Running with gitlab-runner 13.5.0 (ece86343)  on global-shared-gitlab-runner-6ccdff99f8-nk6hk JXqWjmzm section_start:1610474702:resolve_secrets Resolving secrets section_end:1610474702:resolve_secrets section_start:1610474702:prepare_executor Preparing the "kubernetes" executor Using Kubernetes namespace: gitlab-runner Using Kubernetes executor with image ${GITLAB_INTERNAL_REGISTRY}/ironbank-tools/ironbank-pipeline/python:pyyaml ... section_end:1610474702:prepare_executor section_start:1610474702:prepare_script Preparing environment Waiting for pod gitlab-runner/runner-jxqwjmzm-project-3540-concurrent-0b5w9t to be running, status is Pending Running on runner-jxqwjmzm-project-3540-concurrent-0b5w9t via global-shared-gitlab-runner-6ccdff99f8-nk6hk... section_end:1610474705:prepare_script section_start:1610474705:get_sources Getting source from Git repository Fetching changes with git depth set to 50... Initialized empty Git repository in /builds/dsop/opensource/jupyter/jupyterlab/.git/ Created fresh repository. Checking out 4e9f0a72 as development... Skipping Git submodules setup section_end:1610474705:get_sources section_start:1610474705:download_artifacts Downloading artifacts Downloading artifacts for csv output (1415987)... Downloading artifacts from coordinator... ok  id=1415987 responseStatus=200 OK token=AMBjzwpT Downloading artifacts for hardening_manifest (1415978)... Downloading artifacts from coordinator... ok  id=1415978 responseStatus=200 OK token=tmMy6ix5 Downloading artifacts for load scripts (1415975)... Downloading artifacts from coordinator... ok  id=1415975 responseStatus=200 OK token=BHsvks-E section_end:1610474706:download_artifacts section_start:1610474706:step_script Executing "step_script" stage of the job script $ "${PIPELINE_REPO_DIR}/stages/vat/vat-run.sh" Collecting pip Downloading pip-20.3.3-py2.py3-none-any.whl (1.5 MB) Collecting setuptools Downloading setuptools-51.1.2-py3-none-any.whl (784 kB) Collecting wheel Downloading wheel-0.36.2-py2.py3-none-any.whl (35 kB) Collecting minepy Downloading minepy-1.2.5.tar.gz (495 kB) Collecting python-gitlab Downloading python_gitlab-2.5.0-py3-none-any.whl (93 kB) Collecting numpy>=1.3.0 Downloading numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl (14.8 MB) Collecting requests>=2.22.0 Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.2-py2.py3-none-any.whl (136 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Building wheels for collected packages: minepy Building wheel for minepy (setup.py): started ERROR: Command errored out with exit status 1: command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-pf0gp_y4/minepy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-pf0gp_y4/minepy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-b7kfqru8 cwd: /tmp/pip-install-pf0gp_y4/minepy/ Complete output (47 lines): running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/minepy copying minepy/__init__.py -> build/lib.linux-x86_64-3.6/minepy /usr/local/lib/python3.6/site-packages/setuptools/lib2to3_ex.py:44: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process. SetuptoolsDeprecationWarning) Fixing build/lib.linux-x86_64-3.6/minepy/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing build/lib.linux-x86_64-3.6/minepy/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-pf0gp_y4/minepy/setup.py", line 55, in cmdclass = {'build_ext': build_ext_custom} File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 163, in setup return distutils.core.setup(**attrs) File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup dist.run_commands() File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/usr/local/lib/python3.6/site-packages/wheel/bdist_wheel.py", line 290, in run self.run_command('build') File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run self.run_command(cmd_name) File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/tmp/pip-install-pf0gp_y4/minepy/setup.py", line 