Running with gitlab-runner 13.8.0 (775dd39d)  on global-shared-gitlab-runner-89dbd4db8-766jc x53-piE3 section_start:1620317216:resolve_secrets Resolving secrets section_end:1620317216:resolve_secrets section_start:1620317216:prepare_executor Preparing the "kubernetes" executor Using Kubernetes namespace: gitlab-runner WARNING: Pulling GitLab Runner helper image from Docker Hub. Helper image is migrating to registry.gitlab.com, for more information see https://docs.gitlab.com/runner/configuration/advanced-configuration.html#migrating-helper-image-to-registrygitlabcom Using Kubernetes executor with image registry1.dso.mil/ironbank/opensource/clamav/clamav:0.103.0 ... section_end:1620317216:prepare_executor section_start:1620317216:prepare_script Preparing environment Waiting for pod gitlab-runner/runner-x53-pie3-project-6549-concurrent-1k4dcj to be running, status is Pending Waiting for pod gitlab-runner/runner-x53-pie3-project-6549-concurrent-1k4dcj to be running, status is Pending ContainersNotReady: "containers with unready status: [build helper]" ContainersNotReady: "containers with unready status: [build helper]" Running on runner-x53-pie3-project-6549-concurrent-1k4dcj via global-shared-gitlab-runner-89dbd4db8-766jc... section_end:1620317223:prepare_script section_start:1620317223:get_sources Getting source from Git repository Fetching changes with git depth set to 50... Initialized empty Git repository in /builds/dsop/opensource/r/r-studio/.git/ Created fresh repository. Checking out 2fec7593 as initial-release... Skipping Git submodules setup section_end:1620317223:get_sources section_start:1620317223:download_artifacts Downloading artifacts Downloading artifacts for import artifacts (3146649)... Downloading artifacts from coordinator... ok  id=3146649 responseStatus=200 OK token=K96Uj3Qa Downloading artifacts for load scripts (3146644)... Downloading artifacts from coordinator... ok  id=3146644 responseStatus=200 OK token=jU3k2yYP section_end:1620317225:download_artifacts section_start:1620317225:step_script Executing "step_script" stage of the job script  % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0$ mkdir -p "${ARTIFACT_DIR}" 0 0 0 0 $ "${PIPELINE_REPO_DIR}/stages/scan-artifacts/clamav-run.sh" 0 0 --:--:-- --:--:-- --:--:-- 0 100 161 100 161 0 0 1963 0 --:--:-- --:--:-- --:--:-- 1963 12 213M 12 25.7M 0 0 39.6M 0 0:00:05 --:--:-- 0:00:05 39.6M 61 213M 61 130M 0 0 79.3M 0 0:00:02 0:00:01 0:00:01 105M 100 213M 100 213M 0 0 85.2M 0 0:00:02 0:00:02 --:--:-- 101M ./ ./daily.cvd ./main.cvd ./bytecode.cvd clamav definitions successfully installed. clamscan --version ClamAV 0.103.0/26161/Wed May 5 11:06:38 2021 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/ModelMetrics_1.2.2.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.21 MB Data read: 0.02 MB (ratio 13.25:1) Time: 15.075 sec (0 m 15 s) Start Date: 2021:05:06 16:07:09 End Date: 2021:05:06 16:07:24 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/R6_2.5.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.66 MB Data read: 0.06 MB (ratio 11.20:1) Time: 14.972 sec (0 m 14 s) Start Date: 2021:05:06 16:07:24 End Date: 2021:05:06 16:07:39 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/RColorBrewer_1.1-2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.21 MB Data read: 0.01 MB (ratio 27.50:1) Time: 14.563 sec (0 m 14 s) Start Date: 2021:05:06 16:07:39 End Date: 2021:05:06 16:07:53 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/RcppArmadillo_0.10.4.0.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 27.05 MB Data read: 1.59 MB (ratio 17.01:1) Time: 27.133 sec (0 m 27 s) Start Date: 2021:05:06 16:07:53 End Date: 2021:05:06 16:08:21 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/Rcpp_1.0.6.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 53.91 MB Data read: 2.81 MB (ratio 19.17:1) Time: 27.607 sec (0 m 27 s) Start Date: 2021:05:06 16:08:21 End Date: 2021:05:06 16:08:48 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/RhpcBLASctl_0.20-137.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.70 MB Data read: 0.04 MB (ratio 20.00:1) Time: 14.652 sec (0 m 14 s) Start Date: 2021:05:06 16:08:48 End Date: 2021:05:06 16:09:03 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/SQUAREM_2021.1.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 1.25 MB Data read: 0.23 MB (ratio 5.53:1) Time: 14.863 sec (0 m 14 s) Start Date: 2021:05:06 16:09:03 End Date: 2021:05:06 16:09:18 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/caret_6.0-86.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 59.86 MB Data read: 5.02 MB (ratio 11.93:1) Time: 20.339 sec (0 m 20 s) Start Date: 2021:05:06 16:09:18 End Date: 2021:05:06 16:09:38 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/cli_2.5.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 1.76 MB Data read: 0.15 MB (ratio 11.87:1) Time: 16.582 sec (0 m 16 s) Start Date: 2021:05:06 16:09:38 End Date: 2021:05:06 16:09:55 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/colorspace_2.0-1.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 17.19 MB Data read: 2.09 MB (ratio 8.23:1) Time: 17.538 sec (0 m 17 s) Start Date: 2021:05:06 16:09:55 End Date: 2021:05:06 16:10:12 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/cpp11_0.2.7.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 2.62 MB Data read: 0.19 MB (ratio 13.96:1) Time: 15.215 sec (0 m 15 s) Start Date: 2021:05:06 16:10:12 End Date: 2021:05:06 16:10:27 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/crayon_1.4.1.