebp-devel-1.0.0-3.el8_4.x86_64.rpm: Curl error (28): Timeout was reached for https://cdn-ubi.redhat.com/content/public/ubi/dist/ubi8/8/x86_64/appstream/os/Packages/l/libwebp-devel-1.0.0-3.el8_4.x86_64.rpm [Operation timed out after 5000 milliseconds with 0 out of 0 bytes received] (1/2): libwebp-devel-1.0.0-3.el8_4.x86_64.rpm 7.4 kB/s | 37 kB 00:05 (2/2): libwebp-1.0.0-3.el8_4.x86_64.rpm 54 kB/s | 272 kB 00:05 -------------------------------------------------------------------------------- Total 62 kB/s | 309 kB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : libwebp-1.0.0-3.el8_4.x86_64 1/4 Upgrading : libwebp-devel-1.0.0-3.el8_4.x86_64 2/4 Cleanup : libwebp-devel-1.0.0-1.el8.x86_64 3/4 Cleanup : libwebp-1.0.0-1.el8.x86_64 4/4 Running scriptlet: libwebp-1.0.0-1.el8.x86_64 4/4 Verifying : libwebp-1.0.0-3.el8_4.x86_64 1/4 Verifying : libwebp-1.0.0-1.el8.x86_64 2/4 Verifying : libwebp-devel-1.0.0-3.el8_4.x86_64 3/4 Verifying : libwebp-devel-1.0.0-1.el8.x86_64 4/4 Installed products updated. Upgraded: libwebp-1.0.0-3.el8_4.x86_64 libwebp-devel-1.0.0-3.el8_4.x86_64 Complete! STEP 30: RUN rpm -e --nodeps avahi-libs binutils cups-libs glibc-devel glibc-headers jasper-libs kernel-headers krb5-devel libcurl-devel libX11-common libxml2-devel perl-macros openssl-devel libtiff-devel jasper-devel glib2-devel libwebp-devel libX11-xcb libX11-devel pcre-utf16 pcre-utf32 pcre-cpp pcre-devel pcre2-devel graphviz LibRaw OpenEXR-devel OpenEXR-libs qt5-qtbase STEP 31: RUN rm -f /usr/share/doc/perl-IO-Socket-SSL/certs/client-key.enc /usr/share/doc/perl-IO-Socket-SSL/certs/client-key.pem /usr/share/doc/perl-IO-Socket-SSL/certs/proxyca.pem /usr/share/doc/perl-IO-Socket-SSL/certs/server2-key.pem /usr/share/doc/perl-IO-Socket-SSL/certs/server-ecc-key.pem /usr/share/doc/perl-IO-Socket-SSL/certs/server-key.enc /usr/share/doc/perl-IO-Socket-SSL/certs/server-key.pem /usr/share/doc/perl-IO-Socket-SSL/certs/server-wildcard.pem /usr/share/doc/perl-IO-Socket-SSL/certs/sub-server.pem /usr/share/doc/perl-IO-Socket-SSL/example/simulate_proxy.pl /usr/share/doc/perl-Net-SSLeay/examples/server_key.pem STEP 32: RUN chmod g-s /usr/libexec/openssh/ssh-keysign STEP 33: RUN rm -rf /opt/R/4.0.3/lib/R/library/webshot/casperjs STEP 34: RUN yum clean all && rm -rf /tmp/repo/ && rm *.rpm *.R 25 files removed STEP 35: USER 1001 STEP 36: WORKDIR $HOME STEP 37: HEALTHCHECK --interval=10s --timeout=1s CMD Rscript -e 'print("up")' || exit 1 STEP 38: ENTRYPOINT [ "R" ] STEP 39: COMMIT registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai Getting image source signatures Copying blob sha256:98469092e6042f8c9cc81dcb1a710957fb5ef27817c9b178f7b71c4f242cb2ed Copying blob sha256:bfb9caafb0fc0d8496a27709f1698ac90d1a306556387a75b92a86063544f4c8 Copying blob sha256:a7289086c95c733fa09dcfd84e354b7c88469dc5dc470dc53a2dfa9e83cae53b Copying blob sha256:16fcea4fb708eb095ce8b079d1992c772acfaedffd928ad99970fd27c051063a Copying blob sha256:b58b800609d5df36ddc738673ac97ca0be1ce8a01c87471ff296677f6c868d61 Copying config sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a Writing manifest to image destination Storing signatures --> 4be5838de10 Successfully tagged registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:latest 4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a + buildah tag --storage-driver=vfs registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:ibci-464864 + buildah push --storage-driver=vfs --authfile staging_auth.json --digestfile=ci-artifacts/build/digest registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:ibci-464864 Getting image source signatures Copying blob sha256:bfb9caafb0fc0d8496a27709f1698ac90d1a306556387a75b92a86063544f4c8 Copying blob sha256:a7289086c95c733fa09dcfd84e354b7c88469dc5dc470dc53a2dfa9e83cae53b Copying blob