9, in run import numpy ModuleNotFoundError: No module named 'numpy' ---------------------------------------- ERROR: Failed building wheel for minepy Building wheel for minepy (setup.py): finished with status 'error' Running setup.py clean for minepy Failed to build minepy DEPRECATION: Could not build wheels for minepy which do not use PEP 517. pip will fall back to legacy 'setup.py install' for these. pip 21.0 will remove support for this functionality. A possible replacement is to fix the wheel build issue reported above. You can find discussion regarding this at https://github.com/pypa/pip/issues/8368. Installing collected packages: pip, setuptools, wheel, numpy, minepy, idna, chardet, urllib3, certifi, requests, python-gitlab Attempting uninstall: pip Found existing installation: pip 20.2.2 Uninstalling pip-20.2.2: Successfully uninstalled pip-20.2.2 Attempting uninstall: setuptools Found existing installation: setuptools 49.6.0 Uninstalling setuptools-49.6.0: Successfully uninstalled setuptools-49.6.0 Attempting uninstall: wheel Found existing installation: wheel 0.35.1 Uninstalling wheel-0.35.1: Successfully uninstalled wheel-0.35.1 Running setup.py install for minepy: started Running setup.py install for minepy: finished with status 'done' Successfully installed certifi-2020.12.5 chardet-4.0.0 idna-2.10 minepy-1.2.5 numpy-1.19.5 pip-20.3.3 python-gitlab-2.5.0 requests-2.25.1 setuptools-51.1.2 urllib3-1.26.2 wheel-0.36.2 Collecting mysql-connector-python==8.0.20 Downloading mysql_connector_python-8.0.20-cp36-cp36m-manylinux1_x86_64.whl (14.8 MB) Collecting numpy==1.19.2 Downloading numpy-1.19.2-cp36-cp36m-manylinux2010_x86_64.whl (14.5 MB) Collecting pandas==1.0.3 Downloading pandas-1.0.3-cp36-cp36m-manylinux1_x86_64.whl (10.0 MB) Collecting protobuf==3.13.0 Downloading protobuf-3.13.0-cp36-cp36m-manylinux1_x86_64.whl (1.3 MB) Requirement already satisfied: setuptools in /usr/local/lib/python3.6/site-packages (from protobuf==3.13.0->-r ci-artifacts/[MASKED]/stages/vat/requirements.txt (line 4)) (51.1.2) Collecting python-dateutil==2.8.1 Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting pytz==2020.1 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting six==1.15.0 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Installing collected packages: six, pytz, python-dateutil, protobuf, numpy, pandas, mysql-connector-python Attempting uninstall: numpy Found existing installation: numpy 1.19.5 Uninstalling numpy-1.19.5: Successfully uninstalled numpy-1.19.5 Successfully installed mysql-connector-python-8.0.20 numpy-1.19.2 pandas-1.0.3 protobuf-3.13.0 python-dateutil-2.8.1 pytz-2020.1 six-1.15.0 INFO: Log level set to info INFO: ***************************** INFO: SQL Agent ***************************** INFO: Args ---------------------------- INFO: Namespace(comp_link='https://repo1.dso.mil/dsop/opensource/jupyter/jupyterlab/-/jobs/1415983/artifacts/browse/ci-artifacts/scan-results/openscap//', container='opensource/jupyter/jupyterlab', csv_dir='ci-artifacts/scan-results/csvs/', db='vat_db', host='[MASKED]', jenkins='127401', parent='redhat/python/python36', parent_version='3.6', password='[MASKED]', scan_date='2021-01-12T18:05:29', sec_link='https://repo1.dso.mil/dsop/opensource/jupyter/jupyterlab/-/jobs/1415984/artifacts/browse/ci-artifacts/scan-results/openscap//', user='[MASKED]', version='1.4.2') INFO: INFO: last insert id not found could not find container WARNING: Empty DataFrame Columns: [finding, severity, package, link, description, score, package_path] Index: [] WARNING: Empty DataFrame Columns: [finding, severity, package, link, description, score, package_path] Index: [] section_end:1610474731:step_script section_start:1610474731:cleanup_file_variables Cleaning up file based variables section_end:1610474732:cleanup_file_variables Job succeeded