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.28 MB Data read: 0.03 MB (ratio 9.00:1) Time: 15.139 sec (0 m 15 s) Start Date: 2021:05:06 16:10:27 End Date: 2021:05:06 16:10:43 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/data.table_1.14.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 75.80 MB Data read: 5.05 MB (ratio 15.00:1) Time: 21.446 sec (0 m 21 s) Start Date: 2021:05:06 16:10:43 End Date: 2021:05:06 16:11:04 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/digest_0.6.27.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 2.09 MB Data read: 0.16 MB (ratio 13.35:1) Time: 15.353 sec (0 m 15 s) Start Date: 2021:05:06 16:11:04 End Date: 2021:05:06 16:11:19 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/dplyr_1.0.6.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 11.80 MB Data read: 0.91 MB (ratio 12.97:1) Time: 20.285 sec (0 m 20 s) Start Date: 2021:05:06 16:11:19 End Date: 2021:05:06 16:11:40 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/ellipsis_0.3.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.05 MB Data read: 0.00 MB (ratio 13.00:1) Time: 14.840 sec (0 m 14 s) Start Date: 2021:05:06 16:11:40 End Date: 2021:05:06 16:11:55 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/evaluate_0.14.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.22 MB Data read: 0.02 MB (ratio 11.20:1) Time: 15.143 sec (0 m 15 s) Start Date: 2021:05:06 16:11:55 End Date: 2021:05:06 16:12:10 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/fansi_0.4.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 6.29 MB Data read: 0.26 MB (ratio 24.41:1) Time: 15.575 sec (0 m 15 s) Start Date: 2021:05:06 16:12:10 End Date: 2021:05:06 16:12:25 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/farver_2.1.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 8.90 MB Data read: 1.22 MB (ratio 7.30:1) Time: 15.619 sec (0 m 15 s) Start Date: 2021:05:06 16:12:25 End Date: 2021:05:06 16:12:41 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/float_0.2-4.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 21.18 MB Data read: 1.31 MB (ratio 16.19:1) Time: 18.458 sec (0 m 18 s) Start Date: 2021:05:06 16:12:41 End Date: 2021:05:06 16:12:59 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/foreach_1.5.1.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 1.04 MB Data read: 0.08 MB (ratio 12.67:1) Time: 15.219 sec (0 m 15 s) Start Date: 2021:05:06 16:12:59 End Date: 2021:05:06 16:13:15 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/generics_0.1.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.83 MB Data read: 0.11 MB (ratio 7.61:1) Time: 15.740 sec (0 m 15 s) Start Date: 2021:05:06 16:13:15 End Date: 2021:05:06 16:13:30 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/ggplot2_3.3.3.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 37.56 MB Data read: 2.91 MB (ratio 12.89:1) Time: 23.495 sec (0 m 23 s) Start Date: 2021:05:06 16:13:30 End Date: 2021:05:06 16:13:54 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/glue_1.4.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.61 MB Data read: 0.09 MB (ratio 6.54:1) Time: 15.013 sec (0 m 15 s) Start Date: 2021:05:06 16:13:54 End Date: 2021:05:06 16:14:09 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/gower_0.2.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.85 MB Data read: 0.13 MB (ratio 6.61:1) Time: 14.858 sec (0 m 14 s) Start Date: 2021:05:06 16:14:09 End Date: 2021:05:06 16:14:24 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/gtable_0.3.0.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 7.66 MB Data read: 0.35 MB (ratio 22.04:1) Time: 15.471 sec (0 m 15 s) Start Date: 2021:05:06 16:14:24 End Date: 2021:05:06 16:14:39 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/highr_0.9.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.14 MB Data read: 0.01 MB (ratio 11.67:1) Time: 14.683 sec (0 m 14 s) Start Date: 2021:05:06 16:14:39 End Date: 2021:05:06 16:14:54 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/ipred_0.9-11.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 1.78 MB Data read: 0.17 MB (ratio 10.58:1) Time: 15.344 sec (0 m 15 s) Start Date: 2021:05:06 16:14:54 End Date: 2021:05:06 16:15:09 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/isoband_0.2.4.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 9.86 MB Data read: 1.91 MB (ratio 5.15:1) Time: 15.637 sec (0 m 15 s) Start Date: 2021:05:06 16:15:09 End Date: 2021:05:06 16:15:25 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/iterators_1.0.13.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 1.84 MB Data read: 0.27 MB (ratio 6.73:1) Time: 15.525 sec (0 m 15 s) Start Date: 2021:05:06 16:15:25 End Date: 2021:05:06 16:15:40 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/knitr_1.33.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 7.69 MB Data read: 0.85 MB (ratio 9.07:1) Time: 18.869 sec (0 m 18 s) Start Date: 2021:05:06 16:15:40 End Date: 2021:05:06 16:15:59 Scanning /builds/dsop/opensource/r/r-studio/ci-artifacts/import-artifacts/external-resources/labeling_0.4.2.tar.gz ----------- SCAN SUMMARY ----------- Known viruses: 8526356 Engine version: 0.103.0 Scanned directories: 0 Scanned files: 1 Infected files: 0 Data scanned: 0.11 MB Data read: 0.01 MB (ratio 14.50:1) Time: 14.540 sec (0 m 14 s) Start Date: 2021:05:06 16:15:59 End Date: 2021:05:06 16:16:14