sha256:16fcea4fb708eb095ce8b079d1992c772acfaedffd928ad99970fd27c051063a Copying blob sha256:98469092e6042f8c9cc81dcb1a710957fb5ef27817c9b178f7b71c4f242cb2ed Copying blob sha256:b58b800609d5df36ddc738673ac97ca0be1ce8a01c87471ff296677f6c868d61 Copying config sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a Writing manifest to image destination Storing signatures + echo 'Read the tags' Read the tags + tags_file=ci-artifacts/preflight/tags.txt + test -f ci-artifacts/preflight/tags.txt + IFS= + read -r tag + buildah tag --storage-driver=vfs registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:4.0.3 + buildah push --storage-driver=vfs --authfile staging_auth.json registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:4.0.3 Getting image source signatures Copying blob sha256:a7289086c95c733fa09dcfd84e354b7c88469dc5dc470dc53a2dfa9e83cae53b Copying blob sha256:16fcea4fb708eb095ce8b079d1992c772acfaedffd928ad99970fd27c051063a Copying blob sha256:98469092e6042f8c9cc81dcb1a710957fb5ef27817c9b178f7b71c4f242cb2ed Copying blob sha256:bfb9caafb0fc0d8496a27709f1698ac90d1a306556387a75b92a86063544f4c8 Copying blob sha256:b58b800609d5df36ddc738673ac97ca0be1ce8a01c87471ff296677f6c868d61 Copying config sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a Writing manifest to image destination Storing signatures + IFS= + read -r tag + buildah tag --storage-driver=vfs registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:latest + buildah push --storage-driver=vfs --authfile staging_auth.json registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:latest Getting image source signatures Copying blob sha256:bfb9caafb0fc0d8496a27709f1698ac90d1a306556387a75b92a86063544f4c8 Copying blob sha256:98469092e6042f8c9cc81dcb1a710957fb5ef27817c9b178f7b71c4f242cb2ed Copying blob sha256:16fcea4fb708eb095ce8b079d1992c772acfaedffd928ad99970fd27c051063a Copying blob sha256:b58b800609d5df36ddc738673ac97ca0be1ce8a01c87471ff296677f6c868d61 Copying blob sha256:a7289086c95c733fa09dcfd84e354b7c88469dc5dc470dc53a2dfa9e83cae53b Copying config sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a Writing manifest to image destination Storing signatures + IFS= + read -r tag ++ podman inspect --storage-driver=vfs registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai --format '{{.Id}}' + IMAGE_ID=sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a + echo IMAGE_ID=sha256:4be5838de10a3268f01641b64ea9227e9fe2d9acc7bd426f1bd046762d25965a + IMAGE_PODMAN_SHA=sha256:1986c3cd8d4c5a2c517a570ddf25184ca59f5a8d77bd861c66c2d83fddce940e + echo IMAGE_PODMAN_SHA=sha256:1986c3cd8d4c5a2c517a570ddf25184ca59f5a8d77bd861c66c2d83fddce940e + echo IMAGE_FULLTAG=registry1.dso.mil/ironbank-staging/aiml/python/python-r-ai:ibci-464864 + echo IMAGE_NAME=aiml/python/python-r-ai + branches=("master" "development") + [[ master development =~ development ]] + msg='A tarball of the built image can be retrieved from the documentation job artifacts.' + echo 'A tarball of the built image can be retrieved from the documentation job artifacts.' A tarball of the built image can be retrieved from the documentation job artifacts. section_end:1631054236:step_script section_start:1631054236:upload_artifacts_on_success Uploading artifacts for successful job Uploading artifacts... ci-artifacts/build/: found 2 matching files and directories Uploading artifacts as "archive" to coordinator... ok id=6305469 responseStatus=201 Created token=VjRNHtzc Uploading artifacts... build.env: found 1 matching files and directories  Uploading artifacts as "dotenv" to coordinator... ok id=6305469 responseStatus=201 Created token=VjRNHtzc section_end:1631054238:upload_artifacts_on_success section_start:1631054238:cleanup_file_variables Cleaning up file based variables section_end:1631054238:cleanup_file_variables Job succeeded